>_0004.000838_ 17739232 gi|17739232|gb|AAL41870.1| transcriptional regulator, LysR family [Agrobacterium tumefaciens str. C58 (Dupont)] (gb|AE008688|:c856494-855730, Atu0856
MGIALVRRTTRSVSLTEAGQ
QLYADVSPSIGAISQAAQAA
SSLSGTVRGQLRLAVSSIAE
RFLSGPLLASFADAHPDVQL
DIVVTDEEFDIVAEQYDAGV
RLGELIEQDMIAVPVSVPQR
QLAVCSAEYRDRFGLPTQPR
ELIDHRCIGWRARPGVAPYR
WEFAENGREFAVAVQPDFTT
NDMQLMIKLACAGAGITFGM
EETFRPHLESGKLIAMLEDY
SPVFAGFYLYYPSRRHIAPK
LRAFIDHVRLSRER
>_0083.003158_ NP_838579.1 gi|30064408|ref|NP_838579.1| putative LYSR-type transcriptional regulator [Shigella flexneri 2a str. 2457T]
MLNSWPLAKDLQVLVEIVHS
GSFSAAAATLGQTPAFVTKR
IQILENTLATTLLNRSARGV
ALTESGQRCYEHALEILTQY
QRLVDDVTQIKTRPEGMIRI
GCSFGFGRSHIAPAITELMR
NYPELQVHFELFDRQIDLVQ
DNIDLDIRINDEIPDYYIAH
LLTKNKRILCAAPEYLQKYP
QPQSLQELSRHDCLVTKERD
MTHGIWELGNGQEKKSVKVS
GHLSSNSGEIVLQWALEGKG
IMLRSEWDVLPFLESGKLVQ
VLPEYAQSANIWAVYRELLY
RSMKFVSARNFWRHGASNGW
ASPMKAIRSCRSTRNHSGSF
SRFLLNFVQIFVS
>_0018.003788_ BFUN_06OCT04_CONTIG481_REVISED_GENE3789 bfun_06oct04_Contig481_revised_gene3789
MRIPPLKAIVAFESVARTKS
VNRAADELGLTPSAVSHQIA
NLESMVGRPLFTRLGRGLVL
TPTGQQYLSDVTGSLADLSR
ATERASSQSGMEILRIHSSP
SFGLMWLLPRLASFQEANGD
IQLNLACSYEDVSFTSGYYD
VDVRHGYAHWTDGEIKTLRN
EFIAPLASAEYLGRHPRRSA
MRWFNWLARRRAWSA
>_0043.004057_ JANN_22DEC04_CONTIG27_REVISED_GENE4058 jann_22dec04_Contig27_revised_gene4058
MAVMTCSQRTANAIQSQSTS
QSYMSNLHCPASALRVGFSL
GYHPLFCYCRQKPSCIKKAG
TMSYLDNIRTFVRVYELGSM
SAAGRDLRISPAVTSSRISQ
LEEHLSVRLFQRTTRSLTPT
EHGKAFYSGAKEILESVENA
EAQVIDITENPKGSLYVAAP
LGVGRRLIAPEVPGFLDLYP
EVRVRLRLTDRKVDLTTEGL
DLAFFLGEPEDSTLRIRKIA
DVERVLCAAPDYVAARGMPA
GGAELTSGAHECLNLRFPGA
TEFQWHLKTPDGPKRFRIQG
RYESDDGDVLNDWALAGQGI
VMKPIFEVAEHLKAGRLVAV
AQETPPMPIQMACLFTHRRM
QDPKTRLFMEFVINRIGDLV
RQAEKLGQLPR
>_0018.002719_ BFUN_06OCT04_CONTIG481_REVISED_GENE2720 bfun_06oct04_Contig481_revised_gene2720
MPNLRKKLPSANALFVFEAA
ARCGNFTRAAQELYVSQPAV
SRMLSRMEDHLGVRLFERVR
GGIELTENGRILYRKISEGF
NGIESAIREIEARATGVESV
TLSVSTAFTTHWLMPRMSRL
NQAFPNVDLRFQLISGRIGG
PLVDVDLGMRFLREDEIGEN
SVLVMPETLLPVCNRRYHEA
AATEAGRKHGDTVIVMDDGE
RGWHDRFAAFAAQGRHAASM
LNFNDYAIVVQAALLGQGVA
LGWLNVVSHWLLEGALLPAE
EELIVTNRRCCLVWPENRPL
RPVAADVRDWILDETRADVR
AVDRQYPKLGLRRVLAQTGL
AIGPARDEARSDAAARPVTP
PGA
>_0006.004341_ NP_890661.1 gi|33603101|ref|NP_890661.1| putative LysR-family transcriptional regulator [Bordetella bronchiseptica RB50]
MSLPSLTALRTFEAAARYRS
VKLAAAELHVTPTAVSHQIQ
QLEDLLGVKLFERTGRGLVL
TDAAVSCLPYLQQGFESLKV
GVDKLRKHRGPDIITVNTSP
SFASLWLFPRLHRFSLLYPD
IDVRVTTRLRQAAQLRQEQQ
SGVNNVQDWVQEADLVIAYG
NGQFGGFEHEELIPLYIAPM
CSPALLPKGEKQAMGSRLLE
LPWLHDDRGTLYGSASFWQR
WLAAAGLADGKPAKEMHFTH
ALLALSAAADQLGVVVSTPV
LAESLLRDGILYLPFDEQVR
IDRSYYLVKDASTGNDSRLT
IFKEWLRQEAALSNAKGTSA
QRLA
>_0013.003029_ NP_882021.1 gi|33594377|ref|NP_882021.1| LysR-family transcriptional regulator [Bordetella pertussis]
MPNTIHQDEGRPIVNSNDHD
SPAESRASGVLNLTHLRTLV
AVVQEGHLTRAAERLRISQP
AASHHLRSLEQQFGLPLFTR
TPQGVVPTAAGLQLSEQAAR
LLASSLELLSTASELRGSAS
GRIAIGTIEDPSVHAALPSL
IKWFHEHYPLIELSIESRNS
SSIRQGILTGEINAGFYVSC
TNEANLREYEIGQRELVVVA
PQSWRERVATATWPELAKLP
WVMTTTGSAHSEITAQLFRS
HNITIRPALEVNTERLLRAM
VSQGVGLGFTRREFAEAEQA
RGAFFIVPISVHRTTMHFAY
ARSAETDPLIQILSRGLATV
LPVAERLIPSTAKPAEK
>_0018.000912_ BFUN_06OCT04_CONTIG480_REVISED_GENE559 bfun_06oct04_Contig480_revised_gene559
MDTRQLKYFVAIVECGSMGK
AAEKLYVAQPSLSQQMGRLE
SEFGTSLLLRSQRGVTPTAA
GQALYARSRAILRQMEQLKQ
HVKEGASAESGTVAVGLPTT
MVSVLAMPLIERVQQRYPGI
HLQLIESMSGAITELLASAR
LDLAILFRASDTLGVTAWPL
LEEQLFVMGEPGDGVAAEAQ
SCALSALNGVRMVAPGATNG
LRLLLERVFARENLELNIVA
DIDSLPTLLSIAESGHACTI
LPVSALAQREAARCPKIRAI
VAPELRRPASVCWSSTTMMS
SATVAVCRMIVELVEDLTAS
GVWKGISLPDEQSRRTLAEA
LRAPERHA
>_0086.000444_ ROSE_TM1040_30MAR04_CONTIG46_REVISED_GENE445 rose_tm1040_30mar04_Contig46_revised_gene445
MVLNIRHLAAHTQGRQTHSQ
TLDFKNMTPPDQVHPRPHID
PERLTREMNWNLLRTFVVLA
ESGSITEAAERLRLKQPSVS
VALKKLEDQLGQHLIDRSPG
HFTLTKAGQMLYREAVNING
SILRLATLMRTVTPEISGHV
RIAVASHVLCPLFDSVIGDF
YAAHPKASLAIDVITSGDAI
TAVAAKRVSFALALVREQDP
NLRYLPVYRETFGLFCGPRH
PLFGRSDLTLEDLKGHAAVV
FDNDRLQDALQDVTLLRARA
ALAPEITGVSENLEEVRRMI
MAGLGIGPLPKHVVARDIED
GLLWQVPPFEDLPEVDVYLI
WNPTTVRNRAEETLLTTLIE
RLETVPFAERSYA
>_0116.001030_ YP_193950.1 gi|58337365|ref|YP_193950.1| malolactic regulator [Lactobacillus acidophilus NCFM]
MNIQDLRYFHELVNLKSYTK
TAEKFGVSQPTITAAVKRLE
NRFGGTFLIRDQPHKSIIIT
RLGVQFDEHVQSILNEINIV
EEEIKQNQNASIPFGLPPII
GRNYFPKIVSQLFAKGLLHR
LNVIENGSYDLYHLLLEGYI
NFSMLGLTKVNVEPGIKLEV
VKSYPMCIVVSKTHPLATKK
AISFKEIANENFIGLSSDYI
HTKALDRMLKKSKINLNTIY
RSPDVTVVKNIVAQNLGISY
LTTLSITENDDVISIPLLDK
DQPKFILAAATRENHIMTDA
EEEFWEILTQISLRRQVLTS
TLPS
>_0043.001348_ JANN_22DEC04_CONTIG22_REVISED_GENE1349 jann_22dec04_Contig22_revised_gene1349
MQTRALKTLSKIAQVGSFVQ
SAEQLGMTLSAVSMQMKALE
AELGVALFDRSVRPPRLTPV
AAAVVTEAQALLLWEDRLLE
LCRPSDTLVGQYKLGFVTTA
AVRLLPDFLKTAQDMAPMAS
FEVETGLSATLQDKVMTGQI
DAAVVTDADGLPPRLSSRLL
RTEPFVFAAHGDLMADGIEG
LMTRDTFFHFMPDTGIGKLI
ARAMLQQNRPGAARTIVLDD
LEAIMECVASGLGFTLLPVP
DVERYLTRQVRTVPAPAGLE
RKLVLAVLRDGGMAPREAAL
GALFDAAVDPTGPS
>_0056.001752_ SARO_25NOV03_CONTIG28_REVISED_GENE1870 saro_25nov03_Contig28_revised_gene1870
MKRTHLPLNGLRVLDAAARH
LSFTRAADELAVTPAAVGQQ
IRALEDLLGVVLFRRTSKGL
ELTDEASAGLDAIREGFLRF
EEGVQAMQAGQSSHVYTIAC
PRDFFAAWLSPRLADFRAGN
PQMRFSLVGGDADVDFTEAN
LDLAVRWAEGPGDLEGVSLG
AATMITVAAPDAAPDSPWIG
WPGDPTPEGGEAGFSVGDAG
TAISAARAGLGRANVPFMLA
EGPLSSGRIVALGEPQVSRR
GYWLVAPPPQWRQKKVKALV
AALSS
>_0079.002604_ SBAL_17SEP04_CONTIG235_REVISED_GENE2607 sbal_17sep04_Contig235_revised_gene2607
MNIDVSENAIDIAFRVGEPK
DPDWIARPLTTISFVLCAST
SATQWHALQSIEALEQHPVI
IAKPVKTWRLQHNITGQNFE
FEPRGNIKLAVDDMAIASQA
VVAGLGIGLLPISMASEQIQ
SGKLVQILPEWQGIPRTAYL
MYRDRDNLPLRVRLLIDFML
ANPPEAY
>_0043.000658_ JANN_22DEC04_CONTIG19_REVISED_GENE659 jann_22dec04_Contig19_revised_gene659
MHVGRENSSFQICNSSQDIR
KSDILDAMSIRFRQLQAFHA
TFETGTVTGAATLLGISQPG
ISNLLAQLERETRFKLFERV
KGRLIPTPEAGVLYQEVDTV
VRGLDHVGQAVTDLQNKQGG
QLQVASQHAMSFGFMPKLIA
QFAKTRPDMSISFQSQYSSK
VQEWVMSGLFEIGVCETPQL
YDALDTHPFQVEMQLTLHPD
NPLARHDILTPELCGAEPFI
VMGPDHMTHRRTREAFHTAG
VPWNTRVHTHLFKNMLSFVQ
EDMGVAILDPFLLDHDESGS
FVTRPFAPAIHMDMMVITSA
TRPLSTLALDFLDLLLTGIA
QSDRRRVSPSNAAPGRPPLP
MAAR
>_0081.002968_ SDEN_20JUL04_CONTIG81_REVISED_GENE2969 sden_20jul04_Contig81_revised_gene2969
MFELLERKRHYFSIISEYIG
TIMSRAKSTLEQWRILQAVV
DHGGYAQAAEKLNKSQSSLN
HAVAKLQHQLGIPLLEVKGR
KAYLTEQGEVMLRRSRHLTQ
TVEELEQLAHNLEQGWEPSL
TLGREIIYPMPLLVAALKAF
LPHSRGTRVTILDTVLSGTN
ELINAQSVDISICAVPPKGY
ISEPLCEMEFYLVSHPSHPL
AQLTQVDDDKQLAQHLQLVI
KDTGTLGSSDTGWLKAEQRW
TVANFHEAKEILNQEMGFCW
MPRLLVEQDLTEGRLARIYL
LGSQSRKAMMSLVIPNRDRQ
GPAAKLLEQCILQQHKQAQS
DIEQ
>_0003.001302_ ARTH_26JUL04_CONTIG37_REVISED_GENE1305 arth_26jul04_Contig37_revised_gene1305
MLDVRRLRLLRELKIRGTLA
EVADALQYSPSSVSQQLALL
EKEAGVQLLRKTGRRVQLTP
QAEVLVAHTAHLLETLEQAE
ADLAASLTTVSGTVRIAVFQ
SAALALMPGTLTRMAATYPE
VRIEMVQREPETALHETWAR
DFDLVIAEQYPGHAAPRYAE
LDRLRLTGDAIRLAVPGADK
GMPPVRSLEDTADLAWVMEP
RGAASRHWAEQACRSAGFEP
DVRYETADLQAQIRLIESGN
AVGLMPDLVWTGRETSAQLL
LLPGNPHRTVFTSVRRSSAK
RPAILAAREVLAVTADSIAP
AGPVPPEAKSA
>_0014.005213_ YP_111906.1 gi|53722921|ref|YP_111906.1| putative LysR-family transcriptional regulator [Burkholderia pseudomallei K96243]
MGSEIGWELYRSFLGVLREG
SLSGAARALGLTQPTVGRHV
AALEAALRVPLFTRSSSGLM
PTDVALALRAHAEAMESTAD
ALARAATSFGEDVRGVVRIS
ASDVVGVEVLPPIVARLRQR
HPALTVELALTNRVQDLLRR
EADIAVRMTRPGQTQLIARH
IGGIELGLHAHRDYLARCGT
PRDAGELVRHALIGHDRPTA
FIRQIAKSFPGFDRGAFALR
TDSDLAQLALIRCGAGIGAC
QAALAKRDPALVRVLPKAFA
GRLDMWVTMHEDLRGSPRCR
AAFDALAEGLDAYVDEQRAP
AIARRRRPLPGTRSA
>_0030.000120_ DHAF_12NOV03_CONTIG1007_REVISED_GENE141 dhaf_12nov03_Contig1007_revised_gene141
MKLEQLHYLKEAIRYRSLSI
AARENFISQPSFSAAITGLE
KELGVKLLNRSNRGCTPTDI
CMEIMDRADTIFAMVEEIEL
LASNSSYCETINIAVVLSIC
EEILPQVLLEMEADKVFCKV
AVASLEGEAIYPRVASGSSV
LGIVAYIPKLLTADLKYTPL
FEDEYVLYIGQHSPFWEQGS
VSLEQMLSQPYIALGDDFAT
PNSDWAKDILAFSMPKVESQ
VSNLNTLKKMIINGPYVSLL
PRFMVADDIYVKHNLMKPVR
IDDIYLAAQFGYIENTRYKL
TKNYTVFLDYFRKILTRLGY
TVYKTV
>_0020.002700_ CAUR_25MAY01_CONTIG925_REVISED_GENE4047 caur_25may01_Contig925_revised_gene4047
HLTTDPDLQPYSSFAQRLFY
RLVESRYDGLSIAYADAVVC
VSRFTQRMVEATYGRRDTVL
IYDGIDTDVFVPPPGMQRRD
DGLPPANGRIRLLFVGNRTR
RKGFDLLPRIMDRLPEDYVL
YYTGGFQGRDTGPPHPRMIP
IGSPDRDGLVAAYQSCDILL
FPSRLEGFGIAPAEALACGR
PVVTTNVAALPEVVDDGENG
FLVARDDVAGYAEKVQILGE
DAALRRRFGEHGRAKVVTHF
GYRPLGEGFRQLYGRLCGKG
>_0018.007951_ BFUN_06OCT04_CONTIG482_REVISED_GENE7952 bfun_06oct04_Contig482_revised_gene7952
MIWRYPTARLTIGKAGNSDH
FHRIYRIMSQRGFDLTQLRT
FVAVAESGSVSAGAERVFLS
QSSVSEQLKKLEERAGQPLF
VRSKQGVSATHAGSRLLDHA
RRIIAMSEAAFEDLQGRSLD
GELRIAITDYYRPHDIARIL
KTFSEQHPRLKLHVTVLPSA
VIDSSAGDDASFDIGLSLRL
VTGSARGAGRRSGAPGIVVR
REKLLWVSAADSSPRPATPY
PLVLLPSSCQLQRFVVKLLD
EHKVPYVVSHSASGVAGLQL
ALKAGLGISCLNESSIGGGV
VACPASVGLPALPAVEFHLL
PGRIGESERVSNARTALMRL
FS
>_0063.003749_ NP_251611.1 gi|15598117|ref|NP_251611.1| probable transcriptional regulator [Pseudomonas aeruginosa PA01]
MMTTFRCHLGKPVKLHQLQA
LVASADAGGIRAAARALGIS
QAAVTRALRELETEQHLPLF
VRTPSGLTFTEYGKALLIHA
RLVLKQLEHAQVELDHLRGQ
ASGRLCIGVTPWVALTFLSE
AVQAFRERMPEVRLELFESL
MAVAQPLLRDGSMDFAIGPL
HGAQAAQEFACEKLLDYDTA
VLVRQGHPLAGCGSIHELLE
QDWALNYTGDGHDALMRELF
WRHGALIDERRIVRAHSVAI
LQTLVEQADMCTWVPAIIGA
APPLLGRVVPLALRETFEPR
RLGIITRRGGALSNPAQCFV
ECLLQAIRRHARSAKKDDRR
LFETLRLLV
>_0048.002651_ YP_012925.1 gi|46906536|ref|YP_012925.1| transcriptional regulator, LysR family [Listeria monocytogenes str. 4b F2365]
MDIENMKAFNKVAELKSISA
AANELHHLQSNMSNKIKNIE
KQFQTQLFFRHSNGVEPTKE
GEKIYQQFKKMILLWEETID
IINNEEETISIGITQSSLPM
EFNTIIKEFYQQFPNKKLSI
VSGSTSELIPKIANRELTIA
YVAELEKENLFQDSQIISQT
LSWDKLVFAGNTAGKSVQKI
LAEERLYVFSKQCYSYRALA
ALINDINIPNVSISEINIPE
TLVEICNNELGIGIIPESIA
LNYHFLNYETLPTEYASLRK
TLIYHADHTISNGEKWLIEK
SKPAFKS
>_0018.000814_ BFUN_06OCT04_CONTIG480_REVISED_GENE470 bfun_06oct04_Contig480_revised_gene470
MTPTLPDRKQNPPSAPAATV
SLRLLEIFMLVAQEGSVSAA
ANRLNLTQAAVSQAITVLEQ
ALDVKLLDRSVRPPLLTLRG
STALQYAREILAKVHEFEDA
MRYSGSGRVPLLRIGMLNSF
ASTAGAFVLNQLRDIAAEWT
VASGFRETCIQALLDRQSDV
IITTDETPAPSEIEVFPIFS
EPFVAVVPASFDGKTERLQD
IADKLDFIHYGHDSHMGSKI
TNYLKKIGTVPARRYQFDTT
DAALHMVAGGFGWAIVTPLI
YLKSRVEGSGVRVVPLTRLP
IHRTFIVGMRRGEGSDIAQR
VRTAAIITLRDVILPQIEAV
LPEASKGVSVAEIEPKASTG
KRKGSRRDSAGS
>_0102.000714_ NP_111391.1 gi|13541703|ref|NP_111391.1| Predicted glycosyltransferase [Thermoplasma volcanium GSS1]
MQNNESIKITAFGDYKLDEI
PADIRNEIIYYYRLSRKVLL
GLYNKSIIFVLPSIVEGMPS
PPLEAMACGCAVVVTDNGGV
NEYIKDGLNGIVCPVRDSYC
LYQKVILLINNKALREQMIQ
DGLETAKEFSYDNMNKNFIR
LIEEVQRRKS
>_0095.004355_ NP_459744.1 gi|16764129|ref|NP_459744.1| transcriptional regulator, lysR family [Salmonella typhimurium LT2]
MYNATYINETHPMLIRLQLM
QYRHHLELTWLEDCLALKET
LNFSKASASRYVTQPAFSRR
IQSLEEWVGTPLFERSKRGV
TLTKAGEVFTDQLPELIHSL
YTLKSDTLEAAGNKQPSLVF
SATHALSFSFVPHLLKQSDK
IAKFGSFRLLSDSLNACEKM
MRQGDSQFLLCHHHPHMHLN
LNKNNFMSIRLGFDTLIPFS
KPDSETLKPLWNINNKIQFP
YLSFSSQSGLGRIIANTASI
NRITHNINVAFVADLAATLL
AMVRSGDGVAWIPQSLARQD
IEAKTIVTAAEKESNLWVPI
EIRLYRPAKRMPPDAEELWE
IFVEEQI
>_0016.000662_ YP_440334.1 gi|83718200|ref|YP_440334.1| chromosome initiation inhibitor [Burkholderia thailandensis E264]
MTIDPKQAAALVAVADTGSF
EQAAARLHVTASAVTQRVRA
LEMGLGTPLLLRTRPCRPTA
AGQRVLQHLRRMALLQADLQ
AELEAERGSTIAVAIALNSD
SLGSWFLPALTSVLAGERML
FELIVEDQDHTFALLESGMA
IGCVTTQSKPMRGCFSTPLG
TMRYRLIAAEEFAARWFPQG
LTRESAREAPVVAHGRRDTL
QSSFLRDKLGLPDGAFPCHY
VPGTHAHFAAVRHGLGYAMV
PELLLGAVPLAEQRLVDLAP
AHSTDVSLYWHAWTVQSPKM
ESLSSRVVEAARQLLAPLPR
GAATAAAHAAPARVKRANAR
NTR
>_0006.004007_ NP_890102.1 gi|33602542|ref|NP_890102.1| LysR-family transcriptional regulator [Bordetella bronchiseptica RB50]
MDRRVSLRHLRCFLAVVETR
SFTLAASRMFLSQSSLTAAI
QQFEEAVGLKLFERTTRHVE
LTDAGRHFKAEAERVVHGFD
ASIRDLKAFGQGGRMHVHVA
SAPSVVQALLVPAIPHLKAS
FPHITFTVRDADATRIERMV
LNGEIDFALTSRHIAFDELE
YVPLLRDQYGVVYRSSAFRL
EGEGPVRWSSLAAEGYVQFT
PDTALGAMLAALPAAARLYD
EQRDAVSSSTTLYAMLELPG
TYSIVGALSAGTGPFPEFDF
RALVDPVLTREICLVTRRLR
YMSTSARRILQALLEVFDRI
ALPQGVELLRRDARSDPGSQ
AATDGAGPSSPTL
>_0115.003225_ YP_001336267.1 gi|152971158|ref|YP_001336267.1| putative transcriptional regulator (LysR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
MKTLQYSFAQIEAFATIAET
GSLSQAAIRLAKDRTTLRDL
LDYLEDALGYRLFSREGRSL
TLTAEGEQLFRQAHLLLRQA
QAFESFAQTLPQTAGQALRL
VYDPFVPREFLCALADNLAR
RQIRLSCWSASRREAEQALS
DGVAEMAICQANNRTLGSEM
EWRALGTVDLRFYAADSLFH
DAPRPLTLLNLSLTPQLVMH
RRSDDQIARRLQISGHTLYM
NEITLLRHALEQGRGWGFLP
DHLRPGEWQGVSEIATEVGS
QGLNVTMVMLWLPGMNKHRM
LSDIVHEAPELWLRR
>_0045.001254_ LBUL_20SEP02_SCAFFOLD73_REVISED_GENE1875 lbul_20sep02_Scaffold73_revised_gene1875
LSEMALSESGKLSIGVAEIV
AHKFITDVIKDYRQVNPEYR
VDFNLKRAVTGKLMDMLQSG
ELDLAIVTTRPGEKIAGFDL
VSMMHRKLELLLPAGHELAK
QKSVSLKQIEQYPYLAFGKE
HALAGIIADVFAKNDIHPQI
SSVTDDVRTLVAIGEGVALL
PKSKYNESAGDIAVPVTEDT
SYTISLASRNLAQEPKVAQK
MASFIVDFCQTRGLTWS
>_0070.000759_ PPEN_30JUL02_SCAFFOLD2_REVISED_GENE587 ppen_30jul02_Scaffold2_revised_gene587
MQTKTEKIFSSKTLSYFLRL
TDTMSYTQSAQLLGITQPAL
TQQIKKLEHAVGAPLFYTLG
KKLRLTDAGYTMLNATHEIN
RILNHATDEIQQATSSGRGD
ISVGILASLETRIFEDFIAN
YYNNVPEINVTVHMLTRFEI
WEGLESNRLDFAITYLPDAN
IRSWKPYRARKIGTERLVFV
HHDERLSKARGVSLKRAAAF
DWVSYPEGYYLDDLITEVFK
DAMVTKPKSVAYFTTPAQIL
SFSNSTGIATALPESFVVAH
QDEATDAYITKFDPKISYEI
GFVYRKDKDKIPRMNAFLSA
FFEYMDGEKYIDKVRNLTTK
KDD
>_0073.006185_ YP_298080.1 gi|73537713|ref|YP_298080.1| L-carnitine dehydratase/bile acid-inducible protein F [Ralstonia eutropha JMP134]
MGRCSFGRRLKSISGRTGSA
VRNQDCPRCAGLPLSKPFRL
TRSGTDMTPPLAQTTFSRNA
PQDRGPLAGVRILDMATVVA
GPFSATLCGDMGAEVVKLEL
PDGSDPLRSLAPVKDDVPLY
WKVTNRGKRGITLDVRTEAG
RELFLRMLGEFDVLVENFRT
GTLARWGLDLATLHAANPRL
IVLRLTGFGQTGPYAARPGF
ARIFEAMSGLTNLAGTEESG
PMHMNFPIGDMIAGLFGAFA
ISTAIAERRANPELRGREID
LAATEALFRLLEPLAVEHEQ
LGVVRQRAGNRATYTAPSNM
YRTADGVWMTLVASSDATFR
RLAEAMDQPQLPLSPDFAVN
AARIRNLERLDALIAAWFAA
RDADAVSAALERCDVPFSKV
FTIADVMADAQMQARSAVIR
MPDPDVGSVPAPCVVPRFGG
YQPPAPRTGPATGEHNDEFY
TELGLGKDDLARLARDGVI
>_0013.002134_ NP_880585.1 gi|33592941|ref|NP_880585.1| putative transcriptional regulator [Bordetella pertussis]
MQETDSGAGPRTLRRGLMVL
AALRDQGPRGLSVTDIARQT
GIQRPTIYRLLAALLDAGLV
VPLQGTKKYRTQLAADADLA
APNPRVRQMLPVLRRLADRT
GDAVFLVVRDGDDSVSLHRE
IGSYPVQILATYAGKRQPLG
VGSGSMALLAALPDEVAHAI
VQRNSGRLDEYGGMTPQEMH
RLIENTRARGYSVVGNHAVR
GALGVGCALLDAQGAPVLAV
SVTAIIDRMPAQRQREIAGW
IGAELARLAPKA
>_0030.003364_ DHAF_12NOV03_CONTIG875_REVISED_GENE3848 dhaf_12nov03_Contig875_revised_gene3848
MLARFGALHPGVALEVINDV
RVFNLARREADLAFRFGSFA
QENLIERRVGDVAYALYASE
AYLAEHGRPDPADGFDGHAL
VLMDHAAGAVAHEAWLPPLA
PRARVALRANGLRAHLSAVR
DGAAMAVLPCLLGEREPQLR
RFDLAPQPVVRAVRVGFHSD
MRQTPRLRALVDFAVAEFER
QSERLCPPDLRR
>_0093.002910_ NP_341669.1 gi|15897064|ref|NP_341669.1| Competence damage protein (cinA) [Sulfolobus solfataricus]
MVSIVNIFMDYWFAEIITIG
NEVLSGKTVNTNASHIGRRL
TSLGFTVRRITAVMDEVDEI
ASAFREAIDRKPRVIVSSGG
LGPTWDDKTAEGLAKALGVN
LELNKTAFDMILEKYMTRKI
PITEERKKMAYMPYGAIPVE
NNEGIAPGIYVYHNNIDILA
TPGVPREMENVLENFINKML
RNRSNLKYLEDFIYVENVME
SSLAPYVKELVKKYDIYIKT
HPKSYEMSHPILEIQIAGSG
KQEEEIKVKIEKVKFELLDA
IKKLNGIIRNSL
>_0052.000186_ NP_103224.1 gi|13471658|ref|NP_103224.1| probable transcriptional regulator [Mesorhizobium loti]
MLDAADASAPQEARTRINTM
QDFRVRKAIQLMKANVCERI
SFDDVARSVGLSRPHFFALF
KEQTNLTPNVYWNTLRMEEA
VRQLQWSQEPLISVACNLGF
TTQGNFSRFFRDHVGVPPTL
YREAARANA
>_0030.002452_ DHAF_12NOV03_CONTIG1080_REVISED_GENE2791 dhaf_12nov03_Contig1080_revised_gene2791
MSVQTIEAMAKWVEDNIAKN
PTLTEMSAYVGYSPYYCSAK
FHEHIGMTYKQFLARCRLKA
AAGDLANTNDKITEIAFRYG
YSSSESLTRAFVAAFKCSPS
QFRKSSPDIPVSEG
>_0113.000641_ YP_001087995.1 gi|126699098|ref|YP_001087995.1| putative transcriptional regulator [Clostridium difficile 630]
MMVLNKDIGAKIKQLRTQKQ
MTLKDMSEKTNLSIGFLSQL
ERGLTSVATDSLGKIASVLD
VELTYFFMKPKEHKRAVLRS
YEKEVFDVENSTFIHYHLSS
SLKEKTMLPRLIEILPSKSS
EEICCYVHEGEEFVYVLEGT
LTVFLGDEQIEMYPGDTIHY
NSEKNNHNWVNYTNKVVKIL
VVSIPNPFEKSDAVKEA
>_0012.001992_ NP_882815.1 gi|33595172|ref|NP_882815.1| putative dehydratase/racemase [Bordetella parapertussis 12822]
MNLDFLKGVRVIESSAFIAA
PLAGLTLAQFGAEVIRLDMT
GGGIDYERMPRMPDGTSLYW
TGLNKQKRSVALDLRKPEGR
DLARKLVCAPGPDAGILLTN
IGVPWLSHAALAEGRPDVIT
CTIEGNADGSSAVDYTVNCA
TGYPHATGDGREPVNSPLPA
WDACCGYQAAMAVVSAVLRR
RQTGQGAELRLALSDVAFAL
MSHLGTLAQAELLGEDREPL
GNHLYGAFGRDFVTRDGNRV
MVAAISKGQWQSLVRTCGLA
EAVAAIEARTGAKLAEEAQR
FAHRDAIAAACEPWFRARTL
AQAKTALDDGGVCWGLYQTA
TQMLARDGRAGSANPLFEWI
ATAGAGEHWALGTPVREPRA
TRQPTQGASRLGQHTDQVLG
ELLGLSARQLSDLHAAGVVA
GPSGDPRGAH
>_0118.002178_ NP_266533.1 gi|15672359|ref|NP_266533.1| LysR family transcription regulator [Lactococcus lactis subsp. lactis Il1403]
MFSLFETFIVVYETKSFTLA
GKYLFISQPTVTVRIKKLEE
ELKSTLFLRGKHQEIIPTEA
AILFYPKAIAYLKKWEEDQA
EVQKKSLAKHPFKIGVSHSA
ALSIMPGIFKVFEGELEHLD
VEINMYDSEKVFELVANHDL
HFGIIERLLISDQTETFPLF
LDELVLAGNTDSETFFTRES
GSGIGYYIKRYLKSAPSAQR
NIVRMNSNEMIISHIKAGLG
SSLISKSFLTDDIPYQELGS
NYHREFLGVSFDEEKDPMIQ
KLISKIKKETEIH
>_0018.006957_ BFUN_06OCT04_CONTIG482_REVISED_GENE6958 bfun_06oct04_Contig482_revised_gene6958
MRRSTPSHTAADPVKEKDGS
GEEVTALARGLTVLRAVAAA
DAPLSNRDLTELTGIPKPTV
SRITATLVGAGFLFRLPDSE
RFVLTSSVLELSNGFLRNFD
IRARARPFLIELAERTALSV
HLAVRDRLDMVVIDAIRPRS
AVLVSRLEIGSRMNLSRTAI
GRAYLAALEAPEREKLLIGL
QAAEGDDWGHVGNRLDSALQ
ETIERGFAIATGEWYDGLNA
IALGFTGPSGERYAVNCGGS
ADQCPRDWLITRAAPALLEC
VANIVLEIGGTPGRRLDT
>_0011.004359_ YP_106473.1 gi|53716160|ref|YP_106473.1| transcriptional regulator, IclR family [Burkholderia mallei ATCC 23344]
MTNQTDGGVAAVNRALAALV
AFGEAPGGLTLAQVSEASGV
NMSTLLRMFESLERFRFIKR
LNDGRYVLGPAVFQLGMMYR
ESFQLREHVMPVLDALGAET
GETTAFYVREGDQRVCLFRV
HPRRAVRTYLREGDRYPLDV
GAAGRVLLAFSGARGGSFDK
TAAQGYAVSLGERDPDSAAI
ACPVFGVGRALIGALSLGVP
RFRFNKKVQADYLPRVQAAA
NALTHALGGDLPPAAGVAQV
VDLFGAAHE
>_0056.000414_ SARO_25NOV03_CONTIG24_REVISED_GENE445 saro_25nov03_Contig24_revised_gene445
LRIREVSCLAQCLCKNARHL
NGNWVRHMEWSDLEVFLAAV
RTGSYTAAGRQLGINRTTIG
RRVEALEKSLGLPLFEKNPL
GYAPNAAGARLLATAEAVER
EVAAMLHDIGGAARQSAPVR
IASSGGIASEFLPEIAAFRR
ANPDVPVELLGELDPLDAVT
QRRADLGIALVRSLPLRLAG
TQVATLSQAPYGRRHAGALQ
SLGWGYEFDAALPGGPWSAN
PAGEAAQAAGLVTFNAWPQL
KQAVMAGIGKATLWCFAADA
EEHLERLAPPDPRHDCPLWL
VHRAKAPPGPGLARLIAFLD
NAIAARCDGKRAATP
>_0120.002791_ YP_001303560.1 gi|150008817|ref|YP_001303560.1| glycosyltransferase family 4 [Parabacteroides distasonis ATCC 8503]
MITCFFRKKREGVNSIEMVF
STIESLLPLHTSIQLPYEGA
SPKVLFGNILFAHRNKAKIN
HITGDAHYIALGLGRNTVLT
VHDVQSALQINNPLKRLYVK
LFWFWLPALMVRRITVISEF
TKNELSKIIPFAKNKILVVH
NAFNPTIKYVKKIKDNRPVI
LHMGTKPNKNLERVVEALKG
MDCLLIIVGKMSEKQLLLLE
SSTIDYENHYDVGYEEIVRC
YQRCDIVSFPSVYEGFGVPI
LEANAAGRPIIAGDIPVLHE
VANDAACFVNPYSVDSIRSG
FVKVIEHDEYRKELIAKGLK
NIERFSPKAIAEKYNEVYKE
LSDE
>_0078.003353_ NP_828217.1 gi|29833583|ref|NP_828217.1| putative transcriptional regulatory protein [Streptomyces avermitilis MA-4680]
MNSVIQNIGRNVSDLDLLTQ
SLARNVKRWRTERGFTLDTL
AARAGVSRGMLIQIEQARTN
PSIGTVVKIGDALGVSVTTL
LDYEQGPKVRIVPADQAVRL
WHTDAGSYNRLLAGTEAPGP
LEMWDWLLMPGEGSPSDPHP
NGSVELVHVTAGELTLTVDG
VVHHVPTGASVSFEANVPHR
YANSGDAPLEMIMTVSVPPV
R
>_0099.002226_ TFUS_04MAR05_CONTIG93_REVISED_GENE3001 tfus_04mar05_Contig93_revised_gene3001
VHLAHAVHDHRFGETAVKRE
LRAAGITDPQLCAAYLHCRT
LHAHHGRTYYLATLTLPPQR
RPAIHALYGFARWVDDVIDA
PRTALPVEARAALLSEVGTE
LTAALAGGEDVHPVVRAVAD
TARRYEIGAELFTAFLRSMR
MDLSTTDYASFEDLRGYMYG
SAAVIGLQVLPVLGTVVPLP
RAAPHAAALGEAFQLTNFLR
DVAEDLDRGRVYLPADILAR
YGVDRDLLLWCRAHRRGHPR
VRDALAHLVALNREIYRTAA
PGIAMLDPVSRPCVATAFTL
YQGILDVIEASGFDVWSGRC
TVPQWRRVQVAVPAFARAML
RRAVSGRRANSGVAPRMSGA
RSYGGN
>_0035.002793_ NP_816744.1 gi|29377590|ref|NP_816744.1| PTS system, IIA component [Enterococcus faecalis V583]
MLGIVIATHGALSDGAKDAA
TVIMGATENIETVNLNSGDD
VQALGGQIKTAIENVQQGDG
VLVMVDLLSASPYNQAVLVI
NELEPALQKKIFVVSGTNLP
MVLEAINHQLLGTPIAEAAQ
AIVAQGKESVQAWDISMTSF
EDEEDEDDDF
>_0085.001193_ SHEW_20DEC04_CONTIG138_REVISED_GENE1194 shew_20dec04_Contig138_revised_gene1194
MDVKVFKTFLEVARTRHFGR
AAENLYITQAAVSARIKQLE
SFFDSALFVRNRNSIQLTTS
GERLVPYAEVMVSTLEQAKN
ELALTNHKALQLTMAGTPNI
WDAYLQHCLSKVTDAFGGYG
FLAEALSREQLNRNLLERTL
DMAFAFDPLKSEELVCKQVA
DLILVLVSTRPCDQSEALSD
KYVYVDWGTRFASEHAERHY
RMPPPYLRTSTGRIALDFIL
DKAGAAYLPLSIVEPFLQSK
QLYLVEGVEPWNRPIYLSYR
KDSGSLEAIIKIEELVKEID
PLTAFSLQQIGQLG
>_0109.000794_ RER070207000795 REr070207000795
MKVLNLLSAGGIGGIEQLCS
NIAKYANYDNTFCFMFEDGQ
IYKEMKKSGADVISFAECSS
KKISKKRWESLCELAEKADI
IVTHHCTIALHIYYCALKKR
FKNKKFVMTIHSCFDPELNY
NYGSWIKNKIAKWNIEEALK
ISDKIIFVSEAGRRSYLDNF
NIDVTKTKVIYNGVEVSAIS
IDSIKLENNYTRITYIGRVE
KIKGLDLFVCALKKLLNDDS
NIKVWIIGDGSFRNELEMLV
QKLDLTGVIEFTGAKRNIGD
YLRKTDLFIYPSTCQEVFGI
SIVEAMSYGVPCVANNVGGI
PEIIENDYNGFITSKTNDDE
LYKCMYKFIKLDPKLITQMR
NNCLLTAEKFSINCTIDNLE
KTLKGMM
>_0073.002805_ YP_296195.1 gi|73541675|ref|YP_296195.1| regulatory protein, TetR [Ralstonia eutropha JMP134]
MSQTDSGRTESARTESGICP
PKTPRGQKTRESLLRAAEKV
FGEKGYYVASISEITQEAKV
AMGTFYLYFKDKEDVFRALV
QHMLELLRTHLRKHVAPATS
QIEAERLGLKAFLSFVSRHK
NLYRIVLDSYSVDETIYSGY
FQVFADLYSRRLSRAAEQGE
FRPGDAEVRAWCLIGISNFL
GMRYALWKRPASMEKVVDAA
FDMITHGLQAR
>_0072.001618_ PROC_21JUN05_CONTIG39_REVISED_GENEPMN12A1623 proc_21jun05_Contig39_revised_genePMN12a1623
VKTSKEITINKKNKFGAEIL
CIGSEILLGNIVNTNSQWIA
AQLAILGIPHFRQTVIGDNP
ARLEEAILEASNRSEILITT
GGLGPTPDDIKTKVIADTFK
TPLEQRNDILIDLRNKSKDK
VSKLSESQKKQSLVPKGAKI
INNYSGTAPGIFWSPKENFT
ILTFPGVPSELKEMWAKEAS
KLLISNNLSKEVISSKVLHF
AGITESLLADKIQHLLISKN
PTVATYASTGSVKVRITARG
KSSEKTNRLIEPIKKELTQI
TGLKCFGLDNETLEEIVFKL
LLKRKETIAVAESCTGGGIG
SKLTKIPGSSQIFHGGVIAY
NNSIKQRLLGVPEEIINTHG
AVSKQVVESMARGVQIKFKV
NWAISVSGIAGPTGGSKSKP
VGLVNFCIKGPKTLITWEEN
FGSNKTREDIQKLSVLNALD
RLRLSIIMAN
>_0061.003249_ NPUN_22DEC03_CONTIG1_REVISED_GENENPR0003 npun_22dec03_Contig1_revised_geneNpR0003
MKRPGFIERHHLWTEIQKEA
SEKIKTIVKEQDLLLIRTAW
SDQHGIVRSKSLLPQAFFSA
LENGMQISTGTFLLDTGGAI
VFNPFVPGGSLDMPLMTGAP
NLVAVPDPDTFKIVPWAKRT
GFILCDEYFQNGQPMPFSSR
GILRQSLIDLHQRGLEHIVG
LEVEWYLAKLEDPMLAIANV
GSSGKPGEPAKVSAVDHSFQ
YLLESHNPEIQDLLGLLAEN
LVEMKLPLRSVENEGGVGQF
EFTFDPIPALQAADTMMIFR
MATKQICRQQGYIASFMCRP
GLQGSSSNGWHLHQSLVDLT
TGENAFMSANSQTLTSDLAK
HFVGGLLKHANAASVFTTPT
INGYKRFRPYSLAPDRAGWG
LENRGAMIRLQGGFDDPSTH
IENRVGEPAANPYLYMASQL
ISGLDGVDCKLDPGSPTEEP
YTTENPILPKSLSEAISYLS
QSELFPQKMGQQFINFIIKM
KESEINRFLQSVADQPPEEY
LKQVTNWEQREYFELF
>_0086.000526_ ROSE_TM1040_30MAR04_CONTIG46_REVISED_GENE527 rose_tm1040_30mar04_Contig46_revised_gene527
MHTFTQIDLASGLWEIFGKI
RKNMSETTGKESSFSADTHS
AVLDEGEKQRIRLELGRRVK
GLRSAAGMTLEQAAERTRLA
VSTIYKIENGKVSPSFENLL
RLARGYGVGLEKLIAEPEDE
VHTTRLTVTRAGQGRSVEGK
VYDYEVLCNGLTGKKIIPLI
GTICAKGEGVPAHLDRHDGE
ELLLVLEGEVELRVEHYEPV
ILAAGDCAYYDSTLRHGVRS
TGPDKARVFWACTHLGALS
>_0003.001719_ ARTH_26JUL04_CONTIG41_REVISED_GENE1724 arth_26jul04_Contig41_revised_gene1724
MADSRASRTSDGLGSASPAP
AVTRAAAVLEALAASATGRL
TLSDLSRELGIPKSSTSNLL
LALEEARLINRQGADFTLGR
KLVELGAAYLSRLDEVQEFY
RFCEQAPTLSGETVRIAMLD
GTNVIYLARYEGHPAVRLTS
NIGDKMPVSLCAVGKALIAR
LHDHDIDELFPDDAELPVLT
PKSLRTGAEFKKQLPVIREQ
GYAFEDEESTTGVVCLAVSV
PTRGAHGPSLGLSVTALKAT
YSQEQGAMMVKELKELARSL
GNPMG
>_0110.001926_ YP_001297727.1 gi|150002983|ref|YP_001297727.1| putative RNA polymerase ECF-type sigma factor [Bacteroides vulgatus ATCC 8482]
MNQTTHKMTDPIQIKHYKED
ITSFNQLYKEFQRRFVRFAN
TYVRDLTTAEDITIEAMMYY
WENRQSLSEDSNIPAYILTI
IKNKCLNYLRHQQIHEEYSD
KIKDYYEWELNTRIATLQAC
EPYELFISEIQELVQQTLTD
MPEKTRTIFMLSRYENKSYK
EIAVLMNITPKGVDFHINKA
LKMLQTNLKDYFPLFLYFFM
KCH
>_0088.003349_ NP_718851.1 gi|24374808|ref|NP_718851.1| transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
MISSSTVHAFYFSAKYSSFS
RAAEILETTQPNISGQIIKL
EKDLDTILFIRKQGRVSLSK
EGEKLYLVAEKIVNSYKEFD
SVVEYFFEEEPIVIVTQPRL
YTKYVAPYLTDDLINNNLFH
IKTGELTAIKSWLDKEDADI
VITEGLFDSHSRYINEGVID
VLKFSWAKKVNEQFDSPCPT
LVHSKVWDHWHDLSSALNRN
KEFKRKLIIDTPDFAERLIE
SGVGIGLLPNVMISNNANLE
VCHGPTRNNVLGPICLYSKK
YSQHKNLRSLVNMFKKESSD
S
>_0054.001352_ NP_987476.1 gi|45357919|ref|NP_987476.1| Glycosyl transferase, group 1 [Methanococcus maripaludis S2]
MLKKRILVIAPHYNSFVKGQ
VDEISKSVEHIDLLIKYNPL
TEISNYIPHKNSKHFQNFRK
KNLATFKDKPSNVSVHLIPT
VYFKPDGKNKKLGDMLFKKF
DKYIQKNNLNFDLIHAHFTW
PYGYVAMKLKEKYNKKVILT
VHENRNWLIKEYESKNKKFI
TTWKNSDVIIRVNKKDIPLL
KRYNENTVNIPNGYDEIIFK
KIENIDKIKEDLNIPKNKKI
ILNVANYVIPHKNQLNLVKA
VYELQKKRKDFILYLIGNYT
GDEKKIINLIDELNLKDVVK
VLGPKPHDEIPLWMNVADLF
VFPSYSESFGVVNIEALACA
TPVISTINGGSEEIITSEEY
GFIYTNPEDYEKLAELIDKG
LNKKWDSAKILEYSKEFTWE
NISEEILNLYSTDI
>_0084.003399_ SFRI_16AUG04_CONTIG89_REVISED_GENE3402 sfri_16aug04_Contig89_revised_gene3402
MKVAIVIHDLKGGGAEKMMM
RLANAISKQHHEVDLVLLTN
GGTNKDLLDNGVNLIELNSL
RTASSVPRLRQYLKINSPDR
VLSALTHVNVITFIACLSLG
WLSRLHCSERNAFSFDKDVN
KSPLIKFAYFLAPFLYRISP
NPVIAVSLGVALDLIETTVV
CPKNVINLPNPTLNDNYKTH
IFLAPSHPWLSDKTKPVIVG
LGRLAQQKGFSDLINAFALV
REKIDSRLIIFGEGELRIKL
QTQIDNLGLTDSVSLFGYVR
APMDEVHSADVFVLSSLFEG
SPNALVEAMASRCKVVSTRC
PCGPDEILIQGALGILVPVK
SPNKLAEAIICSLLDADYDF
ENQLDKIERFTANNSASAYL
SAMGIHGV
>_0084.002641_ SFRI_16AUG04_CONTIG85_REVISED_GENE2644 sfri_16aug04_Contig85_revised_gene2644
MQHLNYNHLYYFWMVQKKGS
VTKAAEALCLAPQTITGQIR
ALEERLKGTLFKRVGRNLVA
TELGELVFRYADKMFSLSYE
MLDLLNYQKDKSLLFEVGIA
DALSKALVSRVLLTVIPDDS
SVHLACYESTHESLIERLRE
HKLDMILSDCAGGSLKFPEI
LSKKLGECGVSFFSAETISV
PFPACLEQRKLLIPGKRTSL
GQQLHGWFAEKNLNVSILGE
FDDAEMMKAFGYFNRGIFVA
PSIYRHDILSQGMVLLGETT
DIKEEYHVMFAERMIQHPAV
KSLLATDFSDLFAGRDLQVQ
DFENRIS
>_0046.002543_ NP_472028.1 gi|16801760|ref|NP_472028.1| hypothetical protein lin2699 [Listeria innocua Clip11262]
MIKLTMLSSAEKVKGQGVAS
AYRELVNLLEERYTNEIDMK
INSFEKSDITHYHTVDFRFF
LSTFFKKKRGVRVGYVHFLP
ETMEGSLKLPWIARVVFYKY
LISFYKRMDEIVVVNPSFIP
KLTAYDIPEEKIHYIPNFVS
KKTFFPISTAEKKLAREKYG
IPADKFTVIGIGQVQHRKGV
LDFIEVAKQLPHIQFVWAGG
FSFGKITSGYEELKKIYDNP
PANVKFIGIVDRSEMNACIN
MADLFFMPSYNELFPMAILE
AMSADVPILLRNLELYEEIL
TGYYVKEVDNPGFIRAIERL
EHDTDYYNEMLQAAKEGATY
YSEDRLAKIWFAFYQGLLTK
E
>_0043.000072_ JANN_22DEC04_CONTIG12_REVISED_GENE100 jann_22dec04_Contig12_revised_gene100
MNTRLRAVFCDHLSIMRGKY
LPGSKIGDDDTRFCRSVFGV
HYDKDLLPAPGSMMMEGLPD
MELRWREEDIRDSWEADTRI
VIGDLFDTDGTRLPLCPRGA
LKRTVADWQARGLTPKVGIE
LEAFAFVHDADGKLIPYDSF
GGVVYGTGAFTDPRGFNDAI
WEVADALGFRLDMITAEYDS
PQFEYTLTFDDAVQAVDDIV
LFRQMAREVALGEGVILSFL
PKPIAAAGGNGMHINFSFTD
EAGANALSEGGQSGPDHLNY
LAAGCVAGLIHHHKGLAGLI
APSGNSYDRLQPASLSGYWQ
NWGGDHRNVTTRVSSEGGAK
ARLEHRMADAAANPYTAVAA
VLQAARLGVEHGYELPPKEA
GDGFEHTAAEAGVAPDLATA
LEDLSADTLLAEAVGQGLVE
NHVFMKTAEVEKTAGLEPEA
LRDFYIPYL
>_0038.000321_ NP_280449.1 gi|15790625|ref|NP_280449.1| phytoene synthase; CrtB2 [Halobacterium sp. NRC-1]
MVEKTHITTSKAIQRRTGKT
FHLATRLLPTRVRHATYVLY
AFFRVADDVVDTTADRDPGV
QREELEGIRAAALGARDPES
VAADTEVLAAFRELATRHGI
SDEDIHTFIDAMQADLEKTR
YESHAELEEYMRGSAVAVGY
MMMDVMEVAEPETAAPHAAA
LAEAFQLSNFLRDVAEDVHE
YDRVYLPAESRADHGVTVEQ
LRARTVDAGFREAMREELAY
TERKYRTGVAGIEYLPEDCQ
FAVLVSAVLYADHHRAIRER
DCDVLTATPSLSTPRKLWLV
AKTRALWALNSSPEAVFYRA
TGLAETGDSRRRHGDPQPTP
SR
>_0034.003428_ NP_416752.1 gi|16130184|ref|NP_416752.1| orf, hypothetical protein [Escherichia coli K12]
MLKVEMLSTGDEVLHGQIVD
TNAAWLADFFFHQGLPLSRR
NTVGDNLDDLVTILRERSQH
ADVLIVNGGLGPTSDDLSAL
AAATAKGEGLVLHEAWLKEM
ERYFHERGRVMAPSNRKQAE
LPASAEFINNPVGTACGFAV
QLNRCLMFFTPGVPSEFKVM
VEHEILPRLRERFSLPQPPV
CLRLTTFGRSESDLAQSLDT
LQLPPGVTMGYRSSMPIIEL
KLTGPASEQQAMEKLWLDVK
RVAGQSVIFEGTEGLPAQIS
RELQNRQFSLTLSEQFTGGL
LALQLSRAGAPLLACEVVPS
QEETLAQTAHWITERRANHF
AGLALAVSGFENEHLNFALA
TPDGTFALRVRFSTTRYSLA
IRQEVCAMMALNMLRRWLNG
QDIASEHGWIEVVESMTLSV
>_0024.003333_ CHUT_08NOV04_CONTIG199_REVISED_GENE822 chut_08nov04_Contig199_revised_gene822
LNIAVNTRLLLEDRLEGIGW
FTYETLKRITEQNPQHTFHF
FFDRPYNDKFVFGKNVVPHV
LFPQARHPFLWYIFFEWSIP
FMLRKVKADAFISTDGYMPK
SSKVKVLNVIHDINFEHRPQ
DLPKRVANYYKKNMPLFAQK
ATRLATVSEFSKQDLVKTYN
IPADKIDVVYNGCNAAFKPI
PEAEQVKVRYKHSAGRPFFL
YIGSMHPRKNILNLMKAFEV
FKKMTNCDMKLLLVGKAMWS
NKDIQSLYHTLIYRHDIHFL
GHIKTAELARIMASAHALTF
VPYFEGFGIPILEALNCGVP
VITSNTTSLPEVAGKAALLV
NPESSEAIANAMIQIYKAPH
IREKLLAQGVIQRQKFSWDK
TAALLWASFEKMMR
>_0021.001260_ NP_421916.1 gi|16127352|ref|NP_421916.1| Rieske 2Fe-2S family protein [Caulobacter crescentus CB15]
MLGASQPYDLGPGIRRGSRG
KGGAMTQIPNHDPLSDWGLP
GWIYTSERFFKEEQDKVFRP
SWQIVCHLNDIPKAGDFHTF
DFIGESLVVVRSKDGGVRAF
ANVCRHRGARLLDGPVGRCG
GRIVCPYHAWTYDLEGRLIG
VPMRDDYPALDMAKEGLATI
EVEVWRGFVFVRLEGDGPSV
ATMMAPYEDEVAHYRFEELQ
PFGRVTLRPRAVNWKNISDN
YSDGLHIPVAHPGLTRLFGK
GYGVEAEAYVDKMWGQLIDE
PSESPSERLYQDILPDVAHL
PGDRKRLWTYFKLWPNFAFD
IYPDQVDFMQFIPISAEQTM
IREIAYALPDDRREMKAARY
LNWRINRQVNTEDTELVARV
QQGMASRTFTAGPLATSEVS
LRSFGRKMRALIPESRMPRP
PEGW
>_0016.000389_ YP_439806.1 gi|83717696|ref|YP_439806.1| transcriptional regulator, IclR family [Burkholderia thailandensis E264]
MTAYFPYPCFHPTHPIDNMN
ARKPRPAGPADEPQDLDDAD
RYRAPALDKGLDILELLSER
KDGLTRTEITKELGRNASEI
YRMLERLVARQYVIRSPGGD
RYSLSLKLYALAHRHPPMHR
LIAEALPPMQRFADAAEQSC
HLSVYDRGNLLVIAQVDGPG
IWGMSVKLGSRVGLVDTASG
HAMLAFQSAEQRAHMLAEHT
KVKGEQPLAARNLDARLDAI
RAAGHVQQDSRQMFGVTDVT
HPILGPAGHAIAVLTCPYIR
RIDAYVAPPLDAVVALLHDT
AAGLSMVGEAAV
>_0108.0001294_ YP_460432.1 gi|85858230|ref|YP_460432.1| glycosyltransferase [Syntrophus aciditrophicus SB]
MMRLLCFIDYLGSGGAQRQL
TFLARHLKKSGVDVEVLTYH
ESDFFIPVLAEAGINVETVR
GGGRFTKVFSLRKSIRARKF
DVLLAFLNAPALYAEIAALP
RRRWGLVVSERLAVPGSSMG
FARFRRYLHGLADYVTTNSH
TNRLLIEKAVPGLTGKVVTI
YNALDLEYFSPLQGPVPAGD
GRLRFVVLASHQLKKNLLGL
VEAAHQVVQAAPELDFTIEW
FGRFDAGKNGPGDTGPFEQA
KRRIETFRIQDRFIFSEPTS
DVAAVYRRADALILPSFYEG
LPNVVCEAMACGRPVLMSNV
CDAENLVREGDNGFLFDPRD
PADMARAILRFAALSGDDRK
LMGEKSRKRAVILFNPERFA
AHYRRVLESAMRREQTIIPH
WCESIPQSAIRMIENEK
>_0074.003512_ RRUB_10JAN05_CONTIG98_REVISED_GENE760 rrub_10jan05_Contig98_revised_gene760
MGIRVSTISRCIGHLEDEIG
VALFLRRPNGVTLTFAGEQF
LVRARRAMTEVRHAICEAGI
AGTGRNGFVRLGLLSSLAAP
FPAMLIKIYCAAYPGVRILY
SEGGAADHRAALQHHRLDLA
FLPHPEKAEGCDALGLWEER
LFAAMAQDDPLTRHDVVTWD
DLRERHFIFSEVPPGPELLD
YLTERLVGFGFLLKADLLTV
YRDTVMRVIANGSDVTVIGE
ARVSHPIQGVACRPITGESL
FFHAVWLPTNDNPAFRRFLS
LAKVLSKQCSVCELKEGLAG
PSGEDHSVMDETSASLERKS
RLLKIVSERCATCLLKKAIA
D
>_0052.002647_ NP_107697.1 gi|13476127|ref|NP_107697.1| transcriptional regulator [Mesorhizobium loti]
MMTDGVVERSRPRDRILETA
RDMFHKHGIKGVGVDAITEA
AGTNKMTLYRHFESKDELIV
ECLRANAAKAGAMWDAFEAE
FPGDKLAQLHAWVRKAAAML
NADGRGCDMANAAAELTEPD
HPARLVIKELKEAQRERLVT
LCRGAGIGQAELLADTLSLL
FEGARVSVQTVGAEGPSTQF
VRMAEGLIVSFRGTAAG
>_0034.004713_ NP_415136.1 gi|16128586|ref|NP_415136.1| putative transcriptional regulator LYSR-type [Escherichia coli K12]
MANLYDLKKFDLNLLVIFEC
IYQHLSISKAAESLYITPSA
VSQSLQRLRAQFNDPLFIRS
GKGIAPTTTGLNLHHHLEKN
LRGLEQTINIVNKSELKKNF
IIYGPQLISCSNNSMLIRCL
RQDSSVEIECHDILMSAENA
EELLVHRKADLVITQMPVIS
RSVICMPLHTIRNTLICSNR
HPRITDNSTYEQIMAEEFTQ
LISKSAGVDDIQMEIDERFM
NRKISFRGSSLLTIINSIAV
TDLLGIVPYELYNSYRDFLN
LKEIKLEHPLPSIKLYISYN
KSSLNNLVFSRFIDRLNESF
>_0116.000991_ YP_193868.1 gi|58337283|ref|YP_193868.1| galactose mutarotase related enzyme [Lactobacillus acidophilus NCFM]
MDYTIENNMIKVVISDHGAE
IQSVKSAHTDEEFMWQANPE
IWGRHAPVLFPIVGRLKNDE
YTYKGKTYHLGQHGFARNAD
FEVENHTKESITFLLKDNEE
TRKVYPFKFEFRVNYNLMNN
LLEENFSVVNKSDETMIFGV
GGHPGFNLPTDHGENKEDFY
FDMHPSVTRVRIPLKDASLD
WNNRSLAPTDSLIALSDDLF
KDDALIYELRGNDNKVSLRT
DKNKFHVNVWTRDAPFVGIW
SQYPKTDNYVCIEPWWGIAD
RDDADGDLEHKYGMNHLKPG
KEFQAGFSMTYHSTTDEVK
>_0083.003067_ NP_838400.1 gi|30064229|ref|NP_838400.1| putative LYSR-type transcriptional regulator [Shigella flexneri 2a str. 2457T]
MDIFISKKMRNFILLAQTNN
IARAAEKIHMTASPFGKSIA
ALEEQIGYTLFTRKDNNISL
NKAGQELYQKLFPVYQRLSA
IDNEIHNSGRRSREIVIGID
NTYPTIIFDQLISLGDKYEG
VTAQPVEFSENGVIDNLFDR
QLDFIISPQHVSARVQELEN
LTISELPPLRLGFLVSRRYE
ERQEQELLQELPWLQMRFQN
RANFEAMIDANMRPCGINPT
IIYRPYSFMAKISAVERGHF
LTVIPHFAWRLVNPATLKYF
DAPHRPMYMQEYLYSIRNHR
YTATIFSILLKIVTGQTINP
ASSRLQLNYGVSRRRG
>_0057.000943_ NP_840675.1 gi|30248605|ref|NP_840675.1| Uroporphyrinogen III synthase HEM4 [Nitrosomonas europaea ATCC 19718]
MDLSSNRLAGKSILITRPLH
QAGGLATWVRELGGEPWLFP
VLEISDSENKQPLLDLIARL
DEFDLAVFVSPNAVEKVIPL
VQVSHSWPRHVLVATVGKGS
ARVLERYGITNVIVPEEGSD
SEALLRMPQFQVMQGRHVVI
FRGNDGRRLLGDTLRERGAS
VEYIECYRRHKPEADPLPLL
KHWRDDGIQAVIISSSEGLD
NLFDMIGETGQQLLKATPVF
TAHERIERKARELGIRKIYR
TLLGDEGTVQGLLEYFEKM
>_0050.001908_ MFLA_01DEC03_CONTIG129_REVISED_GENE2121 mfla_01dec03_Contig129_revised_gene2121
MASTQELSNFLAQIERRAFK
QTAYAVRDDHAAMDIVQDAM
LKLAEKYAARPVEEYPMLFQ
RILQNTMKDYWRRQKVRNIW
TTLLSSLGVSPQDEEEHDPL
ETMASDHAYENPEMQYEQQE
TIAIIEAAIKNLPKRQREAF
ILRYWEDMDVAETAAVMGCS
EGSVKTHCSRAVHALAAALG
QYGFAKEMLDRAGDEQ
>_0117.002121_ YP_795076.1 gi|116333549|ref|YP_795076.1| Transcriptional regulator [Lactobacillus brevis ATCC 367]
MSQRAVSKRISALEAEIGAT
LFDRQKNKINLTAAGKHFLT
RATELLNTMRMTTYEVQQFT
QQAKEQFSVGYFSPFEGALL
RMALLDLPTTTNFLIEEAGI
EHLISDVLLKKIDCAVIIDN
PLFNAKIDQTNLDSVTLVTD
HMTLGLSPDLISDQTDSPAD
YLAKFPVIYYSSEESTYLEE
VFKSSIGQLADTFNARRVNS
YEQMQLLVGMGKAISFYPTE
LIKYMATPYDHIAYLSLDGV
TTAHSEFKLIYHHDNHQPLI
KQIQRYFDTHQF
>_0013.002061_ NP_880389.1 gi|33592745|ref|NP_880389.1| probable LysR-family transcriptional regulator [Bordetella pertussis]
MKLPTPVQIETICTVDRLRT
FTAAAAYLHTTQSAISARVR
EVEEMLGVILFKRNGRNVET
TLDGRRFVEATAPLQQRLAD
FMGTFLEPHAISGRIRLAVG
NSSMGRVSSMLSAIEKVLPN
ICFDLEVMYAAEILRDLEAG
RTDIGVFHTPSRLDSKLFIH
TSIGTEPTQWLMSGALRADF
ERRSPGFGLQTLLDHCQIWC
VPKPAFYFDQAIESIASHGG
KIRRLSTSGNMPATVDILLA
HGGIGLITDHLSQAHCQNGS
LVAAFDGISPPGFDYVLACA
RSRQSHLLGTVMEIATAAVH
AGAAAPALRPVPAR
>_0003.001688_ ARTH_26JUL04_CONTIG40_REVISED_GENE1693 arth_26jul04_Contig40_revised_gene1693
MRRPGRQVRLPVKKTLSDRS
VYGKDPCGPADDLRGAQTDW
SVYHRVMTTPAPAQQAVRTP
AGPAKEKILATAFRLFYAHG
LRAAGIDTIIAESGISKATF
YKYFPAKDELILAYLDKVDA
IWTGQLHAAAEAAGPDPAAQ
LAGLFDALASACRRDGYRGC
AFINAAAESASGTRVHDRTV
AHKKAVLAWMQGLAAEAGAA
RPDRLARSLSLILDGGLASG
VLDGDPEAAITAREAASQLI
TASLGNPE
>_0116.001254_ YP_194266.1 gi|58337681|ref|YP_194266.1| transcriptional regulator [Lactobacillus acidophilus NCFM]
MYNNELNTFLLVAKNGSFSG
AAKEMYVSKNAVMQQINLLE
SHLDLTLFNRTTHGVTLTNA
GRVFVEEAQKILELSEQIDQ
NLARYKNTIFVGSGFLNPPI
LIKKIWHQFLKINPKSRIDF
IEIADYENLSRNIDLFEGCY
AEKPFLRQGFSFCKCTTSKL
VAIMPPSDPLVKRNELRISD
LKERQVVIPDDSAYKSMHEI
EKFLQDKISNIKLEKYNSLT
TAVVNNAQIRDEILVVPDYL
GTLANPNLVKKVDWDLKIDY
GLYYRPDSSELCQKLIETIK
REFN
>_0091.000233_ SPUT_CN32_28JUL04_CONTIG113_REVISED_GENE234 sput_cn32_28jul04_Contig113_revised_gene234
MLGAMKTETQSTRQHILDIG
YKLIVRKGFSCVGLSLLLQE
AEVPKGSFYHYFKSKEQFGE
ALITDYFEKYQLDLDTLFNN
STLTGYERLMQYWQQWLHVQ
TDGCVDQKCLVVKLSAEVAD
LSEAMRLALLQGSAGIIDRL
TTCVQVGITDKSIAEQDPQS
TAEMLYHMWLGASLMNKLGH
SPAALERALVTTEAILTPKT
VP
>_0088.003732_ NP_719550.1 gi|24375507|ref|NP_719550.1| transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
MSKSLSRLDLNLLFTFQLLS
QERSVSKAAKKLNVTPSTVS
KSLAKLRDWFDDPLFIKTPQ
GLQLTPLAQSMEHDLADWLQ
MGKQLMGKRGDDMTKGLSFE
LMLESPLSLIMLNQLTQAIY
QHYPDAKVKVRNWDYDSLEA
IIRGEADIGFTGRESHPRSK
ESLDLLPYFIDFEVLFTDLP
QVYLRRNHPALQEEWSIDTF
LKYPHINILWEKSETWALDD
VLIELGLSRNIVLTLASFEQ
SLFVAAEPHHSMMAIAPQYC
EQYARQLHPDLVTRPIPISG
EYLNKLAIPFTLIWHKRNSH
NPKITWLRSKIKAIYQPRAR
D
>_0081.003627_ SDEN_20JUL04_CONTIG98_REVISED_GENE3629 sden_20jul04_Contig98_revised_gene3629
MWHLFLECAFKIFLFEHSFK
YFLNNFSKLGRLIIPSLKKT
QIMRNAEFDRKAVLCAAMSV
FTAKGYAKTSMQDLTKATGL
HPGSIYCAFENKKGLLIAAI
GQYQDERHQQFVRLFDNDAP
CLSNLSNYLTEIVDECLSQD
MSKACLLTKTLNEVGSQDEE
IKTLITANLTAWQAALTAVF
SLAQKNNEIDSQANSQELAQ
YLMMGIYGLRTFAHTHKDGQ
QLAQLAKKLLADVSR
>_0063.002619_ NP_249392.1 gi|15595898|ref|NP_249392.1| probable transcriptional regulator [Pseudomonas aeruginosa PA01]
MALSESAGQRPALLRPAQGR
DDRAYWHELFGSLEVVHFFL
VTARCGCFMQAARSLDVKPT
LLRKTLARLEERLGLHLFVH
EGNALSLTREGRIVQAAGQR
LVEDSQSHADLHRQQPLVRL
AVAESVLHDVLSRELWGYLR
KNANLRVALAELREGWPESA
GPAEIAIWIADPGQPHPAME
GHFAAPARIAELEYQPHIGK
RYSRERTRPASEDELDDYLL
AQLHGHAASAALAPWNRRVA
ARQSGVIEVQSHDLLLQAIL
WGACIGLLPHYAGRLERNLA
ALPQVFDEPMRREVWMSVQP
EAENRVEVRALLDLIEHAFD
DRRDWFGR
>_0061.000710_ NPUN_22DEC03_CONTIG1_REVISED_GENENPF1377 npun_22dec03_Contig1_revised_geneNpF1377
MDKKSSVSPLPTKALSDDKN
SPITVWHIGGEDIRLRIPLL
LKLREKGFNVGAVGSEDGNA
FADNQIPYFRYTLERGINPW
ADIYTRSQLSALFRQHQPDI
VHSFDTKPAMIAPIVAMKTG
IPGRVRTITGMGYVFSSTST
LALALRPIYRHLQRQAAIAT
GITIFQNPDDREYFCKHKMV
LDGRDDLVLGSGIDVEGLMK
NSAEPEKLAATRRELGLEGQ
LVVTMISRLVISKGVREYLQ
VASIVCQQMKNVTFLLIGSV
SSEGGQAIPIQEIHQQAGVV
RYLGPRNDIPTLLNLSDVFV
LPSYYREGVPRVLLEAATME
LPLITTDMPGCKEVVKDGWN
GLLVPPRDTKALATAILKLL
NSPEQRNLMGKRSRVHVQTN
FSLNQVADAYADIYNRVLKL
PKTLK
>_0030.001489_ DHAF_12NOV03_CONTIG1061_REVISED_GENE1691 dhaf_12nov03_Contig1061_revised_gene1691
VEKQSLRADDCEEKIIKQYS
DLVYRLAFARMGTRHDADEI
FQEVFLRFIKKKPVFHEEEH
RKAWFIRVTINCSKSFWSSS
WFKNVQPIDDDIAFETKEAM
DLYYELQKLPPKYRGVIYLF
YYEDMSIEEISKALNRKNST
VRTQLTRARAALKAVIKEDD
YV
>_0006.002473_ NP_887266.1 gi|33599706|ref|NP_887266.1| putative isochorismatase [Bordetella bronchiseptica RB50]
MKLINGVEVRDTLEELIAPA
HTALVVVDVQNDFCHPDGHF
ARHGKNIDTIAGMLPALVPF
VNAAQDMGIFTVFVQQLTLP
HGRSDSPAWLRLKCRDGKSP
EYTMVGSWGAQLVDGLQPRA
GDVMVQKFRPDAFVRTPLDG
ILRAQGIESLVIVGTTTEGC
VESTVRGASYHDYYVIPVTD
LITGPIAQLHANSLAFMRAR
YPAAESAQVLQTWRAARGAA
AA
>_0107.001678_ AFE_1726 AFE_1726 glycosyl transferase, group 1 family protein {Acidithiobacillus ferrooxidans ATCC 23270}
MTETGLKAEVLPTGVAVTSG
PHTPRVLFVNQACVLGGGEL
SLLDIARLLPFQIRVALFKD
GLLRERLKQAGVTVDVLDPT
GNGLSKIHKDSGWREAFGSL
TQLVRITWRLQGLAKNADVM
YANSQKAMVVSALVCITARK
PLIWHLRDILSAEHFSPTMR
RVAVTVANARASAVIVNSHA
TGEAFVAAGGRRKLVRVIHN
GIDPKPFDGITAHEAVLARA
ELRPLDNSFLIGVFGRLAPW
KGQHVVLEALCSLPGVCAVF
VGDALFGETDFVHVLHKRAE
REDLRERVRFLGFRNDIPRL
MRAVDVVVHSSVNPEPFGRV
IVEGMLARRPVVASAAGGVL
EIIEDGDTGLLYPPGDGLAL
RAQIERLRNDPALCERLGAS
GYKKAQEYFSIPAMIDGVNS
VITEVSSPRRRSV
>_0035.002091_ NP_815929.1 gi|29376775|ref|NP_815929.1| PTS system, IIB component [Enterococcus faecalis V583]
MQKPNVKMVRVDERLIHGQG
QLWIKSLGVNLVICANDKAA
EDSLQQTLMKTVVPKETNIR
FWTIERTAKVIWKAAPSQTI
FVVVGNLHDALELCKLGFPM
EQLNIGNIHADEGKEKISQF
IYLGKEDKQALCLMRDNYGV
TFNTKTSPLSNDGSQYLDVL
MEKISN
>_0109.003022_ RER070207003023 REr070207003023
MTIVKNQHQAEEITQNTFYK
AMTAKKAYAGKSSEQTWLCS
IARNLAMDECRKSTKFTELD
EEQLEQPDNMVKSLENKDTA
LQIHLILHELDEPYKEVFQL
RIFGELPFSQIGMIFGKTEN
WARVTYHRARLKIKERMDRN
E
>_0081.003176_ SDEN_20JUL04_CONTIG88_REVISED_GENE3177 sden_20jul04_Contig88_revised_gene3177
MISKEKAPLTVYAPASMGNV
GVGFDLLGAALAPIDGSLLG
DKVTISQASNSTASPASLHA
SGEIHFSQTGIWSHKLPTVP
EDNIVYQCAQFFLDKLGVKT
GIALNLEKNLPVGSGLGSSA
SSVVAALYGLNEYFDTPFEP
QVLLQLMGEFEGKISGSVHY
DNVAPSYLGGMQLMLDSPSE
LCAAIPHFKHWYWLVAYPGI
SLSTAKMRALLPAQYDKAVT
IDFGRHLSAFVHASHSQNPK
LAIEVLKDVLAEPYRADAIP
GYKQASGALNQLGMLTTGIS
GSGPTLFSITDDIGLAEKAK
AWLTDNYVTQDGGFVHICHI
DEQGARRV
>_0079.001981_ SBAL_17SEP04_CONTIG224_REVISED_GENE1988 sbal_17sep04_Contig224_revised_gene1988
MDKQQLWVLDGGMGRELARR
GAPFRQPEWSALALIEAPQT
VTEVHQAYVASGAKVITTNS
YALVPFHIGDERFAAEGEAL
AALAGKLARDVADEHANAVR
VAGSLPPLFGSYRADLFEAA
RVSELALPLIRALSPSVDLW
LAETMSLIAEPLAIKALLPE
DGKPFWVSFTLEDETLGSEP
TLRSGERVADAIDALVAVGV
DAILFNCCQPEVIEAALQVA
SDRLSALGRADIRLGAYANA
FPPQPKEATANDGLDEIRAD
LGPLDYLGWAERWRAAGASL
IGGCCGIGPEHIQALSTRLR
>_0062.000906_ OOEN_16SEP02_SCAFFOLD30_REVISED_GENE1229 ooen_16sep02_Scaffold30_revised_gene1229
MAKNTRDKIIETTISIIENK
GINFVNMRDLGAQIGLSRGA
VYRHFKNKDDLLVTIAIQSF
VKLSEHMSKTVRDNSKEQLI
NLLNYYYNFGTKHPSLYDLM
FQKKWTTSEYQNLHAIATQP
LEILRKFIPNTIDSATVLAF
IHGLIELTNSGHVEPEKGLD
DPQLLISTFITKIYE
>_0062.000769_ OOEN_16SEP02_SCAFFOLD2_REVISED_GENE642 ooen_16sep02_Scaffold2_revised_gene642
MKIVKFGGSSLSSGVQIRKV
FQIVKSDPERRIVVVSAPGK
RFKGDVKITDLLLKLAEAIL
NEEKTAQIYEQIFLRYQAIG
DFFKIPRSGIEQLKEHLYSV
AQADYPSNDFFRAALSAQGE
NMSAHLITLIFKQLGLKARL
LTPKEVGLTVSGEARKAQIL
PGSYAKIAKTKFTDNEVLIF
PGFFGITKNGLINTFSRGGS
DITGAILARGFGADLYENFT
DVDSIYAVNPGLVADPAPIK
EMTYNEMRELSYAGFAVFHD
EAILPAIQGKIPICVKNTNR
PEMPGTKIVPRDKVSHKNKI
TGIASSHHFQAIYLHRYLIN
REVGFTAKILKIMADLNISY
EHMPSGIDDLTIILDKNQLT
NGRKEKLTQRIKDEIQPDDL
QWRNDYAIIMVVGEGLVNRV
GAMADIVDPIRDAGISLTMV
NQGSSEISIMLGVRPEDEQK
AVKAIYNDHFENGHPKKELQ
IPRASFKSVSKSLIANFFV
>_0060.001399_ NMUL_10JAN05_CONTIG15_REVISED_GENE1400 nmul_10jan05_Contig15_revised_gene1400
MQQLLCMLVTGRIGLLHVHM
SSRASTWRKSLFLLMGMVFR
VPYLIHLHSPNFVDFFEHEC
GERRKRLIRFLLSRALYVIA
LSQGWAKDIKKISPAARTVI
LFNSVPLPAARLREKEMEES
SNALCDPPLILFLGHVGKRK
GTFDLIRAVALLSENFRLII
GGDGELQRAQMLSEELGVSD
KILFAGWLGKAEKDHLLARA
AIFVLPSYHEGVPMAILEAM
SWGIPIVTTPVGGIPEVVTE
GQEGLLVNSGDIVGLAHALA
RLLAAPSLRREFGERGRHKI
ESKFSIKVLQPQLEQLWIDS
GVSEPEPRPEPELVMQRGEV
PAPEIQPKV
>_0051.000870_ NP_248053.1 gi|15669248|ref|NP_248053.1| capsular polysaccharide biosynthsis protein M [Methanococcus jannaschii]
MSNKKKQLTVMGTVWDFWSV
LKMFDKLYESKYISFYEPWL
KGEIDKEKIILFNEKSKNPL
LWPFKILKRTYKILKIIREF
KPDLVITHHDDANVSIIPVI
LLNKIFKISNNTKFILWVRN
NPIESYKEGLYSKIIILAYK
YFYKYADIIIVQTQENKKII
ESHFKSLKNKTKIVPNVYEI
DKLQQLSNEPLEKQYRNIFK
DSFVFINIGRLTEQKGQWFL
IRSFKRVTEKYPNAKLIILG
DGELKNKLQELINKLNLQNN
VYLLGMQKNPFKFLKHSNCF
VFSSLWEGLPNTVIEALSLN
LPVISTDCKTGPREILCPEL
NISDKIDYPYYGKYGILTKP
FSREFIWQDLNEKPLIEEEK
MLADLMIKMIEDEDLRKRYS
NGLERAKDFDIEKIIKEWKL
LIEGTI
>_0049.002450_ NP_786344.1 gi|28379452|ref|NP_786344.1| transcription regulator [Lactobacillus plantarum WCFS1]
MDFNQLQTFLRVSEYGSFTK
AGEQSFISGTAVMKQINRLE
AELNLKLFVRTATGVQLTPQ
GKKFQPYVQQLLDLLNTAIE
ETRRVRSDDKQLILLGTSLL
HPADAFMSLWKELAPKMPKF
QIRLVQLQEDLNSRNREYAM
LGRSSDLIVGTFDSTTLKQS
FSAIQLGAYHFGIAVRSDNP
LAQLDEITYSDLAHRKVLMV
STGISEKNDLVRSEMLAAEP
SIQPIDTSGRYDINTFNETV
EENIAMISLTPWKRIHPNLV
TVPLKTSVTVPYGLLSTKFP
GKKTADFLHEFTKLVPTETQ
SHS
>_0024.001517_ CHUT_08NOV04_CONTIG199_REVISED_GENE2364 chut_08nov04_Contig199_revised_gene2364
LTLESKYHKKPEEIEEEQLW
IEKAKQNPQHFAVLYEKYYK
TIFLYLFRKVNDMDVAGDLC
SDVFSKALSAIQSYEYKGVP
YSAWLYRIAANEANMYFRKH
NKREMICIDDTSIHLLNEDL
QESNEENIYLTFLPLCLERL
KPDEVILVQWRFFENKAFKE
VGEIMNMTENNAKVKTYRIL
EKIRKWMLEMKGKSNE
>_0020.002795_ CAUR_25MAY01_CONTIG939_REVISED_GENE4193 caur_25may01_Contig939_revised_gene4193
MAIIRAINRVAPIPLPLRIV
EEFAVQIVINGSFWSQPTVG
IGQYLHHLLPWLHRLAPQHR
YLMVVPAGTKTPALPVGVEG
ITVKIGGPRQIAKVIFEQIA
IPVITQRLARNGEPTVIFVP
YFAPPLRARQPVVTTIGDLI
PLLLPAYRGSWAVRTYMALV
RRAALRSAHVLTFSTFSRST
ILNYLAIPSDRVTVSYLAAG
DQYRPAADVHAAQALVAARY
GVQPPFIYYVGGLDERKNLG
TLLRAFALVHGRHPHCTLAI
AGRALGRDPRLFPDIDQLIR
DLDLTKAVRRIDVPVDDGPL
LYQACTIFTYPSRYEGFGLP
PLEAMACGAPVIVSDASSLP
EVVGAAALRIAPDDVAGWAA
AINRLLSDEALRSDLRTRGL
AQAASFSYRHTATITLNVLE
QVAKAAPVVRHR
>_0009.003585_ NP_244492.1 gi|15616187|ref|NP_244492.1| late competence protein required for DNA uptake [Bacillus halodurans]
MKKTAEGDHCLDCKRWLPEM
QTIEKNRALFEYNPFLKNVL
TQLKFRGDVKLAEAFHPLLK
KLYQKEFKFDVIVPIPLSKD
RLIERGFNQVEALLAKWCTY
EDVLARKPGRKQSKKSRIER
IQQRTTPFMLKGEAEAVEGR
SIVLVDDVYTTGATIRQAAT
VLQAHGAARVRSMTIAR
>_0069.000630_ NP_895791.1 gi|33864231|ref|NP_895791.1| putative uroporphyrinogen III synthase [Prochlorococcus marinus str. MIT 9313]
MSSKPIAPLHGRTIIMTRAQ
EQQSEARSQLHALGSNVLDL
PALVIGPPDDWQPLDDALAD
IKTFHWLVFSSANGVRAVEE
RLQRIGQSLANRPKGLKLAA
VGRKTAQYLEHLGAAVDFVP
PNFVADSLINHFPVSGFGLK
MLLPRVQSGGRTILGEAFRE
SGAHVIEVAAYESRCPEAIP
DDTATALANSNVDAIAFSSG
KTAAHTASLLSHRFGSDWLQ
QLETVKVISIGPQTSLSCEQ
HFGRVDQEADPHNLEGLISA
CVKACRSEAETCPPGSR
>_0062.000677_ OOEN_16SEP02_SCAFFOLD26_REVISED_GENE976 ooen_16sep02_Scaffold26_revised_gene976
LMMQLTKEKNNYNFLFSSWV
KASSKNEIMLNENSNLADKV
AFIFKTFEIDKLEMMQMFAG
QDSDLKNKVINTYDDLIHYC
YQVAGTVGCMIFPILSKNNN
LSSIRNKVIDIGIAMQLTNI
LRDIHEDAIRNRVFIPDQLL
VLFKVNKEELKGRKTKRNLK
KLIAFLSKKALFFYESELEV
IQTVDSFSAKFSLKLAIATY
KKILEKIIDSDFEVLEGRIY
VTNLEKAKILDNIILKL
>_0105.000358_ YP_054863.1 gi|50841636|ref|YP_054863.1| putative glycosyl transferase [Propionibacterium acnes KPA171202]
MRILIVGAASSIHTVRWVNG
LVKRGHEVHLASVHPVGRHS
IDSRVRIHLAPHGGKAKYVV
NAGWLRSVAAGVQPDIVNVH
YATGYGLLARLAHIDAPTLL
SVWGSDVYDSPRANPLMRHM
VRSNLVSATRIASTSHCMAR
VTRDLVNKPISITPFGVDTE
ILTPPDRRRDANDGDGVVCI
GTIKALHSKYGIGELIRAFS
RVHDERPNTVLHIWGGGPDE
NPLKVLARRLVPDGSVEFRG
AIDHSEVRDALGSLDIFAAL
STLDSESFGVAIIEAGACGL
PAVVSDADGPAEVVEDGVTG
LIVPRGDVIASATALMQLVD
DVELRRRMGGAGRHHVVETY
SWERSLDLMELAYRDTIDDA
ARQHCSGRHGG
>_0083.002215_ NP_837031.1 gi|30062860|ref|NP_837031.1| hypothetical protein S1430 [Shigella flexneri 2a str. 2457T]
MGVKMSLELPWPNDERLQQL
CENLLNNQGYLPTLDNLADK
INVSSRTLMRLFVKETGLTF
RHWVQQMHVISAVTLLDDGY
SLTKIAHRLGYASAESFGNM
FKRRTGYSPGKFTRRLTMHN
YAITRQMI
>_0074.002095_ RRUB_10JAN05_CONTIG98_REVISED_GENE2885 rrub_10jan05_Contig98_revised_gene2885
MSDAPQPAWKTAFCSFYYQD
APPPDDPLLEAGKLALLVID
MQNVYVSRPDRASLDDAGKR
AYDAWTPFHQRMGETVIPTI
ARLQAAFRAGGHPVLFARIA
CQTTDGRDRSLSQKLPGWNN
LLLPKDAPASQILAELSPLG
DEIVVTKTTDSALTGTNLRL
ILTNLGVTQVVCCGIFTDQC
VSSTVRSLADESVSVIVVED
GCAAATDALHRQELAIINRI
YCAVMTADDVLGYLP
>_0062.001145_ OOEN_16SEP02_SCAFFOLD3_REVISED_GENE1178 ooen_16sep02_Scaffold3_revised_gene1178
MMAVLPKNHHLANLRKISIS
QLEKEFFLLEPKGSRPYNLC
VNLCKSSGFLPNVVYTDRQI
ENIVDLVADGMGISLLMSKL
VPKESSRIVAIPVEPTVSTS
ISLCYMSDENLTDLKRKFIA
YIKNR
>_0053.004173_ MMAG_12JAN01_CONTIG3880_REVISED_GENE4195 mmag_12jan01_Contig3880_revised_gene4195
LRILHTIPGRNWGGMEHRTL
EQVRWLKSHGHDVWLASPQD
GESYKRAQAAGMPVVDFDFD
RPWKPATVRSFRKLLIEKSV
EVVDTHVTRDAKTACACLDL
VAVVRSRHVNQPLKGGAIRR
LQWRMGADHIITVAECTRSQ
LLGVGLADAKRSVSIGGWAD
ERFFDLPDPVATRARLRAEL
NIPAEAYAWVCVGMIRPDKG
QDHLLAALALLKARGLSPML
TIVGSATSECADYERGLHAQ
LSAAGLAGQVVFTGYREDVS
ELMQMGDAVVIPSLTEAQPR
VAVQAFAVGKPVVASAVGGV
PEIVFDGETGLLVPAADPAR
LAEAMARIMTDHDATARMAA
NARQMAEKDMRFDNRMNQTL
EVYRTAQAHARKRFLPKFRG
VGA
>_0035.001743_ NP_815513.1 gi|29376359|ref|NP_815513.1| transcriptional regulator, LysR family, putative [Enterococcus faecalis V583]
MTIEKLEYFYTIAKYNSISK
AASELHVSKSTLSASLKDLE
SELGHLLFNRNGNSLTLNSY
GDKIVQSVYIILNEAKKMKL
NLHEMIENPVMRLGFGNTSL
MYKVTENEDQLNRFWECYHG
SSFELLNKLENHELDFVITS
ADVNSPVLKKEQLIELKMYL
CVSREIKQEIEEEGFSCLTN
YPFLFLPHHLDHLEATKSVL
EMLQLTSPLVCCYDTLMLTR
LIEKSKGVYAVISLRKEQLQ
EIDSKLFFLPIERKQKFYLY
RNVSSSVFVQPGQIKATLQK
LLET
>_0016.000804_ YP_438494.1 gi|83717366|ref|YP_438494.1| transcriptional regulator, TetR family, putative [Burkholderia thailandensis E264]
MSAIPQATRKRGRPVKGESA
TLRDELILKSAKLFRTQGYE
RTTVRDIAAAAGVQAGSWFY
YFKTKQDILVAVMEQGMSNA
LARIEALDVENLPARDAFRA
LVRTHLQTLVSPDHDFIPVL
LYEWKSLDEAMRSKVLKLKD
RYEAVWDGVIERLQAAGDWP
APTPIDRLLTFGALNWVAQW
YKPDGALGLDALAEHAVRFL
LRTGAMPAQAPAAASAAKRR
RAAKAG
>_0120.002810_ YP_001303579.1 gi|150008836|ref|YP_001303579.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503]
MGMSFSTAEEKKQVRWFVMR
AYKNEKMAEDRLKDKEYGLE
YFIPKHYAVRTYHGVKSTRL
VPVIPSLVFVHASHSQITEF
KKRYNFLQFAMWEKSTGMEY
ITVPDDQMDSFIQIASLHEK
DTAYYKPDEIDVRKGTRVCI
HGGKLDGVKGVFMRVKGKRN
RRVVVMLEGIMGISAEVHPD
LIEVIS
>_0088.003584_ NP_719260.1 gi|24375217|ref|NP_719260.1| hypothetical protein SO3720 [Shewanella oneidensis MR-1]
MVIADIKAVPAMESFDKIII
GASIRHGKHNPALYEFIQKH
QQILTQKVSGFFSVSLVARK
PEKNTPETNPYMQAFLSKTT
WRPKLLQVFGGNLNYQGYNA
FDRNIIRFIMWLTKGPTDPV
TNVEYTDWQKVQEFGLQIHQ
A
>_0085.000952_ SHEW_20DEC04_CONTIG133_REVISED_GENE953 shew_20dec04_Contig133_revised_gene953
MSLKMKLIYVVESSVPYGAN
KCLIEIIDRLDKDKHEVMVV
GADEGALSSWLRERNVSYVS
LNHRLSIYPVLNSRKDYLLW
LPRLFRRVALNVIAMVKFFK
ICKRFKPDIVHTNVGPCSLG
YFVATYLGIKHVWHVREYQD
LDFGMSFFPNRKAFLKRLKR
SDAVICITNSIAAHFHLTDN
ENLAVINDGVISDEKEIDII
QKENYFLFAGRLEAAKGIEE
AIESFFEFCETDSSGISFYV
AGDGNFNYLKKLKEKVSKSN
FSNRVRFLGFRDDIFALMRM
AKALVVASRCEGFGLITAEA
MYQGTLVIGRDTGGTSEILK
DSKGIHYGFLFNSIDELTKL
MHEVVDLSPDEYTKMARSAQ
RRTLDKYTINRNFREISDVY
NTLM
>_0076.002035_ SAMA_14OCT04_CONTIG76_REVISED_GENE2038 sama_14oct04_Contig76_revised_gene2038
VGTGRGHVVWAARNLYPVGA
FYPHFLENLMTHTLILYSTV
DGQTRKICERIKARCEAAGE
QVTMADIAEADALLETADKV
LVGASIRYGKHRPALFEFAT
RYGAVLGTKINGFFTVNVVA
RKPEKNTPATNPYMQKFLQL
SQWQPQQLGVFAGKIDYPRY
GLFDRTMIRFIMWITKGPTD
IKGTFEFTDWDKVDGFADTF
AARKAP
>_0074.003356_ RRUB_10JAN05_CONTIG98_REVISED_GENE62 rrub_10jan05_Contig98_revised_gene62
MAAPDTPPDSPPPISAVEMP
SGKDAGTENFPVGSVLLPAR
LRPHVARFYAFARAIDDIAD
SPDLDAAAKIDRLQGFEEAI
TGRDTTDPAYAKGHALRVSL
EATGVPAIHGVELIAAFKQD
AVKGRYATWAEMMDYCRLSA
APVGRYLIDLHGGSRAGYAS
SDALCVALQVINHLQDCQDD
FRVLDRVYLPADWLAAEGAS
VSDLDRAACTPGLRRVLDRC
LEGTRRLLDAARPLPGDIID
RRLGLEAAVIVSIAQTLTGR
LARQDPLAQRVKLGKAATAF
CAARACAAYLMVPGAYR
>_0011.004506_ YP_105134.1 gi|53716446|ref|YP_105134.1| iron-sulfur cluster-binding protein, rieske family [Burkholderia mallei ATCC 23344]
MSNLSDALQLKSAHSQLPVT
AYFDEALLAREIETLFKKGP
RYVGHELMVPEAGDYFALPS
EDEGRVLVRNQASQIELLSN
VCRHRQAIMLNGRGRTQNIV
CPLHRWTYDLEGQLLGAPHF
PDKPCLNLHATPLQHWQGLL
FEAEGRDVAHDLAQLGTKHH
FDFSDYLFDHVEIHECNYNW
KTFIEVYLEDYHVVPFHPGL
GSFVSCDDLKWEFGDWYSVQ
TVGVHNALAKPGSPTYQKWH
DQVLRYRNGVPPEFGAIWMV
YYPGLMIEWYPHVLVVSWLI
PRGPQKTTNIVEFYYPEEIA
LFEREFVEAERAAYMETAIE
DDEIAWRMDAGRRALMERGE
SQVGPYQSPMEDGMQHFHEF
LRRQLGAI
>_0107.002228_ AFE_2288 AFE_2288 GTP cyclohydrolase I family protein {Acidithiobacillus ferrooxidans ATCC 23270}
MPSQPSRELERFSNPHPERD
YVVHMDLPEFTCLCPLTGQP
DFAHFMLDFIPDQHNVELKS
LKLYLWSFRDEGAFHEAMTN
RIADDLIGLINPRYLRLLGR
WYVRGGITTDVLIEHRQPGW
QNPDILGQLPTVRWAQHQPG
H
>_0104.002382_ NP_636884.1 gi|21230967|ref|NP_636884.1| 5-methyltetrahydrofolate-homocysteine methyl transferase [Xanthomonas campestris pv. campestris str. ATCC 33913]
MTHLPIPSAESSIPFSLPWL
HPERAAKLTAALRERILIID
GAMGTMIQRHDLQESDYRGT
RFAEGYDSAQGHVHGAGCDH
APQGHDLKGNNDLLLLSSPE
IIAGIHRAYLDAGADLLETN
TFNATSVSQADYHLEHLVYE
LNKAGAQVARACCDAVEELT
PQKPRFVIGVLGPTSRTASI
SPDVNDPGYRNTSFDALRET
YREAIDGLIDGGADTLMVET
IFDTLNAKAALYAIEEVFEA
RGGRLPVMISGTITDASGRT
LSGQTAEAFYASVAHGKPLS
VGLNCALGAKELRPHVETLS
QIADAYVSAHPNAGLPNAFG
EYDETPAEMAETLREFAKSG
LLNLVGGCCGTTPDHIRAIA
EAVADLPPRQLPNALEQAA
>_0093.002836_ NP_342328.1 gi|15897723|ref|NP_342328.1| Hypothetical protein [Sulfolobus solfataricus]
MFFARLIPLKGVLELPFIVK
EVITMSGYKELKIVVMGKFP
DDNLKAIFFEIVKRLQLEDN
IIYKGYLTSREELFNMVSEA
RCMIYPTHEDSFSLAILESI
TVGTPVVAYDIPGPKSVYSG
LSAVKFVEEYNIKLMATEVT
KILTMNDDEYNSLIFNDKMD
KFIEKHTDWDLVVERYYRDL
MSLF
>_0076.003088_ SAMA_14OCT04_CONTIG96_REVISED_GENE3092 sama_14oct04_Contig96_revised_gene3092
LSGHDKVQTPKRNRSEIKRE
AIMLAAKELFQTQGVQGTSM
DELARVAEVSKRTVYNHFAS
KEALVLELVAELWQSANADI
KVCFVKDHPVHPQLLEVLNA
EIAIMTNPDYLELVRVAIGH
FMFHPGALKCELESRVTHES
ALRRWLSEGIKSGALPNLDV
DEVECTLHGMIKGVCFWPSL
MQLCEPLPKGELERLGADIA
AFFEFKYLSGRN
>_0061.003750_ NPUN_22DEC03_CONTIG1_REVISED_GENENPR1064 npun_22dec03_Contig1_revised_geneNpR1064
MKLCIVTHKIKKGDGQGRVN
YEVANEAIRRGHQLTLLASE
VAPELEANSQVNWIPIPVKD
YPTEFVRNFVFAQKSTDWLR
KHRSEIDLVKVNGAINLAAA
DVNAVHFVHSSWLRSPVHIS
RNRRDFYGFYQWLFTAFNAR
WEKQAFQKAQVVVAVSEKVA
HELVNIGVPRSRIRVIVNGV
DLDEFTPGESDRQKLGLPEN
VTLALFAGDIRTPRKNLDTV
LHALVKVPDLHLVVVGHTQN
SPFPQLAASLGLSKRVHFVG
FRRDIPQIMQAVDLFVFPSR
YEACSLVLLEALSSGLPVIT
ATATGGGELVTPECGIVLSN
SDDSDALALALLTLVSSPTL
IKQMGKAARSVAEQHSWTTM
AQTYVDLFEELSKNAEHRSD
TNLSPSTRPITLPFSATEAN
>_0055.001807_ RGEL_26JUN05_CONTIG562_REVISED_GENEMPEA1177 rgel_26jun05_Contig562_revised_geneMpeA1177
MSIKSDKWIRRMAEQHGMIE
PFEPGQVRNAPDGHRIVSYG
TSSYGYDIRCAPEFKVFTNI
YSTVVDPKAFDEKSFVDIDA
EVCIIPPNSFALARTVEYFR
IPRNVLTICLGKSTYARCGI
>_0043.002625_ JANN_22DEC04_CONTIG27_REVISED_GENE2626 jann_22dec04_Contig27_revised_gene2626
VDVDFRKNGDPAHLDVLVPN
FKKRLSGVTSTIVRLVPLQA
QEMALAAVSPDLPAHVPQIR
LSQLLTMPRSGPHGARVWHA
RRNTEMLGGLALKYLLRKRL
KLVFTSASQRRHTGYTKWLI
GQMDHIIATSQKTASYLERP
ADVILHGIDVDSFTPATDKA
ALRARLGLPDATLIGCYGRI
RAQKGTGDFVDAMIPLLRAN
EGVHGLIMGRATEKYVEYER
GLHAKIAEAGLTDRLHILPE
VPVHDMADWYRVLDLFVAPQ
RWEGFGLTPLEAMACGVPCV
ATTVGAFPELITDQVGMLVS
PQDTPAMIRAITHYTDDAHM
RLGQGAAARAHVEQNFRIER
EAEAIMAIYRRLLATGQARR
>_0038.001636_ NP_444240.1 gi|16554516|ref|NP_444240.1| Aspartokinase II alpha subunit [Halobacterium sp. NRC-1]
MRVVTKFGGTSLGSGDRVER
AADSIADAVAAGHEIAVVAS
AMGNTTDELLDDITFDADEP
DRAEIVSMGERTSVRMLKAA
LAARGVDATFLEPGTTDWPI
VTNERGEVDADATAAGVDRL
AGRLGDTVPVITGFLAEDPQ
GNVTTLGRGGSDTTAVMLGR
YLDADEVVIVTDVEGIMTGD
PQVVEGARNVGRITVDELRN
LSFRGAEVIAPSALSFKDDA
LDVRVIHYQHGDLLSGGTRI
EGTFESMIDMRDSPLACLTV
AGRAIRNRPGITSALSTALS
DSDINVDAVASGMDSMTFYV
DESVAERAENILHQEVIAVS
ELSSVTVTDDIAAIRVLGGE
LPNRPGVLCRIIDPLADRNI
NVIDIISSATSVAVFVSWAD
REPALDVVQNGFGS
>_0013.001363_ NP_882213.1 gi|33594569|ref|NP_882213.1| TetR-family transcriptional regulator [Bordetella pertussis]
MHPVRTTLPADAVLLTPELE
NWVGIDYDDMPAVQRKLLDA
AAKAFTTYGFAATSIDVIAS
QIGATKGSVYYHYRSKTDLF
FAVHKCAMVMNLKAQVPVAF
DASLDPRAKLYRMAYLHAML
MMDSLYYQRVTVQGVELHQS
VSTTPMEREALAEVIAMRDV
YEGLFSQVVRDGMASGHFAE
ADHSIAAKGILGILNWITVW
YRPRETESPGFRQRVATQLA
TQATQAIQGIARADTRG
>_0109.000793_ RER070207000794 REr070207000794
MLRPLFNLLYTDALACGNEA
GLWLFGNRKFKVLKNGRNVK
KYSFSLEKRNEMRKRLDISD
CIAIGHVGGFFEQKNHKFLI
KIFREVLNRKPNAKLFLIGD
GPLKDEIMKNVSDIRKSVIF
VGTVDNVNDYMQAMDIMVLP
SLFEGLPLVAIEWQINGLPS
LLSNTITEDCNITNMVRFES
LEEAPYIWTNDILEMLEKEN
RLENSQKAISLVRKNGFDIY
DNAKILEKIYKS
>_0084.000956_ SFRI_16AUG04_CONTIG69_REVISED_GENE958 sfri_16aug04_Contig69_revised_gene958
MTAEQLVAQYSKSTASRDDS
VKTDLTFIGPTVNGQEEVFN
SGAVAFLDSLCAKFVDEVPE
LLAKRKQKQARIDNGELPDF
LPETRAIRDGNWTIRGMPED
LTDRRVEITGPVDRKMIINA
LNANVKVFMADFEDSLAPSW
QKIVEGQINLRDAVRGDIEL
TVPETGKHYSLNPDPAVLIA
RVRGLHLIEKHIEYKGKPIP
GGLVDFAMYFYHNYRQLLAK
KSGPYFYIPKLESHIEARWW
AKMFAFVEERFCLQPGTIKC
TCLIETLPAVFEMEEILYEL
RSNIVALNCGRWDYIFSYIK
TLKNYPDRVLPDRQAVTMDT
KFLSAYSRLLIKTCHKRGAL
AMGGMAAFIPAKDEATNELV
LQKVRGDKELEARNGHDGTW
VAHPGLADTAMKIFNDYIGG
DRTNQLHITRDVDAPILASE
LLEPCQGERTEAGMRLNIRI
ALQYIEAWIQGNGCVPIYGL
MEDAATAEISRTSIWQWIQH
GKSLSNGKLVTKALFKDMLK
EETANVKKELGAERFNAGEF
AKAAELFEQITTSDELVDFL
TLPGYELLTA
>_0079.002232_ SBAL_17SEP04_CONTIG229_REVISED_GENE2239 sbal_17sep04_Contig229_revised_gene2239
MSRFVKRIWPPSAWRIVCLG
YQLSTRWLAGSLPNRCLLCH
QSIPIPETGICIVCLQSGLY
HGPICLGCGKSMQIEVDYCG
ECQKRQPRKVVAPCSYHQGL
GAWIGAIKYQGQLAALPVLC
RALVARIKLLEQQGLIMLPQ
AIVPVPLHPKRLQQRGFNQA
WLIAHELSQLLQLPLVSEGL
TRQQDTRPQAGLSGAQRRRN
LHDAFMLADDFAFQRIALVD
DVVTTGTTVSEIARLFEARY
VHVQVWCLARAEAPGLLDDL
DNE
>_0062.001561_ OOEN_16SEP02_SCAFFOLD6_REVISED_GENE1882 ooen_16sep02_Scaffold6_revised_gene1882
MKYLLLVSHGDFSKGLKSSL
AMFASASMSSVIAVGLKPDE
SADTFGERFQKLLKTIPKDS
QFIVLADIIGGSPLTTVCNV
LSSHGKLDCKLIPYRYLLKF
>_0034.004179_ NP_414880.1 gi|16128331|ref|NP_414880.1| transcriptional regulator for mhp operon [Escherichia coli K12]
MIFYCALSIGRVFSATIKTC
PNVHQVHHVVLTIEMSINMQ
NNEQTEYKTVRGLTRGLMLL
NMLNKLDGGASVGLLAELSG
LHRTTVRRLLETLQEEGYVR
RSPSDDSFRLTIKVRQLSEG
FRDEQWISALAAPLLGDLLR
EVVWPTDVSTLDVDAMVVRE
TTHRFSRLSFHRAMVGRRLP
LLKTASGLTWLAFCPEQDRK
ELIEMLASRPGDDYQLAREP
LKLEAILARARKEGYGQNYR
GWDQEEKIASIAVPLRSEQR
VIGCLNLVYMASAMTIEQAA
EKHLPALQRVAKQIEEGVES
QAILVAGRRSGMHLR
>_0034.000900_ NP_414671.1 gi|16128122|ref|NP_414671.1| putative PTS enzyme II B component [Escherichia coli K12]
MLGWVITCHDDRAQEILDAL
EKKHGALLQCRAVNFWRGLS
SNMLSRMMCDALHEADSGEG
VIFLTDIAGAPPYRVASLLS
HKHSRCEVISGVTLPLIEQM
MACRETMTSSEFRERIVELG
APEVSSLWHQQQKNPPFVLK
HNLYEY
>_0025.001200_ NP_282850.1 gi|15793027|ref|NP_282850.1| hypothetical protein Cj1724c [Campylobacter jejuni]
MRYGEKEIKEFDVENMEIWP
NDAKNDYIIKITLPEFMCCC
PRSGYPDFATIYLEYMPDKF
VVELKAIKLYINTFMYRNVS
HEASINEIYNTLKDKLKPKW
IKVVGDFNPRGNVHTVIECR
SDMVVPK
>_0018.000789_ BFUN_06OCT04_CONTIG480_REVISED_GENE448 bfun_06oct04_Contig480_revised_gene448
MSFDLETAANPKGLRRVAID
PVSRVEGHGKVTILLDEQQR
VQQVRLHIVEFRGFEKFIEG
RPYWEVPVMVQRLCGICPVS
HQLAASKAMDRVVGARPVTR
SAEKIRRLMHYGQVMQSHAL
HFFYLASPDLLFGFDSEVDL
RNIVGVAQAYPDIAKQGILL
RKFGQELIRATSGKRIHGTG
SIPGGMNRYVSQADRDMLYR
DVDQMTGWAADAVDIAKQLH
AQNPALYDSFGSFRSNMLSL
VRADGAMDLYDGVLRARDAD
GGIIFDGASDQDYMSLIEEE
TRPWTYMKFPHLRSLGRDTG
WYRVGPLARVQNCDFIPSPL
AEAQRKEFVDWGKGSPVHAT
LAYHWARMIEVLHAVEVIKD
LLDDPDILQGELMASGERRA
GGVGIIEAPRGTLIHDYRVN
ADDLVTHCNLIVSTTHNNQA
MNEAVRSVAREYLDGQRLTE
GLLNRIEIAIRAFDPCLSCA
THALGRMPLDVVLLGPGGEP
FDHMTKSHDGEVMRHSPAGM
GAMA
>_0011.002150_ YP_103966.1 gi|53725750|ref|YP_103966.1| glycolate oxidase, subunit GlcE [Burkholderia mallei ATCC 23344]
MEEDDIVAGWAARIRDAAAS
GRALRIRGGGTKDWYGQALD
GEILDTRAHHGIVSYDPAEL
VVTARAGTSLAELEATLAER
GQMLPFEPPHFGRGATLGGA
VAAGLAGPRRATTGAPRDFV
LGVAILNGRGDRLRFGGQVV
KNVAGYDVSRLMAGSLGTLG
LMLELSVKVLPVPAAELTLK
FDMSATDAVRKLNEWAGRPF
PLSASAWRYGTLVLRLSGAE
AAVKSAKTVLGGEAVDAVEA
ERFWEGVREQNDPFFSSLAP
GHALWRLSLPSITEPMHLPG
TQMMEWGGAQRWWITDADAQ
TVRMSAKQAGGHATLFRASE
SYDRSAGVFTPLPAPLMKIH
RGLKTAFDPARIFNRGRLYP
DL
>_0005.004289_ YP_323176.1 gi|75908880|ref|YP_323176.1| Deoxycytidine triphosphate deaminase [Anabaena variabilis ATCC 29413]
MIKNDIWITEMAQKGMIAPF
ESSLIRKIPKDNLVAAQPVI
SYGLSSYGYDIRLSSAEFRI
FRHIPGTVVDPKNFNPQNLE
PTPLHTDKDGSYFILPAHSY
GLGVALEKLEVPNNITVICI
GKSTYARCGIIANLTPAEAA
WRGHLTLEFSNSSSADCRIY
ADEGVVQLLFLEGEPCAISY
ETRQGKYQDQLEKVTLAKV
>_0004.002498_ 17741041 gi|17741041|gb|AAL43530.1| transcriptional regulator, TetR family [Agrobacterium tumefaciens str. C58 (Dupont)] (gb|AE008688|:2520075-2520734, Atu2549
MNKTIDQVRKGDRKSDLPVR
RRPRRSAEETRRDILAKAEE
LFRERGFNAVAIADIASALN
MSPANVFKHFSSKNALVDAI
GFGQIGVFERQICPLDKSHA
PLDRLRHLARNLMEQHHQDL
NKNPYVFEMILMTAKQDMKC
GDYYKSVIAKLLAEIIRDGV
EAGLYIATDIPVLAETVLHA
LTSVIHPVLIAQEDIGNLAT
RCDQLVDLIDAGLRNPLAK
>_0000.000755_ ADEH_23AUG04_CONTIG59_REVISED_GENE757 adeh_23aug04_Contig59_revised_gene757
VTEHAQHAVDRVEKAIAYLR
AGKMVILTDDEDRENEGDLC
LAAEKVTPAAVNFMARYGRG
LVCLSLTEEKVRQLRLPLMV
DETANTSGFGTAFTVSIEAR
QGVSTGISAKDRAHTILTAV
ADGCRPEDLARPGHVFPLRA
RKGGVLVRAGQTEGSVDLAR
LAGLKPAGVICEVMNDDGTM
ARMPELEKLSRAHDLPIVSV
ADLISYRMMKDTLVRRAAEA
PLPTEHGEYRAVAYENDVDR
HQHVALVKGKWRSNEAVLVR
VHSKCLTGDVFGSERCDCGP
QLHAALDQIDRAGKGVLLYL
DQEGRGIGLANKLKAYNLQD
EGYDTAEANVRLGFKPDLRD
YGIGAQILRDLGVRKMRLLT
NNPKKIIGLEGYGLEVVERV
PIEMPATRRNRAYLITKRDK
MGHLLTLAPVAAAVARAPAA
PARAAKRRRPAPSRKGKGRR
>_0088.001510_ NP_719406.1 gi|24375363|ref|NP_719406.1| transcriptional regulator, LysR family [Shewanella oneidensis MR-1]
MIINNNIKELSIAHLQLIVC
LIKHGNSCVVSDELGISQSS
ISYHLRRLRVIFADEMFIRT
GKGLKPTERCIQIGHFAQDL
INRVEEELIHANDFVPKQMK
RELTLIAADTACGWFSTLFS
DMQKTLPRVTLCARPWNLKS
MEDLDSGAVDFGIHIIENSK
KGIYDMDIAPCYRLCVVRDG
HPLISKGEVTLKDLEQYPVL
INDLGGWNNDGNSLMQRVLE
KHGLKLNIAGRLGYINSIFT
ALHTSNAITYTSAASIPQSI
PGLTLLRGPKEVNEVDCFYR
LYISRMRYGSQETNYLIDFI
YDSFKHFLTQQYNRIDIAAV
INK
>_0077.002641_ NP_371252.1 gi|15923718|ref|NP_371252.1| similar to GTP cyclohydrolase I [Staphylococcus aureus subsp. aureus Mu50]
MAHGRQQDELQDITLLGNQD
NTYNFDYRPDVLESFDNKHQ
GRDYFVKFNCPEFTSLCPIT
GQPDFATIYISYIPNVKMVE
SKSLKLYLFSFRNHGDFHED
CMNIIMNDLIELMDPHYIEV
WGKFTPRGGISIDPYTNYGR
PNSKYEKMAEHRLMNHDLYP
EKIDNR
>_0073.006373_ YP_298412.1 gi|73538045|ref|YP_298412.1| regulatory protein, IclR [Ralstonia eutropha JMP134]
MTTQAAPNDDKAADGGKPQR
GIQSLDSTGQLLAALVAAGR
PLPLRDLAQAAGMAPAKAFP
HLVSLQKTGLLARDAAGNFL
CGPLSLELGLIALQRLSPTR
EAEPEIIELAEATGLSVAMA
VLGPLGPTVVRLEESARPQH
VSLRVGTVLSLVNTAIGRTM
AAYLPENVLAGLLERDDLRM
AGVRRADVLLDGGGLVPDYA
DRLAHVRAGQVDNALSRPVP
GIDTLAAPVFDHTGSLALVV
AVMGSTGSFDSSTQGATADL
VRHAAHRLSWRFGAVQTPR
>_0030.000170_ DHAF_12NOV03_CONTIG1010_REVISED_GENE203 dhaf_12nov03_Contig1010_revised_gene203
MDTIDEKDRAYIFSIAKNTA
IDIGRKRSRQDSSLDEIENL
VGDEAVSIEDDIINREMFDI
LQKKIDELPNAYGDIILLKY
IYGLPDQELAEMLGISLENT
RMRLSRARRKLKEMLTEGKE
APDHE
>_0116.001179_ YP_194174.1 gi|58337589|ref|YP_194174.1| putative pyrophosphokinase [Lactobacillus acidophilus NCFM]
MKAYALVGGPTDLWLHDIKK
QLTEAKQNNDLIFGVDRGAL
FLEELGIIPDVAIGDFDSLQ
AKDLSRIEKTVKDIRYSNPI
KDWTDSEIMVQTVFKDYLAD
KLIILGASGGRIDHFLINLL
MWLNPPINQFAQRVEIIDNH
NSIVFFNPGVHIIKKKPDYP
YIGFATLSETEDFNISGARY
DLNDYSSTYPRVFSSNEFLP
NSDYFEISLKKGMIAAIYSK
DINRFHNL
>_0104.001832_ NP_635814.1 gi|21229897|ref|NP_635814.1| transcriptional regulator tetR/acrR family [Xanthomonas campestris pv. campestris str. ATCC 33913]
MRMNKASSYPVSGRGPADHD
VRDQIVNAATEHFRRYGYEK
TAVSDLAKSIGFSKAYIYKF
FESKQAIGEMICTNCLRQIE
DEVRAAVDETDSPPEKFRRM
FKVIVDASLRLFFEDRKLYE
IAASAATERWQSVLAYEERV
LALLQEILQQGRQGGDFERK
TPLDEATRALYVLIRPYTNP
VLMQHSLDVIDEVPGLLSGL
VLRSLSP
>_0095.004261_ NP_459569.1 gi|16763954|ref|NP_459569.1| putative transport protein, PTS system [Salmonella typhimurium LT2]
MRHVYVASHGPFARGLINSL
SLLIGDEHGVTPVCAYDGDI
VTTEQLEQTLENLIAQANGE
EVVVFTDLLGGSINNSAAKV
LMRHRHVFVVAGVNMTLLLE
FLLCEEESTDAAITYATNAA
RESIVFINTLITQPSADLQG
ESHDQISAH
>_0078.001791_ NP_825698.1 gi|29831064|ref|NP_825698.1| hypothetical protein SAV4521 [Streptomyces avermitilis MA-4680]
MSNDEITLTAGDAEVALVPG
SGGRVRSLRVGGVELLRQGE
RYGCFPMVPWCGRIRDGKFR
NGATLHQMPLNSPPHAIHGT
ARDGAWRVARTGKNEAVLTY
DLVEPWPYPGRVTQIAALTE
DSLTLTMSVEAYDSSFPAQI
GWHPWFNRNLGQDDARVDFT
PAWQEERGADHLPTGNRVAP
LPGPWDDCFGMPDGVHVTLS
WPGQLELTVASREEWVVVYD
EQPEAVCVEPQTGPPDGLNT
RPRLVTPIEPLEATTTWTWR
TL
>_0076.002207_ SAMA_14OCT04_CONTIG82_REVISED_GENE2210 sama_14oct04_Contig82_revised_gene2210
MKLETIDYRSPDAAAQFVQS
LRDTGFGVLSNHPIQQSLVE
AIYKDWYEFFQSGAKEEFRF
NPETQDGFFPADVSETAKGH
SVKDIKEYYHVYPWGRIPES
LRANILAYYDHANQLAAELL
SWVEAHSPDEVKALFTEPLP
NMIDGSHKTLLRVLHYPPMK
GDEEPGAIRAAAHEDINLLT
VLPAANEPGLQVKAKDGTWL
DVPSDFGNIIINIGDMLQEA
SGGYFPSTSHRVINPEGMDK
TKSRISLPLFLHPRPDVVLS
ERYTADSYLMERLRELGVI
>_0066.000372_ NP_904499.1 gi|34540020|ref|NP_904499.1| competence protein F-related protein [Porphyromonas gingivalis W83]
MRKTANGTGRHIRLLIRKVL
DLFFPRYCPVCDSLLAETEI
GVCPRCMVRMPRYIEGMQYG
LDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEI
GEMLGRMAGRSYPFLSKDYD
LIVPVPLHPRKQRKRGYNQA
LLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAM
KGKFALSPNTRVAGIRVLLV
DDVLTTGATVQAAAEPLAEA
FAAKIGVLVAAVTKRPSNWS
HYSDER
>_0056.003317_ SARO_25NOV03_CONTIG30_REVISED_GENE3523 saro_25nov03_Contig30_revised_gene3523
MPGRPCRPTHRWKRRNSAFA
RQTVRLSHDPMTDESRIWTA
ALVVVGDEILSGRTQDKNIA
QVATWLGVQGIRLREVRVVP
DDMDAIVEAVNTLRARNDYL
FTTGGIGPTHDDITVDAVAS
ALGVEVVIHPKARAILDSYY
ASRGGLNEARLRMARVPDGA
DLIENRVSGAPGIRVGNVFL
MAGVPGITAQMLDGLTGQLE
GGLPLLSTTVGCWVAESEIA
DLLRETELAFDGCQIGSYPF
FREGKTGANFVIRSVSEDQL
RACAFALEQGLADMGRFPIP
GGI
>_0056.002288_ SARO_25NOV03_CONTIG29_REVISED_GENE2435 saro_25nov03_Contig29_revised_gene2435
VTLRLSDLIDDRPSQGVFRV
NRAIFTDQSVFDAEMRRLFE
GGWVFLGMESQASGPHDFFT
TSAGRVPVMVQRDGEGVLRA
FVNSCPHKGARLAQVRQGNA
RLHVCPYHSWSFDSAGRNKA
VKWKAAGCYSDAFDRDDHGL
AVLPRFEGYRGFLFGSVSPE
VPPLAEHLGEAAKLLDLVAD
QSEEGLELVPGQVTFTYQAN
WKLQLENCSDAYHFTSAHPS
YIRVLERRQKEISEEVVASV
WENSDYWKEDTKGVGGGSFS
MANGHVLNWGVFGVTPAIPL
YERAAQLAERVGEGKRDWMF
NMRNLTIFPNLQVAENASSQ
LRVIRPISPALTEMRTWCIA
PKGESDAARRQRIRQYEDFF
NPTGMATPDDTVSYENCQIG
FAGTTEPWLQGYARGMEASV
EGGNRFSERIGLEPQRSVLA
DSQLCDETLYHSYYRAWAAR
MAPEFAA
>_0037.002508_ NP_953509.1 gi|39997558|ref|NP_953509.1| glycosyl transferase, group 1 family protein [Geobacter sulfurreducens PCA]
MYEALEDTRRRDTLAVLRDA
AAVAAFHKCVRCRVLDHHPS
LAETMAVIPQGVELPGEEFD
WGNERFDRGEFVFFLPAGLR
PVKNAAFALGPLAELHREEP
RVRFLLAGPVLDREYGAATL
EAIDCHPFARYLGEVGRDAI
GALFRRADAVINSSTFEGGM
ANSVLEALAFGKPVLASYID
GNRSVVKEGTTGFLFRGERE
FLDRARDLLRNPALGRRLGE
QGRELVRERFSPGREAEAYL
ELYRRITGA
>_0032.001724_ YP_010281.1 gi|46579473|ref|YP_010281.1| glycosyl transferase, group 1 family protein [Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough]
MRIIILSSSTNRSGGTRQAF
YQARELATRGHHVSLCLPED
SQMHGMGYDDLIVTLPADRK
RWKASIEALFAADGPTVVHA
FHNRAVKFVAWHGMFWRHRG
VVCCAHRGVMYRPGNPLPYI
SPGMDAFIANSQACARVLRL
FTPAGKLFVVYNGVDDARVT
PRTPADTAREQVGLPPRGAE
AAWSSSSPAPLVFGFVGQNS
PVKGADILIDAFARADVGEA
RLLMVGVSHDMWRPRCEALG
IADRVHLVPHTESVSDMLQL
MDAFVLPSRTESLPNTMLEA
IRMGLPVIGSAVGGVPELVR
GNGLLFPAGDIDALAAALGR
MASDHATREAWAAASHAEGE
RYTIHARVDALEDIYAQLLR
RRGLHTA
>_0031.001780_ NP_295125.1 gi|15806419|ref|NP_295125.1| transcriptional repressor, TetR family [Deinococcus radiodurans]
MTPTMDSSSLRERQKERRRA
RIYNVAIDLFKQGGFQGTTA
TDIARASNVSRGTFFNYYPY
KEAVLLDYGSEVMERLRDLA
EQRLAQGVPAMSVLYEIWDT
LADENARERDLFPPLAYEVM
NPNPERARTAYQALPLSKVV
ELVLRPLHQEGQIRTDLSLQ
RISNLIADTYLMVALRWSAY
GTERPLKDEMRLALGLLLEG
ALRRDGPR
>_0030.001769_ DHAF_12NOV03_CONTIG1068_REVISED_GENE2015 dhaf_12nov03_Contig1068_revised_gene2015
MREDPIVATEQTAEQMAEQT
PDPSDFAAVFQHYYPMVVQT
IEKILQERSAAEDLAQDVFW
RLYHAPWQDIGNLKAYLIQS
GINAAYNHLRTSKRQHSLWE
RLTRQTSANEPSAETQWLRA
EEIQRVREVLTELPARDRSL
LLLRFAGLSYKEISETISME
FASVGKSLVRAKERFRKGYL
KRGEY
>_0021.000829_ NP_421115.1 gi|16126551|ref|NP_421115.1| regulatory protein, putative [Caulobacter crescentus CB15]
MTTCYRQPPASMLSATILDS
EAMRRAERLFQIIQILRRSR
APVTADAIAAELETSKRSVY
RDIAALVGQRAPIRGEAGVG
YVLDAGFDMPPLMLTPDEIE
AAVLGAQWVAGRGDPVLAKA
ARDLISKIAAAVPDRLRPYV
LEPAAAAAPAWKPQTDKIDV
AQVRAWIHAGRKIRLNYSDE
AGAISDRVIWPVTVGYRETI
RMIIAWCELRGAFRTFRTDR
VVGAEFMDERHGKRPAVLRA
EWLRFRDAEIAAWEARERAE
C
>_0019.001207_ NP_349212.1 gi|15895863|ref|NP_349212.1| Transcriptional regulator (TetR/AcrR family) [Clostridium acetobutylicum]
MNPLTNRKLQAQNTKNKIYK
ASIELFEKKGYENLKIKDIC
KEAGVSIGSFYNHFDSKHAI
LIEVHKKADEYFKTEVKDNI
ISTNGIDKIIEFFDYYSIYN
DFVGLDTLKQLYHSGNYFFS
QNGRYLQVLLQKIILEGQDK
KEIISTMTTEEICNHLFISA
RGVCYDWCINDGSYDLVDFM
HKHISLIAESFKIN
>_0018.007245_ BFUN_06OCT04_CONTIG482_REVISED_GENE7246 bfun_06oct04_Contig482_revised_gene7246
MEAKPPRRTRERILELSLKL
FNEIGEPNVTTTTIAEEMEI
SPGNLYYHFRNKDDIINSIF
SQFEQEIEKRLRFPDDHRAT
IDEMWSYLQYMVDFTWRYRF
LYRDLNDLLARNRTLETHFK
QIISHKVRFASQFCEQLVAD
GEMVATPEELQVIATNVGVI
GTYWLSYQFVMNPRKYNEQE
AIRAELHQVSVQIVSLMAPY
LRGRSRQIFDDLVSGKLPKR
EFYDYLPPKEGAAPRNEPKD
A
>_0018.001305_ BFUN_06OCT04_CONTIG480_REVISED_GENE912 bfun_06oct04_Contig480_revised_gene912
MKNALIQSGPDTTGRRPSRK
VLIYGLNYAPELTGIGKYSA
EMAESLADVGYEVRVICAPP
YYPEWRIGAGHSAWRYRTEQ
RAAVRIQRAPVWVPSRPSGL
KRLLHLASFAVSSLPTVFAQ
LFWRPDIVIAVAPSLMNIPA
ALMFGKMARARTWLHIQDYE
VDAAFELGMLKGKRLRQFAL
GVESWLMRRFDVVSTISARM
IEHGRNKGVDSPRLFALPNW
VDVNVIFPLDRPSLYRTALN
IPDEAIVVLYSGNMGAKQGI
EVLAQAAASLAHRSDIHFVL
CGDGPYKVNLVEQCGHLANC
TFLSLQPFDKLNDLLNVADI
HVLPQRADAADLVMPSKLTG
MLASGRSIIAMARAGTELFD
VVSPRGVTVPPEDVQALVAA
IENLADDVDQRTRLGAAARA
YAETELSRRAVIERLDGRFQ
MLCDRVRGRSVFT
>_0016.000961_ YP_438752.1 gi|83716361|ref|YP_438752.1| lipopolysaccharide biosynthesis protein, putative [Burkholderia thailandensis E264]
MKHTETSIKSLQIGMHWFPE
RAGGLDRMYYSLVGALPGAG
VAVRGVVAGSERVAADTGGA
IRGFGPATSSLPRRMMAARH
ALRDVVRAERPDVVSSHFAL
YTFPGLDVTRGIPQVSHFQG
PWADESHVEGADSLGQKVKH
RLEQAVYARSSRLIVLSRAF
GQILTSRYNIDPARVRVVPG
CVDTAQFDLPMTPADARRKL
QLPQDRPIVLAVRRLVRRMG
LEDLIDAVKTVRRRHPDVLL
LIAGKGRLEGELQKRIDDAE
LGNNVKLLGFVPDHHLAALY
RAATLSVVPTVALEGFGLIT
VESLASGTPVLVTPVGGLPE
AVAGLSEALVLPQIGACAIA
DGLTAALSGSLVLPDADACR
QYARAHFDNTVIARRVAEVY
EEAIRAAD
>_0004.000710_ 17739093 gi|17739093|gb|AAL41742.1| ring hydroxylating dioxygenase, alpha-subunit [Agrobacterium tumefaciens str. C58 (Dupont)] (gb|AE008688|:726009-727415, Atu0726
MGSEGELRMSQFVANAEANV
AVCAAANDRRCLDEDMLPQP
RKWCRAGGLIEDLAMELRDT
VLRQLKNRREGFSLEQPFYT
DPDYFKLDMETIWYRDWLFV
GHDCEVPKSGNYMTVQVGAY
SVVIVRGRDGQIRALQNSCR
HRGSRVCSAQKGQAARLVCP
YHQWTYDLDGKLLFARHMGE
EFDKAEFGLKPVACETVAGY
VFICLADQPADFAPMRAEVE
SYMAPHRIWEAKVAHESTII
EKGNWKLVWENNRECYHCAA
NHPELCRTYPENPSVTGTDG
GASDPEIGGHWARCEAAGLP
SRFKIDPKGQFRVARMPLIG
EAESYTMSGKRAVRRPLSED
VSISHIGALLLFHYPTTWNH
FLGDHTISFRVLPLNANETM
VTTKWLVHKDAVEGVDYDLE
DLTHVWNETNDQDRRIVEEN
AFGIRSPAYQPGPYSMEDEG
GVMQFVNWYSDFMVDRLSGD
KARLSAVA
>_0003.004395_ ARTH_26JUL04_CONTIG47_REVISED_GENE4401 arth_26jul04_Contig47_revised_gene4401
MRGTTADDRPRRGVGPVLGT
FQDVARIAVLRGGGLGDLLF
AFPAVSALKAAYPGSTVTVL
GTPLHAALVQGTAGPVDAVR
ILPYADGVRPGEEDPAALDS
FFADMQREQFDLALQLHGGG
RYSNPFLLRLGARHTVGTQT
PDAAPLERNLPYAYYQHEPL
RALEVAGLAGAPPVELEASL
RPLPQFAARAGELLDADLPD
ADLPDGVPSRRAGSAGRTTR
PVVVIHPGATDPRRRWPAGR
FAELAAACVADGCRVLVAGD
RSERQLAAEIVDRAGSALVR
PIAGEADLGTLAALLARCDV
MVANDSGPRHLAQALGTPTV
GIYWAGNLINAGPLGRTLHR
VHLSWLTHCPECGADVTQVG
WTAPRCAHDSSLVAGVRAED
VYADVRLLMATSPHLRGRSA
SP
>_0066.001282_ NP_905845.1 gi|34541366|ref|NP_905845.1| hypothetical protein PG1739 [Porphyromonas gingivalis W83]
MEKVHYAAIDVGSNAVRLLI
KCVNSEGMEEPLSKVLIMRV
PIRLGEDSFTKGYIGEEKTD
NMVRLMRAYYEMMQIYRVKD
YRACATSAMRDASNAEAVIA
QIREKTGIHIDIIDGDEEAR
LVSDNHIEQIISDGGNYIYL
DVGGGSTELTIPAAEIFLEV
ADITGAKTIIAPIVGLADGI
IEDLYIRHQSQPS
>_0061.004048_ NPUN_22DEC03_CONTIG1_REVISED_GENENPR1629 npun_22dec03_Contig1_revised_geneNpR1629
MLILDKVELISFIDKQMHSQ
SKQLNILTPSRELPLYGKRI
LVTAPRNYAYRLSEQIIKQG
GLPVFMPTIETCYLSNYAKL
DAALNHIAEFDWIVFTSRNG
ITAFFHRMNDLNIPVSVVEK
CQLCALGKDAESLLSFCGKV
DLIPTESSPAGIVAELAKIP
QIHNKKVLIPAPEVVGLPEP
DVVPNLITDLQQLGTEVIRV
PTYITQGLNTSIYSIELNLI
HQGMIDVIAFSSTAEVESFL
TMVNSQSDYEGCIVACFGPY
TTANARKLGVNVSIVSRDYS
SFEGFAEAIAEFFTLTSNSH
>_0061.001192_ NPUN_22DEC03_CONTIG1_REVISED_GENENPF2445 npun_22dec03_Contig1_revised_geneNpF2445
MDTRTLIYLHQYFSIPTVSG
GTRSWEFSTRLVQDKWQVCM
FCGDSEIHGIPAVNILKLFN
TKNVSFKLNVIPLKYSNYMS
FSRRIFAFLSFAVRSSLQVL
REEKADLTFATSTPLTIAIP
ALLRKWLHGTPYIFEVRDLW
PEMPIAMKAVRSPLAIFLAR
QLELIAYQNASHIVALSPGM
KEGIVKQGISPEKVEVIPNA
CDNARFNISETIGLEFLRQH
PELSGGPLIVYTGTFGHING
VNYLAYLASHMRNIIPEAKF
LVVGSGVCESEVREASCQLG
ILEKNFWMWPPIPKAEMPAL
LSACTVATSLFKPIPEMEHN
SANKFFDALAAGRPVVINYG
GWQKEILEQSGAGISISSND
PKVAAIQLAKFLNSSECLQS
AQAAARKLADTVFDRDILYK
KLANVFQKVLNETHSDI
>_0061.000696_ NPUN_22DEC03_CONTIG1_REVISED_GENENPF1359 npun_22dec03_Contig1_revised_geneNpF1359
VIINSFPKIVKDILRGLPKN
DYPVLNSRLFFECWLSYAMD
NSLTSMRDLFNRLNNTGFPV
DISTFSKANLHRSQKPFQEI
YQKLNELVQKKVQKKLHDKY
AICPIDSTIITLTSKLLWVL
GHHQVKLFSSLNLATGSPSD
NFINFGHDHDYKFGCKMMSS
LPNNAVGVMDRGFAGLKFIQ
ELVQENKYFVLRVKNNWKLE
FEEQTGLIKVGASNDAQAYR
VINFCDLETKTEFRLVTNLP
TLGEAAVSDYEIRDIYRLRW
GVELLWKFLKMHLKLDKLIT
KNVNGITIQIYVTLIAYLIL
QILSVPQQWGHTLLDKFRYL
QSCMCQKISYVHWFEEMMSC
>_0061.000401_ NPUN_22DEC03_CONTIG1_REVISED_GENENPF0762 npun_22dec03_Contig1_revised_geneNpF0762
MKAISNDKPQGVCATDFASV
LGEENAVCLWENIEIGQQKR
IQQAVTSGKPPTCIVYPRTQ
QQLAAVIAKAYSHNWRVLPC
GSGSKLSWGGLAKGVDVVVG
TERINQLIEHAVGDLTVTVE
AGMKFSDLQALLAKSRQFLA
LDPTAPQSATIGGIVATGDT
GSLRQRYGSVRDQLLGVTFV
RADGEIAKAGGRVVKNVAGY
DLMKLLTGSYGTLGFISQLT
FRVYPLSEASGTVVLTGSAE
AVSQAADILRGSALTPVQAD
LLSTKLVSSLGLGEGLGLIA
RFQSISESVKEQSNRVLEVG
QKLGLDGAIFADADEASLWQ
RLQERIHSTATESVITCKIG
VLPTAAVDILTQVGLGLIHI
SSGLGLLQLEDKNQVLKVRE
QLRSAGSDGTQANSGFLTIL
EAPMAVKEQVDVWGYNGNAL
PLMRRIKEQFDSKNILSPGR
FVGGI
>_0056.000757_ SARO_25NOV03_CONTIG26_REVISED_GENE804 saro_25nov03_Contig26_revised_gene804
MSPDVDIKALRCFLALAQEL
SFGRAAERMNLTQPSLSAQI
RKLEDQVGHRLFERTTRAVH
LSPTGKALIEQARTFVSQAD
AFAAHLSAWRERPDRRMVLG
APIYTFELPEHGALLSAIAR
ELPDMSLRVDNGFANSLVEG
LIKGSVDMAMVVAAAVPHDR
YLADMAGEGAGELEMPDGLQ
RITLSDEQIGLAIPEEHPLA
SYDIVPPEALSGSVIAMLAP
LHGRSLYRPISVWLSAAGAT
GFLPPEAHAFALERYCREYR
IPAISIAQFRPRETGNVVYR
PAGGLNVRTELAVLRSTRKQ
RSSIEERLWDLASSLGR
>_0037.000304_ NP_952380.1 gi|39996429|ref|NP_952380.1| homocysteine S-methyltransferase domain protein [Geobacter sulfurreducens PCA]
MTDYVSFSAFLAESPVILGE
GAVIERLRRAGVDLDPWLVN
SALVYAPAGRAALATICREY
LDIGARHDLPLLLSTPTWRA
SRERIEAAGLAGSDVNGDNF
RFLDELRRSYGAYGRKVLIC
GLMSCRGDAYRPAEALSEDE
AREFHSWQADALAAAGVDFL
LAATLPALGEAVGLARAMAA
TGMPHVVSFVVRPGGTLLDG
TPLREAVAALDAAVSPRPVA
YLVNCTHASFFRSALLHEAN
SSPLVRQRVVGLLANTAALS
PEELDNAAELVEESPGTFGR
TVAALHRDLGMKVLGGCCGT
DGRHIECLAAELSGSPVR
>_0033.000541_ YP_048313.1 gi|50119146|ref|YP_048313.1| hypothetical protein ECA0186 [Erwinia carotovora subsp. atroseptica SCRI1043]
MTEPTLLHPSLLPLDGGINF
RDLGGNRAADGRLIRHGKLF
RSGSLDLLSQADCEHLAGVP
ISHVVDYRDVDEIAQKPDIL
WTGANYHAYPANPLRHEVTA
NLDSLGSDVLAAFDSRAFML
ELYRRLPFNNSAYKQLVSLL
LRPDEGGLVQHCAVGKDRTG
IGSALVMFALGADEQTVMED
YLLTDTTLTPFRQQLLAHLS
ETLNEKALGQFSYVLSVQEE
FIVTALQAIYERHGSIDSWL
EVEYGLDNRARNYLQDKYLA
>_0017.003546_ NP_811601.1 gi|29348098|ref|NP_811601.1| hypothetical protein BT2689 [Bacteroides thetaiotaomicron VPI-5482]
MEHGRDASQKAELRERIIMT
ATEAFTLKGIKCITMDDIAA
ALGISKRTLYEVFADKESLL
KECILQKQAERDKYLQEIYE
QSNNVLEVILAVFQKSIEIF
HQTNKRFFEDIKKYPKVYAM
MKDRSESDSEKTMSFFKSGV
EQGIFRADVNFEIVNLLVRE
QFDVLLNTDICNEYPFIEVY
ESIMFTYIRGISTEKGAKVL
EEFISEYRKNRVEQQ
>_0009.003259_ NP_244073.1 gi|15615769|ref|NP_244073.1| BH3207~unknown conserved protein [Bacillus halodurans]
MGVVSSSSKEKVLEAAITLF
QVKGFHGTSVRDIALKANVN
VALVSYYFGGKQGLLEQLNV
QFLEGYIQAMEQATEERLGQ
SSHEKLLAVMEQVLLYEQQA
PSLARLVLREMTLDSTLVRE
IMSTYMRKEKHLLETILRQG
MGNQEFRKQPLDLLLLHIRT
MMTMPFLQPHYLRELYQLSV
NDPSFIKRYMVHVNDWMAAC
LLKKPIASSRLVIHLDS
>_0113.003588_ YP_001090155.1 gi|126701258|ref|YP_001090155.1| putative isochorismatase [Clostridium difficile 630]
MVLLIVDAQKLITNERLYKF
NEFVVNVENLIDTARKNNIE
VIYVRHDDGVENELTKGKNG
FEIYEKFKPCNGEKIFDKKV
NSAFKETGLLEYLTNNGEKD
IIIAGLQTDYCIDATIKCGF
EHGFNIIVPAYSNTTVDNFF
MSAEQSYKYYNEFIWNERYA
KCISLEETLRKMK
>_0077.000269_ NP_371808.1 gi|15924274|ref|NP_371808.1| competence-damage inducible protein [Staphylococcus aureus subsp. aureus Mu50]
MSIAIIAVGSELLLGQIANT
NGQFLSKVFNEIGQNVLEHK
VIGDNKKRLESSVRHALEKY
DTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIE
SYFEEQGQEMTPNNKQQALV
IEGSTVLANHHGMAPGMMVN
FENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELL
RFAGIGESKVETILIDLIDK
QTNPTIAPLAGSHEVYIRLT
ANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAV
IKKIHEPFVIYDGITNGALY
HRLKEVDLNDVLKGMINHNE
NFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVH
IGYDNNFEFKTEQFKMSKSR
NLLKNRSQNYVLIRLLNWLR
TTN
>_0076.002372_ SAMA_14OCT04_CONTIG86_REVISED_GENE2376 sama_14oct04_Contig86_revised_gene2376
MNKPLDKQLAELDIFSLLLF
RAIFETGHANIAARQLDVSA
PKVSRALASLRLIFADELFY
RRQQGFRPTPLAEQIYPAIR
ELTDSINLLGMQLKDHQAFH
RQECQVFDLAVSSGILTTLA
LEFNRREGLCPSVVLHHWQE
NTADRIHAGELDLGLALAPE
PHTELSYERLCDAPGLCLVG
AANHPIWQYTDICLEHICEY
PFLCMNYPGFNDKVDPLELF
CHREGLIPPTVLRVTDKEEW
FGHLLCQHSLAFASPLEWGL
LNALPGVEIKHLPAKEISRL
HSGSAVPGLYLIEKPAHHRR
YSPDDREKLLHIISLTLGLV
TEDHPVNFSI
>_0056.001946_ SARO_25NOV03_CONTIG29_REVISED_GENE2078 saro_25nov03_Contig29_revised_gene2078
MTNTRPNFVRNCWYVAGWDY
EFTAGKPHPRTFLAEPVVFY
RKGDGTLVAMADRCVHRLAP
LSLGRLEGDDIRCMYHGMRF
TADGKCVEIPGQDMIPSSAC
IQTYPVVEKGSWAWIWMGDP
HLADAALLPDARGLDDPVWV
LKSGQLDYAAPHELINDNLL
DLSHLAYVHVASFGATPGWI
TQQPRTTQIERGVRVERWVE
SAPPLPPLPSLAAYESVDMW
ASYEFLIPGVFLMYTSLHPP
GTAKGSNHAAPAGDVLFSNF
TCQAVTPLTAGSSRYFFSWG
PGSQFGGEEIAQQMIDVAMA
AFLEDKLIIEAQARIIAMSP
GEKIMPNAADRTVTIFQRMM
ERMKHPASTSS
>_0053.004186_ MMAG_12JAN01_CONTIG3880_REVISED_GENE4208 mmag_12jan01_Contig3880_revised_gene4208
VARHGYSRISAPLAVVAPLR
ILFVTASRIGDAVLSTGLLA
HLAERYPKARFTVACGQAAA
GLFQSAPFVDKVIPMVKRRR
AGHWIELWRQTAGIFWHQVI
DLRGSALGWLVPTMSRKIIK
SSWEPKHRLLHLSALLGLDH
PLPPVLWSTPDQEAQAARLM
GEGPILALGPGANWTPKQWP
AERFAQLAGRLTGDGGILAG
AKVALFGAESERPSLHALIE
AVPIERRLDLIGRVDLATIH
ACLKRASLYVGNDSGLMHIA
AASHVPTLGLFGPSSEVFYG
PFGPLCAAVRGARSFEDICH
APDFNHRRPDCLMLDLDVDK
VAEAAAGLMAGGRA
>_0052.004968_ NP_105601.1 gi|13474033|ref|NP_105601.1| transcriptional regulator (TetR family) [Mesorhizobium loti]
MADTTPDVETDKCDDLLESL
RRGRPAAGQDPVKRSQIIDG
ARRVFIEKGFEAASMNDITR
EAGVSKGTIYVYFANKEELF
EALIEEERGTIFKNMYDMLD
RADDLRQTLVKFGKVLSMKI
TSARVIQAQRTVIGASDRIP
DMGARFYERGPKRGHDKVVK
FLNAAIERGLLKIDDVDLAA
YQFTELCLAGLFRQCIFAYR
TKAPSQEEIDHIVRSGVDMF
LKNYGTEQLAEEESHQMIAL
EAKA
>_0052.002434_ NP_107308.1 gi|13475741|ref|NP_107308.1| hypothetical protein [Mesorhizobium loti]
MPACSIGWVFRTEISSNIRK
ALGKELDMPRIVPVLDLSRL
EQGASERRTFLADLRSASRD
IGFFYLAGHGISWAEISEVL
TASRQFFALPEADKLAIEMV
KSSQFRGYTRAGGELTKGRE
DWREQLDIGVERQAIAQGPG
TPAWTRLQGPNQWPAALPDL
KPALLAWQSKVTAVAIRLLK
AFAQSLDQPEDAFDPIYSSE
PNHRMKIVRYPGRDTTGGDQ
GVGAHKDGGFLTLLLQDDNK
GLQVDYDGSWVDVDPIPGTL
VVNIGELLELASNGYLRATV
HRVVTPPAGVERISVPFFFS
ARLDATIPLLGLSEELAAQA
RGPASDPDNPLFRDVGTNVL
KSRLRSHPDVARRHYADLLK
GESRVG
>_0045.001096_ LBUL_20SEP02_SCAFFOLD58_REVISED_GENE1628 lbul_20sep02_Scaffold58_revised_gene1628
LRIFGKEGCRMEMQRVIELD
MPVNFRDLGGYQGLDGRQVK
WRKIYRSAALNEMSARDRVK
LANLRITVDCDLRSSREQRS
YPDLLWPGVRFVNIGLYAEG
DRFNQAHPFLRLFHHLPEFD
DYLPKIYQQVLLNEHSEEGI
KRVFEELLKLPEDQALVYHC
AAGKDRTGIISILILMALGV
DDKTIAEDYLLTDELYDFSI
EKQHPTNEKLSQVIAKMNVT
RGEGTAVKGITETIRQGWGS
FDKFFTRKLGFKQADLEKFR
EMYLEEEEED
>_0043.003740_ JANN_22DEC04_CONTIG27_REVISED_GENE3741 jann_22dec04_Contig27_revised_gene3741
MQKYFVSPPKDCRITPVLRY
DMRMNVSDEDLALAAAGGDG
AAYQLLLTRVYDRLFGLCFR
LTGSRTEAEDLTQDICLALP
GKLSGYRAQAKVTTWLYRVA
VNAATDRRRRKASYTRATQG
WGAWEVDRVQTAQEATAGAR
WLYRTMALLPTHLHDTLALV
LDDVTHAEAAEILGVSEGTI
SWRVAEAKKKLREIKEREDA
>_0038.001354_ NP_444226.1 gi|16554502|ref|NP_444226.1| Putative amidase [Halobacterium sp. NRC-1]
MIAGSAGYLLPASPEQRVYL
ADEAWPELGDYFDAESLALV
PLGSTEQHGPHLPESTDHRI
AEAFARTVADRTGVLCTPPV
NVGVSPHHRQFPGTMWVEPP
VFRDYVASFTRNLAFHGIDR
VVFVNAHGGNVSHLREVGRR
LRDEGTLYAVEWMWDESIPE
LVDEVFDQNGPHGGPKETAL
MQYLDGEHVHDDRLEDARDG
GVASVADADTIKHGSRTFYD
AIDNTDNGVLGDQTDATAET
GERLFEAASDQLVQLCEWLD
AQAFADLLPEPHVST
>_0031.001170_ NP_294099.1 gi|15807627|ref|NP_294099.1| conserved hypothetical protein [Deinococcus radiodurans]
MRVCMNIAGNLYTDAMNQGC
RLYQSDMKLYVPGNSSYFYP
DVMLVCGGEPHDRYSETSPC
LLVEVLSGSTADTDRRHKYA
AYTGIASLQTYLIVSQSERH
VVEYRRAGNGWEMHEHRDVG
EVYVACLGRTLTLDEIYRGM
L
>_0028.000670_ DDES_06JUN05_CONTIG143_REVISED_GENEDDE0671 ddes_06jun05_Contig143_revised_geneDde0671
MNSGLRHIPEPRCASPADTA
PPCCAGPLCYVISSYCCCLF
PCFFPKGVYPMTLTRRSAFF
HLPVFTAVILCMVMLTGCAE
EPQEQGPPPVKPVKVLTVGS
KDKGVRRVFPGKVVAGEKVE
LGFRVAGQLTRFPVKESQHV
EQGQTVAELDKSDFITKVRN
IESQLGGARASLNEATLNFK
RMETLLGQDTISKADYDKAR
ASMDNANAKVLSLTQQLKQA
TQDLEYTTLRAPFSGVIAKK
YVKNYELVQAQQPVLKLENT
DRLDVEVEVPEFVIAQLRHQ
DRKNMPAPVARFSAFPGRSF
ELSLKEYQTSANPQTQTYTV
TLTMQSPDDIRLLPGMTADV
EGTLPFGGDIDATSLPVAAV
VGGEDDRTYIWVLDKESMTV
SRRAVVTGAIHEDKVAITQG
LEPGMTVVAAGANYLHEGQK
VRILNGKIGGGQ
>_0028.000252_ DDES_06JUN05_CONTIG143_REVISED_GENEDDE0253 ddes_06jun05_Contig143_revised_geneDde0253
MHKAGRAKAEKHMRQLELKD
SMKIGIKELDDQHQQLTEII
NELYYAYMQGNHRAVLCGLI
TRLNDYAHEHFALERQYMER
FVFEMPDYEQHMQEHREFFT
DAIGFLLRYIEEGSEITPEM
LDYLQGWWKDHVMVRDKELG
RFLRSRGVTA
>_0024.003018_ CHUT_08NOV04_CONTIG199_REVISED_GENE539 chut_08nov04_Contig199_revised_gene539
MRILEINTEKGWRGGENQTL
LALIGFRKLGHEAELLCFEN
SALHVQAAAAGFTCHPLTSS
TKSIGFLMEYGKNYSILHTQ
TSKQLTYCILTKPFHNSKVI
LSRRVDFVPKGFFTLLKYNA
CDGIICVSGAIEKILKQSGI
KTRTVVISDCVTEKTLNKTR
AQELLQKLTISGKNIIGTTA
ALVPHKDPVTLVNAVNILRT
KRSDFVLLHFGSGPLAATIQ
QFITDNNLQDYYKLIGFKER
VEDYFSIFNYFVMSSQEEGL
GSSVLDAFVYKVPVVSTNAG
GLNELVTGRGYVTEKKNAQL
LAEALHTAMNSPEQNKKNVA
AGYTYAVSNLSVEKIHEEHI
DFFKTV
>_0018.000681_ BFUN_06OCT04_CONTIG480_REVISED_GENE350 bfun_06oct04_Contig480_revised_gene350
MSTLENVHASPIHFMSKPAE
IEHTQRPLNEASHAPGYIYG
DPDVLRREKERIFMKDWLCI
AHVDELPNPGDFVTHTVIDE
PVLIVRNRSGVLQAFYNQCR
HRGVEVAEGRGNAKIFKCPY
HAWSYDLDGKLIGVPFMKEA
QGFDQKNCSLKPVRLDTWGG
FIHISFDPDAEPLSSYMAEY
EQEFGMLRQGELRLGLRWET
DFDCNWKFVYENLMDIYHVG
VTHADTIGRYQDQSSYRYLQ
LPRGRASIHYRAKTMSETGS
SLFGRLPWIDDDSFARIGYL
PPNLTMLARCDYVRPVTHWP
TAVNRTHSVAYFLFPEDKIA
DPQFQEKIQTYVKFVEQVLD
EDRGMILSLQRAMNTRGFEP
GRMSFMENAIHHALGYHLER
LFGPQSA
>_0010.000556_ YP_033400.1 gi|49475359|ref|YP_033400.1| hypothetical protein BH05660 [Bartonella henselae str. Houston-1]
MINFLPYSLDILRAADRDRY
ISVLFAPKKKRRALAALYAF
NAEIARIRENVHNPLIGEIR
LRWWYDSIAKSEMEKSESNP
ILSDLFMAMTLFNLPKTAFL
RYCDAQILDLYHNPIATLYD
LEFYCGETASIILQLSCQIL
DPDMAQNFTDAYQHAGIAQG
LSGVLRLLSFMQSRYQYYLP
ADMLKALGIKREELESNRIS
KEQKCHVIEAMVALSRDHYN
RFYEYFNMMPKTLKPAFLPL
AIIPASLQKAIQLGAAVFQE
NAALPLLHRYWFITKAAISS
NLPKIL
>_0005.004123_ YP_322847.1 gi|75908551|ref|YP_322847.1| Protein of unknown function DUF820 [Anabaena variabilis ATCC 29413]
MTQAIPKLVTFEEFVDRLPE
NSGIRYELHNGSIVEMAQPV
GDHEEVKGFIAKKVTVEFAR
LDLPFIIPNQVIVRPLEKDS
GYFPDVLVLNQTNLINEPLW
KKTSTISLGASIPLVIEIVS
TNWRDDYYLKYADYEEMGIP
EYWIVDYAALGGRNFIGSPK
QPTISVCNLVDGEYQISKFR
DNDVIISQTFPELNLTPNQI
FQAGLVDS
>_0005.001309_ YP_322596.1 gi|75908300|ref|YP_322596.1| Protein of unknown function DUF820 [Anabaena variabilis ATCC 29413]
MGVYHRIRVSRQTTTLPNII
LTKKMIAAKDKAPQLTPQEY
FIWEEQQLEKHEYINGEVYA
MTGGSVNHGRIAIRFTAMFD
SHLQNTGCITGNSDIKVNIF
GSNNYTYPDASVTCDVRDQT
TTQYITYPCLIVEVLSKTTE
AYDRGGKFRMYRQNPALIDY
LLVSSTSVEIDLYHKNDAGD
WLIINYKPGDTIELKSINLN
FPIEKVYRGLTLEPENGG
>_0004.004077_ 17742778 gi|17742778|gb|AAL45109.1| formyltetrahydrofolate deformylase [Agrobacterium tumefaciens str. C58 (Dupont)] (gb|AE008689|:1442543-1443508, Atu4315
MAGGSFMDDLRRGAGDLSVR
ASVREQDLNTYIMKVSCPAR
SGIVAAVSGYLARSGCNIND
SSQFTDQETARFFMRLSFIS
EQGSGREALLDGFGSVAADF
DMDYDIHDLSQKKKIVIMVS
RFGHCLNDLLYRSRIGALPV
EIVAVISNHLDYQKQVVNED
IPFHHIRVTPETKPEAEGAI
LQVVRDTGAELVVLARYMQV
LSDQLCQEMSGRIINIHHSF
LPSFKGANPYKQAYERGVRL
IGATAHYVTADLDEGPIIEQ
DTIRVTHAQSGMDYVSLGRD
VESQVLARAIHAHIHQRVFL
NGNKTVVFPASPGEHVSERM
G
>_0112.001592_ YP_909492.1 gi|119025647|ref|YP_909492.1| probable 6-phosphogluconolactonase [Bifidobacterium adolescentis ATCC 15703]
MNVTERKTVVYPNPQVLAEA
VAARTLLTIIDLLAEPNRKR
VDIAVTGGTDGNRVFAAMNA
SPLNDAVDWSRVHMWWGDER
FVAADDDDRNAKQAREAWYG
ALVESGRMPAANIHAMPADT
RGAEEIAAASPEQTDAVLAE
AAAEYQRELIEQLGENPALD
IAMFGMGPDAHFASLFPDHG
EAEIDDPHVLVAGVRDSPKP
PPLRLTLTVPMIARSKHTWV
FTSEERKASAVKAAFAQRNN
PHAPSSYADGEELLWLIDEG
AASKL
>_0111.000209_ YP_210857.1 gi|60680713|ref|YP_210857.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343]
MNTNERPEMTEKQSCHWYLA
FTASRAEQRVKQELDQRKVR
NYLPLRKITYQWQGRSREAL
CPQIARCVLIWTSLSDIRQL
SGISGLIIPQNIWDYRVPEW
QVESYQLLFSQMDTAVEWIP
DCLESATMVRVTGGPLTGLV
GELDTSDTGFRIRIRFHSMG
CFRVAVPEEWIEKF
>_0090.002210_ YP_165425.1 gi|56695078|ref|YP_165425.1| transcriptional regulator, TetR family [Silicibacter pomeroyi DSS-3]
MTRPPQKRRLETRARLLAEA
ARLVEAQGYAGLRVEDVVEA
AGVAKGTLFSHFTDKDGLLA
VLIGAEVMRLIDGMETAGPP
DDLPQLMHRLAPLLDFIASD
RVIFDLLLRYSGSTGAERNE
VVADGFYRQIDLWAGWIAGM
QAAGTVRGDHPPALLAEGIQ
AFLNQIIAIRFCQGGQATGT
PAGALYPFLAAWLIT
>_0076.003229_ SAMA_14OCT04_CONTIG97_REVISED_GENE3233 sama_14oct04_Contig97_revised_gene3233
MDFVAVAVHTEYRCNQGWET
RAECHWFVSTIRAIMTATQS
ISLVGGEGDELLMQRYASGD
IQAFDTLYRRHKGGLYRYFL
RQIGDSQLAEDLYQETWGRV
IKAAPAYEISAKFTTWLYRI
AHNLLIDHVRAVKPLNEADT
LDEEGMALTDSMTPVRSHEH
DLKVQALKHCVGLLPQVQKE
AFLLSSEMGFTALMISEIAS
VSLEATKSRIRYAYQSLKTC
VAKRLGEDSDER
>_0076.001704_ SAMA_14OCT04_CONTIG64_REVISED_GENE1707 sama_14oct04_Contig64_revised_gene1707
MGVPGMNKEAKVLKEAVFKS
FDNTDSLETQLADRIARQLQ
DAVDARGKASLVVSGGSTPL
KLFKALSNKAIDWNEVFVTL
ADERWVDNAHKDSNERLVRE
NLLQNRAASAKFRGLKNMFA
SAEEGAAMTSEHLANVPRPF
DVVVLGMGNDGHTCSWFPCS
DDLMRALDSDALCEAVTPRT
APHERITLTKKAILNSRQIY
LHLVGEQKLSVYRQALESDD
IKAMPIRVVLGQHKTPVDVY
WSA
>_0074.002315_ RRUB_10JAN05_CONTIG98_REVISED_GENE3082 rrub_10jan05_Contig98_revised_gene3082
MEKSTSPAVDGRSASRSGAP
WTGAAPWRPLIWLDVYSVGD
PLLDDDHRRLMEEINHLGAA
LINQIAPVSEALIAPLKRLA
HQEAEHNLREEAILAQLGYP
GLEDHRAEHRQLESGLGALV
ESLIPQGPIEPEILADLLKD
WFVRHVLGQDMRYKTYVLEG
RERAAPPRPPLAQPKT
>_0072.000809_ PROC_21JUN05_CONTIG39_REVISED_GENEPMN12A0811 proc_21jun05_Contig39_revised_genePMN12a0811
MSIDLVVPKEVELPTLLDEL
RKLSWASADVLMAYARGGEP
PYGFPKSLNVEEGGDGPVSA
ADMAVNELLISGLKDNLAFK
EWDILSEETSKEKTFQQDNY
KKDWCWILDPLDGTKDFLQG
SENYAVHIALAYKKKPKIGI
VLIPEKNELWFGIVGIGAWF
EDRDGSKNHFSFSDRLDISK
LILVSSKNHQQSKLNNLLST
LCFGETKKIGSVGCKVASIL
RGEADVYISLSGKTSPKDWD
MAAPHALIEAAGGMFSHADG
KNLVYQEKNYSQSGCLIASH
GKSHQKICQKAMDFFSLEEP
KYFV
>_0071.001709_ NP_745886.1 gi|26990461|ref|NP_745886.1| transcriptional regulator, TetR family [Pseudomonas putida KT2440]
MPPVNAAMRCANFEERRDRA
MALFAEKGFGQVSMRELAAH
VGLTAGSLYHHFPSKQDLLY
DLIEELYEELQATLDQARRA
MARGASALSCLIAAHWQLHA
ERPLQFRLAERDLCCLSEAQ
QAHLASLRKRYEAGLLRLIA
PQAKLPGQALDATAHVLATL
LNQLPGLLKAMPEEQGLELM
ENLLVGGIERTLR
>_0067.000935_ NP_142993.1 gi|14590920|ref|NP_142993.1| aspartokinase [Pyrococcus horikoshii]
MNLRGKMIVIKFGGSSLRSE
FKSAVSLIKALSEEKDVVVV
VSALKGITDLLEKYTDTFDS
RYAVEVSKTYLEFGKRMGID
TSSLSPYLKQLFNPPDLPPQ
ALRDYILSIGELLSAAMIAE
KANGAVIFPWDLFVAHGSFG
NGFIDIKKSKRNVKLVKEAL
ESGKIPIIPGFIANLNGYRV
TLGRGGSDYSAVALGVLLNS
ELVAIMSDVEGIFTADPKMI
PYSLLIPYMSYDEILIASKY
GMEAIQWKAAKLAKEYEALI
LFGRASDWRMGTVVSNSSSH
MPLLSYDQGKLLVMNMDSEI
PYEVVEEGEFWRVYRVPKRD
SIKIIKELHRKIIYQENAQL
LGRVKA
>_0066.000552_ NP_906205.1 gi|34541726|ref|NP_906205.1| DNA-binding protein, histone-like family [Porphyromonas gingivalis W83]
MIKIKAIERKAGFGKTSKTL
WYPAIHLHSDVKFEEFIELV
SDETTVSSADIKAVFDRAAK
VLIRLLQDGKSIDCGDMGTY
RPSITAKAGSGVDSADKVTV
ELVDKAKVIYTPRMKVKTAL
KGVRMERAERVLDVPYASSI
KPNENNSGGSSSSDNNGHAG
L
>_0061.006474_ NPUN_22DEC03_CONTIG1_REVISED_GENENPR6327 npun_22dec03_Contig1_revised_geneNpR6327
MFQQIAAQITFSDSFPYLVT
ALGITSTAGIFGWRWWKQKN
TYKSLQSFPSPKRHWLLGNI
PQVLAAVKEKKFFQLLFDWS
QQLGPMYVYWTGFPVLVLSK
PKVIEDTIVNGMRDGSLIRS
QRASKAWNDIGGPILLGQNG
SEWQYRRKAWNPEFSSSGLS
KYVEIINQACEQIIEKIQSV
ASPEVQVDPLFVELTMRVIS
CLVLGIPVDKNIATNEGQPL
DVLKVYEAMSIVGYRFLRVA
TGEKIWMKYLPTKNSRDYWA
ARRYLEEFITPRVDLALQMR
EQNQTDLTQVSPLFQESMLV
KIAAKEPKYNRETLVAEVIE
LLIAGTDTTAHTLSFAIGEL
ALNPRVFHQAQAVVDQVWES
QGTINGESLKELNYIRAILK
ETLRLYSVASGSTSLEAQRD
TVIEGTVIPRGTKIYWSMLA
AGRDPEVYSHPDEFLPERWL
EKGKENSQLPMIDFGSGSHR
CLGEHLSMLEGTMMLALLVY
YFDWELVNGRSSLEQLQQNL
LIYPPDRMPVRFRLRK
>_0055.004296_ RGEL_26JUN05_CONTIG562_REVISED_GENEMPEA3671 rgel_26jun05_Contig562_revised_geneMpeA3671
MLTLRQALLALFHQFETLFH
YLEHLCRHRSAARPGRSSFL
HSSVEIQVKETLIRNLWYVA
GTSDEFAPGQLVGQTIVGLP
LVLWRPEAGGEVVAFDGRCC
HKRMPLAAGKLLADGTLECA
YHGLCFDSAGKCVKIPSQPG
RAIPSRAKLRPYPIVEQDGM
VWIWMGDDANPALRPPRIPE
LASPEWEAIRVQNAEVPTNY
LLLIENLLDISHFYPLHDGN
IGDIANSEIPVEFSHEGVQG
NRSVTSVRKAESYRHPPYLE
DFFGYELVDRHHSHSMISPA
AIRVDLRCAPPGRLETEDER
GYILTHLITPIDERHHRWRV
IAACRAGHRWPADPSVSTVA
RVAEKFPGVIAQDLWALTEQ
QKMLDLADTHYLGEMHLRAD
TGILKAREIVRDMVAAEAQP
ASQAVAA
>_0051.000680_ NP_247756.1 gi|15668952|ref|NP_247756.1| cobalamin biosynthesis precorrin-2 methyltransferase (cbiL) [Methanococcus jannaschii]
MNKLVKKVYGVGVGVGDKKL
LTLKALEVLKKVDKIFVPVS
KKGKKSIAYEIIKDYVDGKN
IEELLFPMIKDKERLKKYWE
NALEKVLKEDGEVAIITIGD
PTLYSTFSYVWKLLKERGVE
VEIVNGISSIFASAAALNIP
LVEGDEKLCILPQGKDLEKY
IDEFDTIIIMKTKNLNEKLS
VIKNRDDYIIGLVKRATFED
EKVVIGKLDEINFDEFNDYL
SLAIIKRFKR
>_0049.002241_ NP_786051.1 gi|28379159|ref|NP_786051.1| N-acetylglucosamine/galactosamine PTS, EIIA [Lactobacillus plantarum WCFS1]
MKIIVSGHGNYASGLQSTIH
LLAGDIANIEYIDFTDNMDD
IQLSERFQRAVIGENNVVFM
CDLLGGTPFKEAVKLSQVSE
KDIAVTSGCNVGALLEVGFE
LTTYSAPAKKLAEKLVKISQ
VQTKVFHHQAIQVDDGVEGI
>_0006.004465_ NP_890881.1 gi|33603321|ref|NP_890881.1| hypothetical protein BB4347 [Bordetella bronchiseptica RB50]
MRCPFCGNADTQVVDSRVSE
EGDTIRRRRRCLSCDKRFTT
YERVELAMPSVVKRDGSRTE
YDAGKVRGSLSLALRKRPVS
TDEVDSAVARIEETLLASGM
REVPSEQIGELVMGELKRLD
KVAYVRYASVYKSFEDIGEF
VEAIREMQGPLLPGKKLRKD
>_0094.000217_ SSUI_28JUL04_CONTIG158_REVISED_GENE219 ssui_28jul04_Contig158_revised_gene219
MKETQMLKGVLDGCVLQIIS
QKEIYGYELVQELRNQGFEN
MVGGTVYPLLQKLEKNDLIL
SQNKPSPDGPDRKYFYLTDQ
GKAYLEDFWSQWTELVQKVQ
RLKGE
>_0088.001719_ NP_719851.1 gi|24375808|ref|NP_719851.1| transcriptional regulator, TetR family [Shewanella oneidensis MR-1]
MNERSFISMSIGNRMDSKRD
LILRSAEKIIATEGLHNLSM
QKLAVDAGVAAGTIYRYFKD
KEDLIIKLRKDVLQQIASKL
LENIDEGSFDEKFRRLWFNI
VELGREQSHANLSFAQYSHL
PGVDAPEHQAFEREIFQPLH
QLFEQAKGQGVIQPLNNALL
FSIAFEPAVAIAKRLRRGHL
QCTEHEIQQACELCLQAISV
TL
>_0085.001409_ SHEW_20DEC04_CONTIG142_REVISED_GENE1410 shew_20dec04_Contig142_revised_gene1410
MLYVIKRPLAVAFYRLPLHR
TLGRGIDLLLITLQHAGRGL
PQREITGRFPQFIAIGLMIK
RKKLIQCRQRRHLAVTRILS
IMCAYFDMEKRLMTQVHDPY
RDAPALSKLTLGKSTGYQAQ
YDASLLQGVPRQLNRDAIAL
GDTLPFHGADIWTGYELSWL
NAKGKPMVAIAEFILDFNSD
NLIESKSFKLYLNSFNQTRF
DSIEQVQQTLAKDLSACAGG
EVVVKIIEPKQFAHQRVVEL
PGTCIDDLDIEIDSYEFSSD
YLIDSTDDKSVVAETLTSNL
LKSNCLITSQPDWGSVMIRY
QGPKIDREKLLRYLISFRQH
NEFHEQCVERIFVDLKRLCH
CAKLTVYARYTRRGGLDINP
YRSDFENPPENHRLARQ
>_0077.001098_ NP_371196.1 gi|15923662|ref|NP_371196.1| LysR family transcriptional regulator [Staphylococcus aureus subsp. aureus Mu50]
MIIEHARDMLKRERLFFDKM
QAHIGEVNGTISIGCSSLIG
QTLLPEVLSLYNAQFPNVEI
QVQVGSTEQIKANHRDYHVM
ITRGNKVMNLANTHLFNDDH
YFIFPKNRRDDVTKLPFIEF
QADPIYINQIKQWYNDNLEQ
DYHATITVDQVATCKEMLIS
GVGVTILPEIMMKNISKEQF
EFEKVEIDNEPLIRSTFMSY
DPSMLQLPQVDSFVNLMASF
VEQPKA
>_0060.001516_ NMUL_10JAN05_CONTIG15_REVISED_GENE1517 nmul_10jan05_Contig15_revised_gene1517
MKDSALRVGIYQGPEIPQSF
KVYAENVWRHLPKQDIATIP
FKDRKDLPKSADVLWDIRSG
GGNPPPDFLLEHPLPPLVVT
VHGFAPLSLNGWEYFRTLKG
LIMSGQYAKHKRERWREVRT
AVGSIIAVSAFVKDEAIRFT
GVPADRIHVCHHGVDGNAFT
PGPDTESEPYFFHVSNDEPR
KNVGAIVRAFRQLRRHCRVQ
LVLKLPEESARNYEKIEGIR
VLSGFLTTEELVHLYRHALA
FIFPSLYEGFGLPILEAMAC
GCPVITSNVSACREIAGEAA
RTINPRNESELLEAMEILYR
NPEERRARTAMGLRRALGFS
WEESAKCHARVLYMTADRNA
PVASPD
>_0055.004099_ RGEL_26JUN05_CONTIG562_REVISED_GENEMPEA3474 rgel_26jun05_Contig562_revised_geneMpeA3474
MSSRRLRIGLLTHSVHPRGG
VIHTLELADALHEAGHEVTV
MAPALPGQALFRTPRCAVEL
VPVAPAPADLASMVASRRDA
CIDHLAPRLERGVGWDVLHA
QDGIGGNALATLQERGLIDG
FVRTVHHLDRFDDARVMAWQ
ERAFLRARQVLCVSQTWCDT
LRREHGVAAALVHNGVDLQR
YGRQAGAADARVRRRFGLRV
GAAHDAPVYLAVGGIEERKN
TVRVLQAFAALRARQPQAQL
VIAGGASLLDHDRYAREFTE
ALAASGLRVGPGADVVITGT
VADDEMPALFRAADVLVMAS
LREGFGLVVLEALACGTPVV
VSRQAPFTEYLPADERHGEA
CWADPLNPLSIADAMARACE
PERAQALARAVPEVCRRYSW
TASAARHVALYRAMRALVGH
GVPLAAAVPTEPAAMDAAPV
VS
>_0055.001306_ RGEL_26JUN05_CONTIG562_REVISED_GENEMPEA0675 rgel_26jun05_Contig562_revised_geneMpeA0675
MTTASTTLRDLVGLGHRPAA
LGEAALIMIDCQNTYRQGVM
QLTGVEEALVEARKLLEIAR
ARRMPIFHIQHDAGAGSPYD
VRAEIGAISAEVAPIAGEPV
ITKHYPNSFVQTDLDERLKA
LGIQQIVLAGFMTHMCINST
AHGGFNLGYAPTVVASATAT
RALQGPNGKVLTAREVHDGA
LASTRDLYAAVVDSVADLGN
>_0049.000065_ NP_784849.1 gi|28377957|ref|NP_784849.1| glycosyltransferase [Lactobacillus plantarum WCFS1]
MIMRILVVGDFLKTSGMTRY
IFNVIGRIHASDFQVDALSI
SGKDECKGQVKKMGWGFYCV
QAANNNLLRHLVQSFIFFKK
HAKDYDVIHFNESALWNFLP
IIFAHLFGAKRIILNSHNTY
FATEGSKKLYVVLEIMHRIG
KWLVAHVVAQNIAVSEEAAR
WMFTRKTINRHEYKIIVNGI
ELEKFAYNKEQRFKIRKSLK
INEDTFLFGNVGIFNARKNQ
LRLLEIFNELVKRNLDVKLV
LVGDGPIKEAIVAKISELRL
ADKVVMTGLINNTNEYYQAM
DGVIMPSLNEGLSTVLLEAQ
TSGLQFILSEGLPLGNHIDL
LVHEVPLSESNRVWADVVEH
NMNREKREVFGSIMQKKGFD
VELSAKELYQTYLEER
>_0048.001278_ YP_013453.1 gi|46907064|ref|YP_013453.1| transcriptional activator, putative [Listeria monocytogenes str. 4b F2365]
MVAYGELIREVRLSKGLTQK
EVYTGVISKSYAIGFEKGKH
DITLVLFEEILERVMLSSDE
FFFMNRGYSLAEEDNFWYKF
ANAANQKSLADLQELYQEVL
QQTGDRANLRKAIVHSRMEI
NEQFLLNNRFDVSIVSEKDK
AVIQTYLWKVQSWTLEEIRI
FANSVDYFEEDVQIYFFQLV
LKSLEKYKHYDRGKKVFSTL
LSNIIEELITRNQLEYAAQL
LEILHELSSTHDCAFYRIMH
NYYQGLIWMKNDQVEQGLKE
SKSAIRILDVLDYKSLAQLY
NTLLQQFLEKENIQIV
>_0036.001024_ EXIG_01APR05_CONTIG276_REVISED_GENE1036 exig_01apr05_Contig276_revised_gene1036
MRQAVLVIDFQQDLVEGTAE
EAGVHAKENMIQVINQVVQE
AENEGHVMIFIRDLDVANGQ
GEGFAVHSSIQIPDQAVTFD
KAATNSFHGTPLLDYLKQHR
VEHIVILGCKTEHCIDTAVR
SATVNGFDVTLVADGHTTNG
SDVLSAEQMIAHHNQVLHGH
YNVEHFAIVRPSTETVFEPI
HHQYRK
>_0033.001590_ YP_048509.1 gi|50119342|ref|YP_048509.1| hypothetical protein ECA0383 [Erwinia carotovora subsp. atroseptica SCRI1043]
MITGNVHHLDLVPYLPAKLR
EAIEYVKQNITADTPLGKHD
IEGNSVFVLISNDSTDLLEK
RRAEYHAKYLDIQIVLSGVE
GMTFSNLPAGKPDTDWLADK
DIAFLPAGEQEKLFVMQEGD
FVVFFPGEVHKPLCAVGEPA
HVRKAVVKIDASLVV
>_0023.001152_ NP_599656.1 gi|19551654|ref|NP_599656.1| exopolyphosphatase [Corynebacterium glutamicum ATCC 13032]
MSNWRTPLRLVELLDDSGAI
SEKGINKLTSAVGEAADLAK
TLGCAELMPFATSAVRSATN
SEAVLDHVEKETGVRLSILS
GEDEARQTFLAVRRWYGWSA
GRITNLDIGGGSLELSSGTD
ESPDLAFSLDLGAGRLTHNW
FDTDPPARKKINLLRDYIDA
ELAEPARQMRTLGPARLAVG
TSKTFRTLARLTGAAPSSAG
PHVTRTLTAPGLRQLIAFIS
RMTAADRAELEGISSDRSHQ
IVAGALVAEAAMRALDIDKV
EICPWALREGVILTRIDKGL
E
>_0022.000937_ NP_939051.1 gi|38233284|ref|NP_939051.1| Putative reducing hydrogenase alpha subunit [Corynebacterium diphtheriae NCTC 13129]
MSTTLRLDQFVDPFEAKVVY
TDSGGYFDLSGLPRLDPMLV
GRNVAEVPDIVKRLCGLCPV
AHHLAGVRALDALCGVEVPE
SAQLVRLLLHHGSILYASRD
MDIKRLGKAVMAAAGSPGHF
PDVAIPGGVRALPDPQALAE
LRLPENYEESFEPVPYDGFD
MMLTSHGTLDPLGDHVTARS
GEERITFDLQTWADHVAESR
PGDPAPRPLVHGHPYRVGPY
AHGEAMVPRSLAEIRRIIAD
PRLCEGEFRKESSILSGIGV
GAVEGPRGLLVHRYVANEDG
VLVDCQILTPTAQNEAWLAS
MLEASLQQDSDRGVELSVEN
SIRTANPCLPCSSAPEGHMG
VVIEKGN
>_0020.000861_ CAUR_25MAY01_CONTIG1079_REVISED_GENE1276 caur_25may01_Contig1079_revised_gene1276
MNGSALYNIGFVLEQALGHV
THAKNLQANISNDPDVRPHW
ALIPFETHGLAARIPLYKSN
WTVRAGLRARRSLRRLTRHT
TLDALFFHTQVPAVLAADWL
QRYPGIVSLDATPLQYDQLG
PYYQHDPGPPWLERIKWQLN
RRCFQLARHLVTWSQWAKDG
LIEGYGVPADKITVIPPGVN
VHEWQRPTPRTRHEGPVKIL
FVGANLERKGGLLLIEAFRA
LRPLGVELHLVTKDQVPDEP
GVFVYHGMQPNSAPLKALYH
QADIFALPTFGDCLPMVLSE
AAAAGLPAVTTRVAAIPEIV
RDGETGLLIPAGDLNALTEA
LRRLITRPDERLRFGERATI
HVSRMYDARHNAGRLLDLIK
GEVDLARMQERIPA
>_0019.000691_ NP_348086.1 gi|15894737|ref|NP_348086.1| PTS system, fructose(mannose)-specific IIB [Clostridium acetobutylicum]
MSVSFLRIDDRMIHGQTCTR
WALEYPCDGIIAVNDAAANN
PVLKAAYKSASGKKTFVWTY
EHWKLKCDTVLKSSTRYFVI
TKEPIIMSKILVDDKFNPGI
KEVIVGPCNDRPGTVKLGNN
QSINQKEAEAFERIMQAGYN
VEFALLKEEAIGNWKKFRGQ
FGFK
>_0018.000390_ BFUN_06OCT04_CONTIG480_REVISED_GENE135 bfun_06oct04_Contig480_revised_gene135
VPESIVTPPMRASAPHADGA
RDASPFVPVRSPATFAQSPV
SLAFGQPLLLGLFLPIQAGG
WSASTLPRTTDWTFDYNLEL
VQKAEAFGFDLVFALSQWLP
NGGYGGVFNGQALDSFMSLA
AMTARTERIILVATSHVLYG
PWHPLHFAKFTATLDHISKG
RWGINVVTGHRAIEHEMFGW
HRIDHDRRYQLAAEFLDAVQ
QLWAQPDNFSFAPQLSSWKL
DKAFVTPKPRFGRPLLVNAT
GSDAGIEFAARYSDVVFITS
PAGSEIEAALAALPAHTARV
KAAAAAHGRPIRTLINPMVI
CRETAAEARAYHDAIVAHGD
EGSFHRFDSDAHAWRGGAGQ
RNSAAARAVGGNIAIVGSPQ
QIADYIVRLHRAGIDGVQLS
FFDFKPDLEFFGDRVLPLLR
DAGLRH
>_0017.002650_ NP_810164.1 gi|29346661|ref|NP_810164.1| transcriptional regulator, MarR family [Bacteroides thetaiotaomicron VPI-5482]
MIREGAEFRELMLQVFRTRM
AFRRSMQRTLRKNNAGITFE
MLQVLSCLWHEQGISQQILA
ERIAKDKACLTNLMNNLEKK
GYVHRKEDPADRRNKQVYLT
PEGEEFKEQIRPILDQVYVY
AEQVIGIESIELMLSELKGV
YDVLENV
>_0016.000649_ YP_440318.1 gi|83717228|ref|YP_440318.1| transcriptional regulator, LysR family [Burkholderia thailandensis E264]
MMRFRAAMPRVSLSLEEVTV
PDALARLRNGALDIAAIHHI
PALERDFAQSPLCSTPFVVA
MREGHPLAGARRLAELLDAE
WIVTVGADQFPHSVMMSMFN
AHGLPLPQRLLRAPSSFAVT
LGLVARSDVIGCFTKPLAAM
VAPLGIRAAHLDDMLPSYDL
SILSRRDLLPTPAVAQFVAC
LRQAADETLT
>_0004.004577_ 17743329 gi|17743329|gb|AAL45609.1| glycosyltransferase [Agrobacterium tumefaciens str. C58 (Dupont)] (gb|AE008689|:c1995280-1994105, Atu4815
MKIIHVIASIDPKHGGLQAV
AMRLAAAQAGLGLDVNIVSY
GDAAIEAQVKEIGRSIPHFE
NIHWHLLPPAGRLETLFCFR
GRRMLKALLKDASFMHIHGV
WEPFLLYASKLARAAGVPYC
ICPAGMLDHWSLGQRSWKKK
IALMLCYRRMLNEAAFLHLL
NVDEMAAVETLNFQARNLII
PNGVFAEEFDPLPARGHFRQ
KIALAHGRRYILFLSRLHIK
KGIDILASAFAAICETYVDV
DLVVAGPPGGAEGHFMHLVK
KLNIRHRVFMVGAIYGKAKL
EAMVDADCFCLPSRQEGFSM
AITEALACGTPVVITDQCHF
PEVGSADAGLIVSVDAAEVA
KALASMLGNPARARTMGENG
RRLVLEKFTWPAIAHATLEG
YRLSALEAAAS
>_0003.003178_ ARTH_26JUL04_CONTIG45_REVISED_GENE3183 arth_26jul04_Contig45_revised_gene3183
MNPSSRHPQHSDTAASGASE
GVPRRYASGRQYELRRGDAL
AVVTELAAGLRLYSRGGVQL
TETYGDGDIPPGATGITLAP
WANRVEDGVWYLNGKKQQLD
ITEVSRNNASHGLLRNAAYE
LVDEAEFSVTLEAPVFPQHG
YPFLVRHRVQYLLAEDLGLV
VRQTLLNDSQAPAPFVLGAH
PYLRLGDVPASDLVLTVGTG
SRLVADERLIPRSSEQVDGA
TDLRGGRTVSELDIDVAYTD
LTFDGGVARQTLKASDGRSV
SLWQDENCSYVHVFVTDQYP
GRAKAVAIEPMTGPANAFNS
GDGLRWLPAGESFTMTWGIS
ASL
>_0114.002261_ YP_877628.1 gi|118444554|ref|YP_877628.1| Transcriptional regulator, AcrR family, putative [Clostridium novyi NT]
MPKQTFLNLSSERQKEIINI
SLKEFSSHNFETASMNKIIT
ELGIAKGSFYRYFKNKNDLY
LFLLDYAVDKKIDYLERHID
TESNNFFEIYRSVVFNYMKF
DLTFPIMSKFLRSAVENRDI
EQTKILNSLNGKTFIENVVI
HGQEQGQIKKTLSVDFIILC
IINLSESIINYIKLKLGIDY
KDLLNMLDGKAIHYKNQLED
IFNQLMSVLETGLKPVEIH
>_0078.003009_ NP_827710.1 gi|29833076|ref|NP_827710.1| putative transferase [Streptomyces avermitilis MA-4680]
MHISFLIHNAYGIGGTIRTT
YNLANTLAEQHDVEIVSVFR
HREQPVFAPDPRVRVRHLVD
LREGAPDAGHPDLGRPARVF
PRAEGRYQQYSALSDRRIAG
HLASVEADVVVGTRPGLNVH
LARETRRGPLRVGQEHLTLD
SHSRALRATLRGAYPRLDAL
TTTTEADAHAYRGTMRLPGV
QVHAVPNPVPAPGIEPADGT
GKWVVAAGRLAPVKRYDLLI
KAFARVRAQRPDWRLRIYGG
GKQKDTLRALIDELGLYNHV
YLMGPANPIEPEWAKGSIAA
VTSSLESFGMTIVEAMRCGL
PVVSTDCPHGPGEIIDNGVD
GRLVEVGNVEAIAEGLLELI
NDDALRQRMSVAALKDSERF
DPSRIAERYESLFTGLAPRG
GATLGGKVRGSLHRTRGALL
GGAYAVRDVGRTALKKGRAA
>_0078.001157_ NP_824358.1 gi|29829724|ref|NP_824358.1| putative succinate dehydrogenase iron-sulfur protein [Streptomyces avermitilis MA-4680]
MTSYEARFKVWRGDVKGGGL
EDFEVEVNDGEVVLDIIHRL
QATQAPDLAVRWNCKAGKCG
SCSAEVNGRPRLMCMTRMSV
FTREETITVTPLRAFPVVRD
LVTDVGFNYAKAREVPAFVP
PAGLGPGEYRMQQEDVERPQ
EFRKCIECFLCQDTCHVVRD
HEENKPAFAGPRFLMRVAEL
DMHPLDAAADTGLDRKRTAQ
DDHGLGYCNITKCCTEVCPE
GIKITDNALIPLKERAVDRK
YDPLVWLGSKIGRRPRPS
>_0077.002569_ NP_370995.1 gi|15923461|ref|NP_370995.1| transcription activator of glutamate synthase operon [Staphylococcus aureus subsp. aureus Mu50]
MEIKQLRYFIEVAKREHISE
TALELNIAQSAISRQITLLE
QELNVSLFKKQGRNITLTSE
GKLLFNEALRIIEHLDSTIE
QFQSHGLTKNKSIYIGYDES
DVSHMLLPLIQTFHLQNDTH
VIPSLLDHDTIINSVLNGNI
DIGFTELTPEIRKHKQLHML
PLFEEHYHLYAPSDDPITMA
THPPLIQFEHSHIYCLAPFA
ETVKKQLRKITKSDVYTISS
QPLAQYLLRQKEGYIISSQN
IHLPESKSWIDIKLDHTELK
RTICAITKEPYTKSDIGILL
TLIQQLMTKTSTFH
>_0069.001715_ NP_895767.1 gi|33864207|ref|NP_895767.1| hypothetical protein PMT1942 [Prochlorococcus marinus str. MIT 9313]
MIDGDSSPLLRKQSPYPHWQ
YLHPESGDRLRIVPERGGLV
TDWCCNGHELLYLDQERFAD
PEKSIRGGIPVLFPICGNLP
GDLLPLPSGEFILKQHGFAR
DQPWELQLLEDHSGVKLSFV
DSEETRAAYPFSFLLEMVVR
PIRNALEIDVNVHNRSQSAM
PFSFGLHPYFKVTDLNKVRL
EGLPNSCLNHLQMAEAETAI
QLAALTEGVDFLTRPAGPVT
LVDEASGRSLQLQHENPMDL
TVVWTDPPRQMLCLEPWTGP
REALISGDRKLEIEAGGQQR
LRCSFSINLEKTVRAASC
>_0056.003335_ SARO_25NOV03_CONTIG30_REVISED_GENE3543 saro_25nov03_Contig30_revised_gene3543
MTGTTATRERRGKPSHRNDL
RSELLAAAYGFVVREGHEGL
SIRKLAEEIGVSPGAPYHHF
PDRRSLLIAVALEGYHQLFA
ETGKAVAASPEGLLFANLLH
FIRFAAANPNMFTLMYESEL
VRPQVAPELAEAQDIGFQML
RREVTRATQHLSEHERSLRI
ATIWSAIFGFALQTNRAMLR
AHPLEPMPDELAPEIVRQAL
RLMA
>_0055.003796_ RGEL_26JUN05_CONTIG562_REVISED_GENEMPEA3171 rgel_26jun05_Contig562_revised_geneMpeA3171
MSFDAMNTTLSLNTSAGSQA
LTVRDPWALVPSLGDLNAYI
AAVNRLPMLTLEEEQSLGQR
LRDEHDLEAAGRLVLSHLRL
VVSVSRQYLGYGLPHGDLIQ
EGNVGLMKAVKRFDPSQGVR
LVSYALHWIKAEIHEYVLRN
WRMVKLATTKAQRKLFFNLR
SMKQGFKGDATDSDLHRSTL
TDAEIDIVASELKVKREEVI
EMETRLSGGDVALDPQTDDG
DESYAPIAYLADDRHEPTRV
LDAQRRDALAGDGIGEALDV
LDARSRRIVEERWLKVNDNG
SGGMTLHELAAEYGVSAERI
RQIEVAAMKKMRKALAAYA
>_0054.001598_ NP_987907.1 gi|45358350|ref|NP_987907.1| Transcriptional regulator, MarR Family Member [Methanococcus maripaludis S2]
MEKIKNTCKIWEYIYTISRD
RLYQKIPKEEFLRLSTSDKE
YLEAIKNLNNPKISELARDM
GYTKTAVTTMVQKLEKNGYL
KKIKSKEDKREINVELTDKG
RYIFELKEEVYEYTIKRIKE
VLTPQELGAFKAILEKIAKE
FDQELGKIYEKNENIDKSDG
PPII
>_0053.003569_ MMAG_12JAN01_CONTIG3873_REVISED_GENE3588 mmag_12jan01_Contig3873_revised_gene3588
MSVKPPRKFFEPLAIGAPAP
YRELPVRLERMIHFFPPHNE
KMRAKAAEMGRNVDVLLGNL
EDAIPADAKEAARAGFVEVA
KAWDNPNTGLWTRVNCLNSP
WFLDDMNAIVGEAGNKVDVV
MLPKVEGPWDIHYLDQLLAQ
LEAKHGVKRPIMIHAILETA
LGVENVAAICQASPRMHGIS
LGPADLAASRGMKTTRVGGG
HPFYGVLEDSTEGKPGRTLF
QQDLWHYTVAKMVDACQSAG
IKAFYGPFGDFSDDAACEAQ
FRNAFLLGCAGGWSLHPKQI
DIAKKVFSPDVAEVLFAKKI
LEAMPDGTGAVMIDGKMQDD
ATWKQAKVIVDLAKAVAAKD
PAMAQAYGL
>_0053.001155_ MMAG_12JAN01_CONTIG3773_REVISED_GENE1166 mmag_12jan01_Contig3773_revised_gene1166
MIILAIETGMRRGEQLSMRW
ADIDLDRRVVHLSMTKNGSP
RDVPLSTLAVETLRGLYAAS
DRHPEVVFNVSPNAVRLAWN
RLRIRAGIPDINFHDLRHEG
VSRLFEKGFDMMEVATISGH
KTLSMLRRYTHLRAEDLAQR
LG
>_0046.002367_ NP_471832.1 gi|16801564|ref|NP_471832.1| hypothetical protein lin2502 [Listeria innocua Clip11262]
MMKHLTLWHTNDVHSHLEHW
PRIFNFLKEKRTAADKEYKA
ALFFDIGDFLDRVHPLTEGT
NGLANTDLLNQLPYDAVTFG
NNEGTTLAHEDLDNLYEHAA
FPVVCCNFYADKECTEQPDW
VKSIVYKEIEQVKIAIIGAT
APFREYYEEMGWGVEEPISA
IKKQIAGLDADTAVVILLSH
LGLPTDERIALELPEIDIIL
GGHTHHLLENGKIEGNALLA
AAGRWGEHVGKVTIELDENN
QIISKKAVTFATEKLPIPPN
ETAEIQAFFDKGREELSEKV
VAIPGKLAHNWFDDSEIAHI
LNEAVCEWTGSETFVMNAGI
FMTDFEAGIVTDFDIHQMLP
HPLNAIALTMSGEELEILID
GIYRKKAELQDIPLRGFGFR
GEYFGTVLMDRASFDSENQV
ALFDNKPIDKTREYRIATHD
TFVFAPFFPIVKQIKRKEVY
TPELLRDILKWKLKKMYGQE
EDT
>_0045.001334_ LBUL_20SEP02_SCAFFOLD7_REVISED_GENE1843 lbul_20sep02_Scaffold7_revised_gene1843
LKAIKYGVTREHIREFKVAL
TDGKVYKFGSKSVKSSSGYS
LNDLIIGSEGTLGVITEAVL
RLYPRPKHALNAIIPFPTLD
DAIESVPAILASGVEYMGRK
VLNLWEKYYDATFPIKEGDG
FIILGIDSFTASDAEAQLAQ
ALEAVKPFHALKETVLNAES
DEAKTIWDAREKLLLAIQKS
TPKMDEVDVSVPINKIPLVL
HRIEELEKEEDMRIPNFGHA
GDGNLHIYLCSDDMTDEEFA
KKGDNVISELYKTAKSVDGN
MSGEHGVGYARQNYYEDFYG
KDYTDLLRKVKGLFDPKGIL
NPDKIFPLD
>_0045.000043_ LBUL_20SEP02_SCAFFOLD107_REVISED_GENE200 lbul_20sep02_Scaffold107_revised_gene200
MVGIVLASHGGFADGIAESA
QMLFGPQDNFAHVILKPSEG
PEDIKGKMNEAIASFADQEE
VLFLVDLWGGTPFNQANGLL
DGHDKWAIVSGLNLPMVVEA
LTQRMINDKATAQDIATAII
KPAKDGIKTKPESLMPAEEK
AAAPAAAAGAPKEAIPEGTV
LGDGHIKIVGARIDSRLLHG
QVVTGWIPSLHPDRVIVVSD
KIAKDDLRKSMIREAAPAGT
VAHTVPLEKMKEIYEDPRFG
TTHAFLLFENPEDALQTIKN
GVDIKTLNVGSMSYSKGKVN
ANNVLSMDQTDVDTFRELEK
MGIKFDVRKVPSDNPENMDS
ILKKAQSLLDEQSSSEKRS
>_0043.002439_ JANN_22DEC04_CONTIG26_REVISED_GENE2440 jann_22dec04_Contig26_revised_gene2440
MAGEIPDLIAEARTGTGKGA
ARQARREGNVPGIVYGGGID
PLAINIPFNVLLKRLKDGRF
LSTLFNMKVEGQDDVRVICR
NVQRDVVKDLPTHVDFMRLK
RTSKIALFIPVEVIGEEECP
GLKKGGVLTMVRPEVELRVT
AGDIPEQITIDLTGLEIGDT
VTISSVELPAGAKATIDRDF
VIANLTAPSGLVSAESEEDE
DAPAADEVPATEVSEE
>_0043.000310_ JANN_22DEC04_CONTIG16_REVISED_GENE311 jann_22dec04_Contig16_revised_gene311
MLELLTLTRVTKSESTWIMK
KQKETSARASYHHGDLRAQL
IEATRHLVEEKGPDHLSVSE
ACRRAGVSTAAPYKHFRDKD
DLLRAVAFEGMERQHAQMLE
AIEPLPERDLARFSALGRVY
IGFAQTEPAVFRLMFGLSED
HADDEALVAKGRSTFGIVQT
EAAAFRGSDTVEDIDLRRAF
QLWSFVHGLAFLLIDGKLQQ
MDLPLDLEDMLDDIGRKVML
EE
>_0029.001283_ DGEO_15APR04_CONTIG109_REVISED_GENE1288 dgeo_15apr04_Contig109_revised_gene1288
MSSLFQRLLNPRPSAIGVEI
GTSTIKVVALRPGTPPVLQH
AVMVPTPIGSMRDGLVIEPQ
AVANELKNLLAEHRITARHA
VTAVPNQSAVTRNIMVPRME
RKDLQEAIKWEAERYLPYPI
DEVNLDFDLLDDPATIPEDG
QMEAVIAAAPSEAVARQVEV
LRLAGLEPIIVDLKSFAALR
ALRGNLLGEHLNKTTLAGLN
YTEAGEVALVLEIGASSSVI
SLVRGDRILMARNIAIAADD
FTTALQKAFDLDFSAAEEVK
LGYATAITPTEDEEALLDFD
RAREQYSPARVFEVIRPVLG
DLITEIRRSLEFYRVQSGDV
VIDRTFIAGGGAKLRGLANA
ISDALGFRVEVGSPWLTVQT
EQANADTGYLQANAPEFTVP
LGLALRGVQGHG
>_0018.003838_ BFUN_06OCT04_CONTIG481_REVISED_GENE3839 bfun_06oct04_Contig481_revised_gene3839
MSYWIQISNNVRYSNTFEPV
CQPGATREERSTTDPGGVGT
VPAIHGASNLNIIPIMRARR
ASITWPSEGLTRVPYALFQD
EGVYADEQDAIFRGPNWSYL
CLEAEVPNQGDFRSTFVGDA
PVVVTRDTDGEIYAFENRCA
HRGAMVCLEDQGNARDFSCV
YHAWTYSLQGDLVGVAFKDG
IDGKGGMKPDFCTGDHGLRK
LRVATLHGLVFGSFSDDVPP
LDEYLGEEIVERIARVLENR
KPVVLGRFTQMLPNNWKLYF
ENVKDSYHASILHLFFTTFQ
LNRLSQRGGIIVDPSGGHHV
SYSAVDHAAEAAAQRKATSD
YADQKIRSESEHRLEDTSVL
AGVDEFGDGVTLQILSVFPG
FVLQQIQNAIAVRQILPRGT
QQTELNWTYLGFEDDTPELR
EMRLRQSNLVGPAGYVSMED
GCVGGFVQRGIEGAGDGRSV
IEMGGDSAESSASRVTEASI
RGFWKAYRNAMGY
>_0017.004540_ NP_813500.1 gi|29349997|ref|NP_813500.1| putative 50S ribosomal protein L25 [Bacteroides thetaiotaomicron VPI-5482]
MKSIEVKGTARTIAERSSEQ
ARALKEIRKNGGVPCVLYGA
GEVVHFTVTNEGLRNLVYTP
HIYVVDLDIDGKKVNAILKD
IQFHPVKDNILHVDFYQIDE
AKPIVMEVPVQLEGLAEGVK
AGGKLALQMRKIKVKALYNV
IPEKLTVNVSHLGLGKTVKV
GELSFEGLELISAKEAVVCA
VKLTRAARGAAAAAGK
>_0016.000560_ YP_438228.1 gi|83717311|ref|YP_438228.1| cytochrome P450-related protein [Burkholderia thailandensis E264]
MNGLPPSLPRVDSTESLFAE
PLAFLAQARSRHGDVFVMRE
HGPIFSRASDCSGVIAVFGE
HRLRQILTDIDNFALPMSAA
AKMALPKNLVNLNRGLHSMR
EPEHGRHKRLLTGTINRELF
DAHRFEIRAALNRFCEMLKV
DRRISVVSRMRELTVEMASH
IFLGAQCQEDDELAFLLSAY
FTLRREASSLNARDPLLYRD
ELIGVGQQLDRTLRERIRRY
RKRPVDARAGLLQRLATAGP
PGSPALSEDEIVGHANVMFV
SSTEPVAMSLTWLLLVLSQL
PDLRRALRAEIADRASMPAS
TNGASWLENVVNETLRLLTP
NALMVRATTRAVSLQGVALP
ARCEIVVCPFLAHREAKPFP
DPHAFSPSRWETARPSPYEY
FPFGAGGHFCAGRNLALSLI
REVLSTLLSRFDFVLDGEQS
IDWRIHIMLMPKGDPALIAH
PVDERGDTPSPKWRGPITDL
FHFAPGLS
>_0013.002652_ NP_878940.1 gi|33591296|ref|NP_878940.1| putative thiolase [Bordetella pertussis]
MKAMAMTPKPTAAIVGMGDA
YASMQDRKDPIQLAVAATHK
ALADAGITKDQVDAVFTGRS
PWADKRSQWSNIFCSHMHMP
VTITSEITMHGAGLNATVAM
AAQMIAAGRAQYVLCLQSDA
TELFVDAVAMGAEADADPQF
EIPYGPTIPALYAQAACRYF
HEFGITEEDLADVAIANQSW
AMHHPHAAKARFGSIDRAKV
LSSPYVATPLRRWMCSTWGG
GTGGALVVTSVDNARTAQDP
VYVMGYGSATTHEYLGDRMN
MRRCRYPSLGAFPNLTHTAT
AEAARQAYESSGLTPADIDM
AQISVNFAHMGPLIMEDLGF
AAKGRGMDLYRAGRTGVDGD
LPIDTNGGWLSFGQPGISCN
MDSYAEAVRQLRGNALGRAP
ARRPRTVLVQGSGGMLAAGS
VTILASEL
>_0011.003497_ YP_106618.1 gi|53715871|ref|YP_106618.1| sigma-70 factor, putative [Burkholderia mallei ATCC 23344]
MQHARAAHDDPAYLAQLRHD
LLRFARLQLRDADAAEDAVQ
EALAAAWAQAERFDGQSSHK
TWVFGILRNKLIDTIRARRR
TINASALDAELDGEALLERE
LFADNGHWAPHAKPRPWPKP
ETILQQRQFWILFETCLEHL
PEQIGRVFMMREFLDFAIDD
ICTELELKANHCSVLLYRAR
TRLRTCLTEKGLTTEDATGE
M
>_0005.003671_ YP_322020.1 gi|75907724|ref|YP_322020.1| Protein of unknown function DUF820 [Anabaena variabilis ATCC 29413]
MQNTETTLQLRLWTVEEYHR
MAEAGIFGADERVELLEGKI
IWMIAKGTAHRSAVTRTDRL
LQNSLKDLALICVQDPVKLN
DRSEPEPDIAVVKIDPLDYA
DHHPTPSEVYLIIEVADSSL
KLDCVTKSQAYSQAGITDYW
VLDVINRQLHVFRQPTPQGY
ESKVVLAEDATIVPLEFPDL
QIAILDMLPPVKKS
>_0005.001618_ YP_323119.1 gi|75908823|ref|YP_323119.1| Protein of unknown function DUF820 [Anabaena variabilis ATCC 29413]
MLQDDKEILNSPSTPLTVMS
QTKDGVRWTIQDVAALPDNE
WIRYEIIDGELFVTRSPHHK
HQHVIGCIFSVLNSWSIDSG
LGEPSIMPGLIFSDSDNVAP
DVVWVSYERLAQIQDEAGHF
RGAPELVVEVLSLGKANEDR
DRLAKLKLYSVQGVQEYWIV
DRIAQRIEVYRRDYAQLKLA
TTLLVDDVITSPLLPNFTCE
VARLFVSRS
>_0004.003959_ 17742650 gi|17742650|gb|AAL44991.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (Dupont)] (gb|AE008689|:1320836-1321711, Atu4197
MVLMPSPETIFIESGPLSAR
FRSDWGGRMTHLVHAEMGDI
LAPTQADVFEPYNWPRAGAY
PLVPYHNRVYGASFVESGKT
HRLLPHPALTPDAMHGPAHR
RPWHVASAAEDRVTLQLNYE
ADDEWPFSFVAEQHFRLEPD
RLIVELSIINSSDASAPVSL
GWHPYLAVPLSSHAETDARL
EYPLDALNVPTGNEAHPRSS
RSIPAATGYTLHFRYWSTAT
VELDKGTLLLEADPIFEYLA
VHRMEKYLCLEPVSMAAGAL
CLPETERESRGLRTILPEGR
LSGRISLSIRG
>_0000.000457_ ADEH_23AUG04_CONTIG49_REVISED_GENE459 adeh_23aug04_Contig49_revised_gene459
VRIVLEIWRQRDPRADGRFV
RYEVTDVSEHMSFLEMLDVL
NQSLVRRGEMPVAFDSDCRE
GICGTCGFLVNGEAHGPLRN
ATICQTHMRHFHDGDVLRLE
PWRAAAFPVVRDLVVDRGAL
DRIVAAGGYVSVRTGGAPDA
NALPVPKTDADRAMEAAACI
GCGACVAACPNASAALFTGA
KITHLSLLPQGQPERPLRVR
SMAEQARAEGFGHCTSIGEC
AAVCPAGIQLEVIARMNRDF
LRAAFSRAAGEPLTVLPVTS
PMRRYESQPPGARETAEPAE
EPAKP
>_0120.003204_ YP_001304154.1 gi|150009411|ref|YP_001304154.1| glycosyltransferase family 9 [Parabacteroides distasonis ATCC 8503]
MANILVIRLSAIGDVAMTVP
VIYSAAKANPTDSFTVLTQA
FLIPVFINRPKNVNVIGINT
KSTEKTLAGLLRFASALVKY
DFDMVLDLHDVLRTMIIRTL
FRLNGRRVFVVDKARKDRAR
LTDAKHKRFKQLRPVIERYA
DVFRNAGLHYTESFTSLYET
STPDLSALEPLAGTKTGKWI
GIAPFAKHRGKIYPTGEMEL
VMAELSDREDFTIFLFGGRG
YEEALLDQWAFEYPRVKSVA
GKYSLDQELALISRLDLLIC
MDSANMHFASLVGTRVLSVW
GATHPYAGFYGYHQDPEDCI
QLDLPCRPCSVFGQKPCLRK
DWACMRQLNPDLIINKVLTS
LNEMVSDEGGH
>_0118.000120_ NP_267250.1 gi|15673076|ref|NP_267250.1| nucleotidase [Lactococcus lactis subsp. lactis Il1403]
MIMKLSILHINNTHLTLDKD
FSLINKIKEENKKRVIETLV
LGDGNSIFNNIEHKNDEQDL
LNTVPFDATTLGSHQFDEGS
KGIVENLNKINFPILAANVN
FEDDKLLNPLVKEGKFIPYL
LKNTTSGKKIGIFGLTTMDI
VYRSHPSAETIFFNPFDKAD
FIVKILKNLGVDVIILLSQL
GEEMNQMLAQQFLEIDIIID
KPVGTSGKKVEKCGNTLIIQ
SETDNYSLIESEINIDDEGN
LLFIQENNYV
>_0112.000734_ YP_909511.1 gi|119025666|ref|YP_909511.1| possible exopolyphosphatase-like protein [Bifidobacterium adolescentis ATCC 15703]
MKSVTVAGIDCGTNSIRLKV
SRVSEDGVEDIVPRILRVIR
LGQDVDKTHRFADEALARAY
EAAREFAGVLAEHPVDGIRF
VATSATRDAENREEFEDNIE
KILGVRPEVIPGTEEADLSF
LGATSIVHREVEAPYLVVDL
GGGSTELVLGGDGVTHPSTQ
VQAAFSMNIGSVRMTERHLK
NDPPTEGQIAEAVADIDAHI
DEAFKTVPAGKTHTIIGVSG
TVTTMTALAMGLTEYDHTAV
DGARCTLEDAYAVDNRFLHM
PREERLTYKTIHPGRVDVVG
GGALVWNRVLAKVSEAAYED
HGQRIDSFMASEHGLLDGIV
LDYGKRLLAAR
>_0091.003696_ SPUT_CN32_28JUL04_CONTIG70_REVISED_GENE3700 sput_cn32_28jul04_Contig70_revised_gene3700
MDEATANAKATEQAVRAAQA
RVVKATESLKYTVVSAPFSG
IVTERLVQLGESISPGQPLL
SGFSQHQMRAITHVPQRYIN
QLKDAPQFRVHLSDGREFTS
TDLTIFSFADPVSHSYQVRI
NLPKDEANLQPGVWAKATFK
NGEREKIQLPISALLTMNEL
SSVYLKQGNEFVLTQVRVTE
PVDGEVEVLAGLRSGDKVAV
DAYQVLLNKSSRPE
>_0086.000462_ ROSE_TM1040_30MAR04_CONTIG46_REVISED_GENE463 rose_tm1040_30mar04_Contig46_revised_gene463
MPGQNRATSRPRMLPARTHI
NRGQNNIGRVDVSEPASISA
GIADRYATAIFEIAAESNAL
DNLETSINDLAASLADSEDL
RTLITSPLVSREEQAAAISA
VADKMGLVDVLRNSLALMAA
KRRLFVVPALIDALRARIAE
ARGEVTAEVVSAKALTKTQS
EKLAKTLAERVGKKVTINAT
VDASIIGGLVVKVGSKMIDS
SIRSKLNSLQNAMKEVG
>_0084.002493_ SFRI_16AUG04_CONTIG85_REVISED_GENE2496 sfri_16aug04_Contig85_revised_gene2496
MDHRLKRHVDSMSSKSIVTT
DKKQAILHSALQLFVNKGFN
ATSTASIAKAAGVATGTLFH
HFPTKKDIMNQLFLSIKQEF
ATNMVSSTDFSGDIERDANT
LWQKAIDWAIAQPLKQLFFL
QYSMSADIDADVRKQAMNSI
LGFVVELITQGKQQQIIADI
PNALLLENCHGQYLAAIRFF
TDNPHLGDDEIHRKASFRLF
WQAMKA
>_0073.005860_ YP_299649.1 gi|73539282|ref|YP_299649.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134]
MDARLKQAVAVGRFGSFSKA
AEAVNVTQSAVTKSVAELER
RLGFPIFIRTSRGVVPTSEG
RAFLERASRLIADTDELLSG
ALRTDPFSGSLRIGIFPTTF
EWMLAKPLEVLVQRHPRLLL
DITSGTKERGVQLLDQGDVD
VAIGLESAFGDKARFKLEYI
ATISASIFVRRGHPLLELEA
PVASDIARYDMVLPGQLWDL
SLYPILSQIYGQAEAVRFHR
IENFSLQCKVIENTDAMGFV
DQAITRTDYFQSRFAVLQGL
ETATTAGIVCAVREQWTPKA
GVGALVDILQRVHAEGMLNS
DIQNRLFGHECAALAAEAVP
HRG
>_0066.001799_ NP_904416.1 gi|34539937|ref|NP_904416.1| efflux transporter, RND family, MFP subunit [Porphyromonas gingivalis W83]
MQVEEVAPASFNYVIKTSGQ
ILSAQGDEATIAATANGIVS
FAGSAFTEGASVRAGECIVR
ISAKNLPDGDPVTKAKIAYE
SAQKEHRRAEKLVKDQIISN
KEYEQTCRDYQTAKTIYEAQ
ASGTGAGGVSVASPMSGYIK
NRMVNQGEYVSVGQPIATVS
QNRRLQLRAEVSESHFKNVR
NVSGANFQTSYDNKLYELSD
LNGRLLSFGRASTQSSYIPV
TFEFDNVGDVVPGSFVTVYL
LSNTQEEVLSVPVSAITEEQ
GLHFVYLRLAEEEYQKQEVT
LGQSNGRRVRILSGLKAGDN
VVTHGVYQVKLAATSSVMPE
GHTH
>_0063.005128_ NP_249203.1 gi|15595709|ref|NP_249203.1| conserved hypothetical protein [Pseudomonas aeruginosa PA01]
MSACISPSDALLARRLIELT
QAGLPLVADPWAWIAAQLRL
SEAETLALLKRLRDAGVIRR
IAAVPNHYRLGYRHNGMTVW
DVADERIERLGRLVGGLSFV
SHCYRRPRHLPQWRYNLFAM
VHGRSEAEIEGYRQQIRLLL
GEDCRADEMLVSSRILKKTG
LRLAQKEERPC
>_0062.000714_ OOEN_16SEP02_SCAFFOLD27_REVISED_GENE1031 ooen_16sep02_Scaffold27_revised_gene1031
MKVLQYFENPGLISRSGIGH
AQRLQQEELSYTDIVLDTSP
FSKDYDLIDVNTYGPKSLAM
VAKARLQNRKVVYHAHSTYE
DFRNSFIGSNFLSKPFKKHL
IKAYRQADLIITPTPYAKSL
LRSYGLKQPIVPISNGVRVS
SYRRNKSKIIKFRQFLNLKE
NDKRKIIISVGLYFQRKGIM
DFVELARRNPEHLFVWFGYT
DLRIIPKKIRETVKKDHPDN
CVFAGYITGDVLQGAYSGAD
LFLYPSYEETEGIVVLEALA
SSQKVLVRDIPVYNDWLHDG
FDCYKASNLDEFDKRLNEIL
AGKVKNVSKAGHEVALKRDV
SLIGPQLKKAYEEALSLPSQ
ESR
>_0057.000284_ NP_841656.1 gi|30249586|ref|NP_841656.1| Sigma factor, ECF subfamily [Nitrosomonas europaea ATCC 19718]
MHSRDHQEDVAPAANPAMQQ
VHFLYSDHHNWLYGWLRFRL
GDAADLAHDTFVRLIARPRC
FDSSQEARAYLRTIANGLCI
DLWRHREIERAWLETLATQP
EAYAPSAEEQTAVLQALHEI
DGMLRHLPLKAARAFVLAMA
CGMTHQEVARELGVSSRMVG
HYITRAMLHCMQLEARNLGQ
AGAIAP
>_0053.001231_ MMAG_12JAN01_CONTIG3779_REVISED_GENE1242 mmag_12jan01_Contig3779_revised_gene1242
MPDLPKPETILVYVGLDAVG
DGLIKLPFLRALRAAFPTAR
ITWMSGKGPTVFQDILAPLV
TGLIDEILAFTRIGERPLEL
VGRRPLPDRSFDLIIDTQRR
GLTTLILKRIRHRRFISATA
GYLFSDGKPADTTRPASMIR
QLMQLVEAAAGQPVDADFPL
PRDPAIEAEADRLLPPGPRY
LGFAPGAGGRWKCWPLDRYI
ALAAAQKDAVPVFLLGPAEA
EDWAATIREALPQALLPLQD
TARLTPMLTIALGRRLAAAV
ANDSGTGHMLGAADIPLVSL
FGPTAADKFAPHTRRAAVLR
AQDFGGEDMEAIPQDAVEKA
LALLLL
>_0052.002199_ NP_106891.1 gi|13475327|ref|NP_106891.1| cytochrome P450 [Mesorhizobium loti]
MDMLLNPLDRRHRLRDDIPV
VPGAFPLVGHLPAIVCDLPR
LLRRAERTLGSHFWLDFGPA
GHLMTCVDPDAFALLRHKDV
SSALIEEIAPELLGGTLVAQ
DGGAHRQARDAIKAAFLPKG
LTQAGIGNLFAPVIQARVQA
WRDRGDVTILRETGDLMLKL
IFSLMGIPAQDLPGWHRKYR
QLLQLIVAPPVDLPGLPLRR
GRAARDWIDAQLRQFVRDAR
AHAARTGLINDMVSSFDRGD
DALSDDVLVANIRLLLLAGH
DTTASTMAWMVIELARQPGL
WDALVEEAQRVGAVPTRHAD
LAQCPVAEALFRETLRVHPA
TTLLPRRALQELQLGQRRIP
AGTPLCIPLLHFSTSALLHE
APDQFRLARWLQRTEPIRPV
DMLQFGTGPHVCIGYHLVWL
EMVQFCIALALTMHKAGVRP
RLLSAVEKGRRYFPTAHPSM
KIRIGFS
>_0044.001928_ LCAS_20SEP02_SCAFFOLD63_REVISED_GENE3530 lcas_20sep02_Scaffold63_revised_gene3530
MNYEIVIVGHGRYPDGVLSA
LQLLIGTTEGIKAFNLDEQT
THEKFEKQLTELLSEHERVL
VFADMTGGAPHQIVSRLVLE
GNQPHQYVISSAPLNLMLDL
YAKSLTGFEDDTIEGELQHT
LTLSKQLIEILPDRMNTNSA
TAPVPDMTHQDEGDGI
>_0043.000336_ JANN_22DEC04_CONTIG16_REVISED_GENE337 jann_22dec04_Contig16_revised_gene337
MVPGADGLLQSAGLHRLCGW
AAIDPNAEDPADRPKRPCRS
PHDGPANRSDRAPQETAGEL
MTRRQDYSGIAITAPFSMAY
QRYSIDTAHWWIAKALRGSL
DGAGLKPADIDGFSVASFTL
FPDSAVGLTQHLGLCPRWLD
HIPMGGASASVALRRAARAV
QAGDAHIVACVAGDTNHIDS
FRNMLSSFSRFAQDASYPYG
YGGPNANFALLTDRYMQEYG
ATREDFGRICVAQRANALRY
PNAVMKKPLSLEQYINARPI
ADPIALFDCVMPCAGSECFL
VMSEEEATRRNLPYATLGGA
IERHNAHAQDDVQLRGGWTM
DVDELYGMAGCTPDDIDLLQ
TYDDYPVISMMQMEDLGFCA
KGEGPDFVRHHDLTIDGDFP
HNTSGGQLSAGQAGAAGGYI
GMVEAVRQVTGTAGGTQVAD
ARTAMVSGFGMINYDRGVCT
SASILKTGGRA
>_0031.000376_ NP_293860.1 gi|15805173|ref|NP_293860.1| hypothetical protein [Deinococcus radiodurans]
MLDECRAEGFEVQPGDLGEN
VLTRGVDLLALPRGTRLHLG
PQAVVEVTGLRNPCAQIDAF
MPGLLRVMVQPRPGGPPALR
CGVMGIVLAGGEVRVGDDIR
AEWPAAPYHHLERV
>_0026.000204_ NP_662323.1 gi|21674258|ref|NP_662323.1| 6-pyruvoyl tetrahydrobiopterin synthase, putative [Chlorobium tepidum TLS]
MPSMIDLSGYPDSSVFYGKI
YVHFVNISVNTTLRDTMLIS
RKIEIDYGHTLPNSFTFCNQ
LHGHRGVIVATVEGPVIDRA
GDAEEGMVIDFKFLRQIMDE
HIHDQLDHGFAVWKEDKEDL
EFILKRNTRVLVTDAPPTAE
CLARWAFNQISGKLPEGVIL
KNLRWYETPNNWADYTGG
>_0023.002585_ NP_602052.1 gi|19554050|ref|NP_602052.1| predicted glycosyltransferase [Corynebacterium glutamicum ATCC 13032]
MKILLLCWRDTTHPQGGGSE
RYLERVGEFLADQGHEVVFR
TAGHTDAPRRSFRDGVRYSR
SGGKFSVYPKAWVAMMLGRV
GIGTFSKVDVVVDTQNGIPF
FGKFFSGKPTVLLTHHCHKE
QWPVVGRVLAKVGWLIESQI
APRAYKTAPYVTVSEPSAEE
LIALGVDQQRIHIVRNGVDP
VPLHTPKLDRDGQHAVTLSR
LVPHKQIEHAMDVVAALDGV
VLDVVGSGWWQEELVDYART
LGVSDRVVFHGQVAEDHKHA
LLERATIHLMPSRKEGWGLA
VTEAAQHGVPTIGYRSSGGL
RDSVVDGETGLLVDSKAELI
SATKTLLIDASLRSKLGASA
KQRAENYKWDTAGAQFEELL
LGLASKK
>_0008.002174_ NP_981289.1 gi|42784042|ref|NP_981289.1| transcriptional regulator, TetR family domain protein [Bacillus cereus ATCC 10987]
MTDSFIAEARREQIILACID
TLEEVGYNNLSLTKVAKKAK
ISTGLISYHFNDKLYLMNRT
LQFLVEKQHEFISNRVLLAQ
SEINKLEAFIEAHLAYQETH
CKNNIALIEIVFNARNEENI
PYYRIEDDEEDDALRTMLLN
ILKTGQQNGVFSNSFQADTL
ASFILGAIEERMLKANASIS
IENYSDELIKMVKKLTI
>_0005.000994_ YP_322044.1 gi|75907748|ref|YP_322044.1| Glycosyl transferase, group 1 [Anabaena variabilis ATCC 29413]
MNKLSIAYITFDIVPAPKGA
SIHIEAFSSALADVYKEIHL
LTVSPTVGLIESDQIHLNIK
QVMLPAVGNDFIQRVLYFRR
ELQGWLNNRRFDVIHIRSIY
EGLIIACNKKQYCDQMIFEV
NGLPSIELKYRYPAVANDDD
LLYKLYSQEQICLDAADLIV
TPSNVTAKYLQGRGISENKI
KVIPNGVDLDIFICKNTRQL
NINVGHLPYQMLYFGTLSPW
QGVNLAVEALGLLNRDFPAC
LTVIGQGRNHQIKTLKQLAY
KLGVADKLNILEPMSQKDLV
AHIHSSDVILAPLAANDRNL
VQGCCPLKILEGMATGTPVI
TSDIPVVQELGENGVHFLSV
KPGSAKAIKDAVLQLRNDGE
LGSQLAANARQRIEEYYTWQ
GAGKELIAAYQELLTID
>_0002.000078_ NP_148172.1 gi|14601632|ref|NP_148172.1| hypothetical protein [Aeropyrum pernix]
MGSIEISVEEPLLKLGVRLV
YRVFDGVSVGESPGELVEIL
RSVEDETKRLFRGPEALKDD
PRVKAYRRFLWRLGIDPTKV
RPSSEALARRVLRGSSIPLI
NNVVDAGNIASLKTLVPIGL
YDLDTVKPPLKLALSRGGEV
FEPIGGKHQSLPQGYPILVD
SRGLVMHIYPHRDSRVSMIT
SSTRRVLAVAAGVEGVGMDD
LRRAIEMLSELLERFAGGEP
LGPAVEVGG
>_0120.001774_ YP_001301821.1 gi|150007078|ref|YP_001301821.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503]
MRANVVKTVVNSVPHEGIDA
VGVERTIPENPLRRKSDQKH
WYIAIVNNKSEKLCRDKLEK
RIASQPEGEKDYEVYIASQK
EMCLLPSGKRKQVDRIVFRS
IVFIRCTDVLRRKEIVHLPY
IKRFMVNIAGERSGGIRPVA
FIPDEQMVKLRRMLDDSEEP
VIIDPRPLPLGARVRINGGK
LHGLEGNVLEVEDGNLNFVI
RVDLLGCAKVNITRDLLELL
>_0112.001624_ YP_909629.1 gi|119025784|ref|YP_909629.1| LysR-type transcriptional regulator [Bifidobacterium adolescentis ATCC 15703]
MLSEIGIIYLSDFNKDVIGK
LLREKHLEFHPLFRAPLHVF
ISRDNPLAGKKKVTMDDLKP
FPFIQYEQGEEGSFFFAEEA
VWPEYSPKQINVTDRATILN
FIIGLNGYTVCTGIDNGDLN
NEKIVTVPLDTDETMLVGWI
TNERAKLSKAAETYLEKLKS
VVASHGYTLID
>_0105.000612_ YP_056871.1 gi|50843644|ref|YP_056871.1| hypothetical protein PPA2209 [Propionibacterium acnes KPA171202]
MPEPMTPETFLDACTVDEAV
FELRPDYRALLLVVDGLTPP
ASGEGNNMVDTLIAQAEAHA
RNLLADSPVNELAHIASWRE
AFRGFGAKPQRTRNCLEALT
RRAEKGLPRVNALTDVYNAI
SVLHQIPLGGEDLHRYNGPA
RLIRATGQESFDTTANGEAV
IEHPEIGEVIWCDDAGVTCR
RWNWRQDRRTGLTDTTRTAL
FILDALAPVTDEELHATSDA
LIEALANLGENVQTTTRLIG
AQPSGN
>_0084.001754_ SFRI_16AUG04_CONTIG80_REVISED_GENE1756 sfri_16aug04_Contig80_revised_gene1756
MKTLINKRILPTSTAGSLPK
PSWLAEPETLWSAWKLQGEE
LIEGKQDALRLSLQDQQHAG
IDIVSDGEQTRQHFVTTFIE
HLNGVDFNKRKTVKIRDRYD
ASVPTVVGPVSRQKSVFVED
AKFLRQQTTQPIKWALPGPM
TMIDTLFDDHYKSREKLAWE
FAKILNQEAKELEAAGVDII
QFDEPAFNVFFDEVNDWGIA
CLERAIEGLKCETAVHICYG
YGIKANTDWKKTLGSEWRQY
EKAFPKLQQSNIDIISLECH
NSHVPIELLELIRGKKVMVG
AIDVASNTIETPEEVANTLR
KALQYVDADKLYPCTNCGMA
PLPHHVARGKLHALSAGADI
VRKELSAKGLLNLRD
>_0079.001596_ SBAL_17SEP04_CONTIG214_REVISED_GENE1598 sbal_17sep04_Contig214_revised_gene1598
MVIELSPNEITSMEPNIAFI
ANLIGDAARSRMLIALMGGE
ALTATELALEADITPQTASS
HLTKLVEGELLLVRKQGRHK
YFQLQSRQVAELLESLLNMS
AAIANPNVIHGPADPRLRLA
RICYDHLAGELGVALYDSLS
RQDLIVHEGGETKITAAGMT
FFAKRGVEHSLLGAPDDVFD
VPKSRQSRRPLCKSCLDWSE
RRSHLAGVLGQWVLKDILAK
GWAEKALDTRALQFSSRGLK
SFRADYGIESK
>_0077.002179_ NP_372835.1 gi|15925301|ref|NP_372835.1| similar to suppressor protein suhB [Staphylococcus aureus subsp. aureus Mu50]
MTDKTLQQIDKLICSWLKQI
DNVIPQLIMEMTTETKRHRF
DLVTNVDKQIQQQFQQFLAT
HFPEHQLLAEEKSNEMITNE
INHLWIMDPIDGTANLVKQQ
EDYCIILAYFYEGKPMLSYV
YDYPHKKLYKAIRGEGAFCN
GIKMEEPPSLKLEDAIISFN
AQVMNLDTVQDLFDASFSYR
LVGACGLDSMRVAKGQFGAH
INTNPKPWDIAAQFLFAELL
NLKMTTLDGKAIDHLKGAPF
IISNKACHETVLKILNANGG
YQKYR
>_0075.000322_ NP_689147.1 gi|22538296|ref|NP_689147.1| hypothetical protein SAG2162 [Streptococcus agalactiae 2603V/R]
MTKFIVDSSYWNLFPTSKIG
VILIKDYHMDRNLETELKQL
LSDSHSLAKKYLQEKEFSQN
RVIQTYRKAYQTFKTKKGAR
SSIEALLKRVNSGNEITSIN
PLVDIYNAASLRFGLPIGAE
DSDTFRGDLKLTITNGGDEF
YLIGEDFNRPTLSGELAYVD
DVGAVCRCFNWRDGKRTMIT
DNTQNAFLVIELIDNGREII
FKEALDFIATNTNRFLKAKT
QTIILDKEHSEITL
>_0073.003939_ YP_294978.1 gi|73540458|ref|YP_294978.1| regulatory protein, TetR [Ralstonia eutropha JMP134]
MATPGKTTATDHSAPRKDTE
APRWSRRKAARPQELVAAAL
DLFVERGFAATRLEDVAAAA
GVSKGTVYLYFANKEELFKT
VVRENLVPALARGTDLVDRF
EGTTPELLRELLRGWWGLIG
ATSVSGLTKLIMAESGNFPD
IARFYQEEVMVPGDELFTRV
LARGVERGEFRALPPNPTTT
LVCAPLVFLMLWQRSFGLYS
HKEIDPDAYLDNLLETLLFG
LTAGETRDRPLPPKSGPYIW
EKIRDEMTAQRLGQRTDDLD
TVAPAATAQQDKT
>_0069.000627_ NP_894016.1 gi|33862456|ref|NP_894016.1| inositol monophosphate family protein [Prochlorococcus marinus str. MIT 9313]
MSSGPLPESLGSLQLSAVHQ
LLDRVADRQRQDFGNIVSDF
KPDGSLITSCDRWSDAAIVA
GLAQIAEQEGVLSEEGSKCV
PDSPAYWVVDPLDGTTNFAA
GIPYWAISMARFVGGRPVEA
FLDVPSLNQRIVAIRGEGVW
RNGKRLTNETRSTGSACVSL
CSRSIRVLQRRADQPFPGKI
RLLGVASLNLVSVAMGQTVA
ALEATPKIWDLAAAWLVLNE
LNCPIQWLAADPAQLHPGQD
LTAADFPVLATGSHAEMQRL
RSWGEALLHG
>_0066.000911_ NP_905135.1 gi|34540656|ref|NP_905135.1| peptidase, M24 family [Porphyromonas gingivalis W83]
MIKLAPAALKADLQVRQERV
RIAMEEEGYDALLVTSNVNL
LYLFGSIYGGAAYLPAEGEP
IFFVRRPQVIEEGNVCPIRK
LEDIPALIQSRGGVLPRRIM
LENDESSYSDIKRQHSIFPN
AEYGNATALLRRLRMIKTPG
EIELFRRTAAIHGEVYACIP
SVFRPGMTDREFQVEIEHLM
RNYGSEGIFRTFGSAMEIHM
GNVIVGDNAESPSPYDFAMG
GGGTDALPLGADGSPMKEGM
CVMVDMAGNYSAYISDMTRS
YAIGKVPDEARRLHDLSREI
QAKVMETAEPGMSCADLYKR
SVEMAEEAGAADKFMGTKQQ
AKFVGHGIGLQINEMPVLMA
RSKEILTPGMVIAFEPKFVL
PGIGAVGNENSFLVTESGVE
KLTVCSEELIDLLAVAKQ
>_0065.000965_ NP_578620.1 gi|18977263|ref|NP_578620.1| sulfhydrogenase beta subunit [Pyrococcus furiosus DSM 3638]
MRYVKLPKENTYEFLERLKD
WGKLYAPVKISDKFYDFREI
DDVRKIEFHYNRTIMPPKKF
FFKPREKLFEFDISKPEYRE
VIEEVEPFIIFGVHACDIYG
LKILDTVYLDEFPDKYYKVR
REKGIIIGISCMPDEYCFCN
LRETDFADDGFDLFFHELPD
GWLVRVGTPTGHRLVDKNIK
LFEEVTDKDICAFRDFEKRR
QQAFKYHEDWGNLRYLLELE
MEHPMWDEEADKCLACGICN
TTCPTCRCYEVQDIVNLDGV
TGYRERRWDSCQFRSHGLVA
GGHNFRPTKKDRFRNRYLCK
NAYNEKLGLSYCVGCGRCTA
FCPANISFVGNLRRILGLEE
NKCPPTVSEEIPKRGFAYSS
NIRGDGV
>_0056.001645_ SARO_25NOV03_CONTIG28_REVISED_GENE1750 saro_25nov03_Contig28_revised_gene1750
MCRILGYLGTPVLLEDLLYA
PDSSLLNQTIGAQMLQMLNL
AGFGMAAWDPASHDPHLPFR
YRTTQVALFDRNLKALAGKL
RPGALLAHIRGVPYNSTVQI
NEQNCHPFRFEGVPLAMAHN
GDLAGFREMRFDLAPHVRPE
FARQIQGSTDSEWIYALAVS
ALDDPAGVNEPDAILAAIRR
ALSILRDARARHGITRSSST
NLMFCDGVNLVAVRFTFDFG
RFDAGKLQGTTEYLSMWYTF
GRDYGLHDGEWKLTGGAASA
DSVMVASEPLTRDFATWIEV
PEYSALIVRHEGARRRAEIH
ALEV
>_0056.000395_ SARO_25NOV03_CONTIG24_REVISED_GENE424 saro_25nov03_Contig24_revised_gene424
VKADANSTSGSGRRGRPSAE
STRLRMAHLLEVARGIFVRR
GYRATTMDEVAAAAGVTKRT
LYAWHSDKEALFRACVMLGA
ERFPRIEPQAGEDARAALER
YVLELHRELTCEDSYGMGAL
FLREAAEFPELAGSIQRGHF
DFMVEPLAAYLRGQGLEEEA
STERTMLFVAMALSPLHNAM
LVGMALPGTAGVAAHARRCV
SIFLDGSRLR
>_0051.000205_ NP_248444.1 gi|15669631|ref|NP_248444.1| conserved hypothetical protein [Methanococcus jannaschii]
MEGKAYALASGTIINAIATG
KGSAFGLDLKVYAKVKLIDD
GKNKIEGKVLDNPNIKPNLI
VRCVKNTLDYFGLNYSAYVE
TKTEIPIKSGLSSSSATSNA
VVLATFDALGEKIDDELILN
LGIKSSFDEKLTVTGAYDDA
TASYYGGITITDNIERKILK
RDKMRDDLNVLILIPNLEKN
VDVNRMKLIKDYVEIAFNEA
INGNYFKALFLNGILYASAL
NFPTNIAIDALDAGAITAGL
SGTGPSYIAMVEDENVEKVK
EKLNRYGKVILTKPNNDGAS
IY
>_0037.000327_ NP_952404.1 gi|39996453|ref|NP_952404.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA]
MSEEKNTAIDLKNLKAGGFI
KERGKDLFTVRLRVPGGRLP
VGRLKKIAEVAEKYGQGMVH
LSVRQSVELININFRDFDAV
VAELGEGTQKVASCGARVRV
PTACGGCEYNPNGLVDTQKS
ALEVDEKLFGIPTGHHKFKV
GFAGCPFDCPKSATNDVGFQ
GAVWPVLSADHCIGCGLCAK
SCTEDAIAMGDNGKPLFIPA
NCLYCGDCLKVCPTEAWRAG
KKGYTVRIGGKWGRRPLVGT
LFAEFLPEDQVVDFIAAVLG
WYQEKAEGQGRIRLGDVIRA
QGPEALLARLRERFPAFVVN
ATIAPQAIATQVGKEKQAHD
NR
>_0032.003345_ YP_010075.1 gi|46579267|ref|YP_010075.1| NirD protein, putative [Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough]
MTEAHNACCHPSGTAAGHHG
AGKASTDMMDAVDRRLLDII
QTGFPIEPRPYAVLGETLGI
TECEALARVRALRERKVIRR
LGANFDSWKLGFRSTLCAAK
VPEDRIDAFVAEVNRHVNVT
HNYLRNHEYNIWFTCICPSW
EQVCSLLDGITERTGIPILN
LPATKLYKIRVDFRMD
>_0030.000155_ DHAF_12NOV03_CONTIG1009_REVISED_GENE184 dhaf_12nov03_Contig1009_revised_gene184
MQDKDTTQSTFTQVFQPFFS
KDLWKKIDQEVPNLDQRNYK
LKTNQLTLLISHAQLQEYKA
LRKISSNVQSNDFSEAIGLE
SISHSQISRRLRTLPIKVSE
MLFKGVLNKVAQKKGDGKIQ
QRLGKLYMIDASVISLCLSR
FPWAVFRKIKAGVKMHLRLS
FDEMAIPDEVIITPAKTADR
KKLDELIVVDKDALTIFDRG
YIDYLLFDEYCEKEIRFVTR
LKNNAVIEFTGVERPVEEEG
SIEEDVDIILGTGTRKMKHT
LREVTIDDNVNEPFTILTND
FDLSAEELGEVYRYRWQIEL
FFKWLKQHAQIKHFYGTSEA
AVINQIRLDLMTYCTLILLK
LEVEHQRDLLTLQRMLIACL
YESYDEFLGKLRRRRRKGSK
RIKHDTIYQMTDHYIMAEED
TEWLNDLIYDPVIL
>_0028.000526_ DDES_06JUN05_CONTIG143_REVISED_GENEDDE0527 ddes_06jun05_Contig143_revised_geneDde0527
MAFISSGYNPEKPMEGRITD
IGPQHYAQFYPPVIARNKGK
WLYHEIIEPGVLVHVAESGE
KVYTVRVGAARLMSITHIRE
ICEIADKHCGGHLRFTTRNN
VEFMVETEEAMKALRDDLAS
RKFDGGSKKFPVGGTGAGIS
NIVHTQGWVHCHTPATDASG
PVKAIMDEVFEDFQSMRLPA
PVRISLACCINMCGAVHCSD
IGVVGIHRKPPMIDHAWTDQ
LCEIPLAVASCPTAAVRPTK
VELDGKKVNSIAIKNERCMY
CGNCYTMCPALPISDGEGDG
CVIMVGGKVSNRISMPKFSK
VVVAYIPNEAPRWPTLTNTI
KHIIEVYSENAMKYERLGDW
AERIGWERFFQLTGLEFTHH
LIDDFRDPAYYTWRQSTQFK
F
>_0024.003231_ CHUT_08NOV04_CONTIG199_REVISED_GENE730 chut_08nov04_Contig199_revised_gene730
VSEKEKVIIESIRSGANNIA
LEYLYDISLKKVRQYILKNN
GSKDDANDIFQDAVIVLFNQ
IRLNKFNEAYSIDAFIYSVA
RNLWIDKVRRDKKFTKYDSP
DDYAVIASDTNHLDALIQKE
KSAAMKTVFNLLDEKCRNIL
TYVIYEKRSMKEIKELMGYS
SEDVAKTNHYRCKQYLTKLV
KSNPSLVDLLRN
>_0019.001778_ NP_347198.1 gi|15893849|ref|NP_347198.1| Transcriptional regulator, MarR/EmrR family [Clostridium acetobutylicum]
MKNSNYEKQISELILETICK
FDERDSKERNFGTDVNIHHS
EIHMIKFIKENTDLHISAIA
RKLGITRGAVSQTIKRLQSK
GLITKEVDEGNNSKIVVRLT
GKGQTAYINHENYHKQYEIR
IKNILENMGAGSEKVVYDFL
LEFYRKI
>_0019.000163_ NP_149243.1 gi|15004783|ref|NP_149243.1| ThlR, HTH transcriptional regulator TetR/AcrR family [Clostridium acetobutylicum]
MAKTTKGEESKIKLIECAAK
LFLQKGYNGTGINDILSGTG
LPKGSFYFHFASKKDLAISV
SEYFEKKLLGWIKINSKDKK
WDEFIISLVGEMIKGAEKGK
HYGCPFAVLGLEIAFLDSDI
SKCYYKSIKELIDLFASIFE
HSGVPKDNIYILANRAFAIY
EGYLVYYRIGKDINTLKTMQ
EDLIKMYEDFKEVK
>_0018.001517_ BFUN_06OCT04_CONTIG481_REVISED_GENE1518 bfun_06oct04_Contig481_revised_gene1518
MTSPNTTQGAADPIQSYLNQ
GLRNYWYPVAPSWQVGDAPV
GITRLGDQIVLWRDKEGKVR
ALEDRCPHRGARLSLGWNLG
GSVACWYHGIEVDGGGTVTK
VPAVSNCPLEGQKCVKSYPV
EEHAGAIFLWFGDDAHKEPA
PLVLPEELVGEEYASFLCMS
HWKCNYQYAIDNVMDPMHGA
YLHATSHSMAEGDKQADMRV
RKTETGLMFEKIGQRDVNFD
WVELGETGCLWMRLAIPYKK
KFGPGGNFGIIGFAVPVDED
NCQVYFWRTRKVQGWQRDAW
RFMYRNRLEGLHWAVLEQDR
YVLESMAPNARDHEFLYQHD
VGMTRVRRMLRQRAQQHFAD
LDAHRAQAVSATPAAAEAGH
SHA
>_0017.003162_ NP_810934.1 gi|29347431|ref|NP_810934.1| conserved hypothetical protein, putative non-specific DNA-binding protein [Bacteroides thetaiotaomicron VPI-5482]
MPLIYKPYQANIANKAGQKL
YYPRLVKFSKMVNTQKMAEL
IAEKASLTPGDVHNVIRNLM
SVMREQLLNSRTVRLEGLGT
FTMIAKAGGKGVVLESKVSS
SQIVSLRCQFTPEYTRSADG
VTTRALTSGVEFVHVKDVAG
GFVDDDDKNHSGGGDNPGGG
STPGGDDDEAPDPTV
>_0011.003941_ YP_105792.1 gi|53716780|ref|YP_105792.1| 3,4-dihydroxyphenylacetate 2,3-dioxygenase [Burkholderia mallei ATCC 23344]
MGKLSLAAKITHVPSMYLSE
LPGRHHGCRAEAIRGHQAIG
ERCRALGVDTIVVADTHWLV
NAGYHVNCNGHFAGVYTSNE
LPHFIRDMRYEYPGNPALGH
LIAASANERGIGTRAHEIDS
LELEYGTLVPMRYMNADQRF
KVVSIAGWCMWHALDESRRF
GEALRHAIDASDANVAFLAS
GSLSHRFNDNGSPEEAIHMI
SREFYRQVDLRVVELWKQGD
FATFCKMLPEYNAHCHGEGG
MHDTAMLLGLLGWDRYDKPV
EIVTDYFASSGTGQINAIFP
LP
>_0011.002500_ YP_104477.1 gi|53724030|ref|YP_104477.1| transcriptional regulator, PadR family [Burkholderia mallei ATCC 23344]
MAQSASRYSPLALIVLAMLT
EAPMHAYRIQQLVKLRGKDE
VVNVKQRNSLYQTIERLQRD
ALIAVRETERDGAFPERTVY
EVTDAGRDTARMWLREQLAR
PAREYPSFPAALSVLPLLSV
EDARRQFEARVAALEAELAR
LDETQNAALAMQIPRLFLLD
GELMRVTLEAELDWVRSVIG
HLKVGALTWSEAWLREVAAR
FAQADSPDSADSD
>_0011.002192_ YP_104028.1 gi|53726151|ref|YP_104028.1| hypothetical protein BMA2482 [Burkholderia mallei ATCC 23344]
MTATHSRSTATDAVQTLQTR
TARRAAAAHRVSPGPQTSQI
ARGAGVTETAIATLSNDMLR
LDVAPHLGGGVTRFDWRGDG
ALTPIFRRCDAPGARTDPNE
LACYSLLPYSNRIGGGRFEC
DGRLVRVPRNRSAEPLPIHG
DGWLAHWQLDDATDTQLGLS
LDRSNGAPYAYRATQVYALD
GATLTIALGIENTGATRLPF
GLGVHPFIVRDASTELAAAA
SGLWLSTPDWLPSRHVGAPP
AWRFGIAYPLPDTLVNHAFT
GWGGGATIAWPQRRLGLTVT
ADADCYVLYTPPGEPFFCFE
PVDHPIDAVNLPGGGGAHGM
TLLAPGERLMRRFRFTVACT
DARAAPVARQSRRRAIA
>_0010.001085_ YP_034215.1 gi|49476174|ref|YP_034215.1| hypothetical protein BH15190 [Bartonella henselae str. Houston-1]
MTTFTILLNGDLFITDRLRN
QIRNSRVIAADGGMRHAEAL
NVVPELWLGDFDSSQQALKS
KYADIPREIFPPDKDMTDSA
LACERALQKGAEKLILCGAF
GGERSDHSLSHMTQALVMEE
KGISVLLTSGREEGWPLLPK
PFSCDLPDDSLFSIIGFSDL
KELTISGAKWPLYNKNVLFG
SSLTLSNRICGTFSCHLCSG
KAIVLASVPIS
>_0009.003662_ NP_244600.1 gi|15616295|ref|NP_244600.1| transcriptional regulator (TetR/AcrR family) [Bacillus halodurans]
MSTKDGQAKERILKAAEELF
QVKGYHQVTVREIARKAGCS
HTSIYVYYGEKRKLLELLAK
KPLNELREDVRQILTKSSVT
PSDRLVALAKRFVHFGLVHR
NLYEAFLHAEATRVDIPTTL
WELNDIRMQLFDMLKKAVAL
NHQPWNEERVVSLSRMLYYA
LHGMIMTYKDSDESIRSIER
RVLPIVEQTVHVFLKGAIQS
>_0005.003421_ YP_321560.1 gi|75907264|ref|YP_321560.1| Glycosyl transferase, group 1 [Anabaena variabilis ATCC 29413]
MKILHLSTYDNRGGAAIATY
RLHDGLQNIGITSQMLVQIK
FSDDKSVIATGNKIVHKYPK
LKPHLDSLPKLFFRHIDKSR
RTSYSLQWLPDSIATSIIKI
DTDIIHLHWISGGLINIETI
AKLNKPLVWTLHDMWAFTGG
CHYNQECQLYKENCGNCPQM
PKRFNIDLSSWVWERKAKAW
ADLNCTVVTPSHWLAKCAAS
SSLFKDCNIKVIPYGLDTEV
YKPYQKNLVRDKFNLPQDKL
LILFGAENAASNTRKGFHFL
RCALEILKHTYWHDKCELVI
FGASKSDSISNLGFNTHYLG
RLNNESTVAQVYSAADVFVA
PSIQDNLPNTVMESLACGTP
CVAFDIGGMPDMINHKQNGY
LSQPYNIDDLANGIIWVIED
KERHQKLCASSCATVKEKFT
LELQAKNYLSLYQNILKINN
>_0116.001262_ YP_194278.1 gi|58337693|ref|YP_194278.1| pyrazinamidase-nicotinamidase [Lactobacillus acidophilus NCFM]
MTNEALLIIDYTNDFVDDKG
ALTCGKPAQELDDTIANLAD
KFLKEDKWVIFPTDKHFKDN
PYHPETKLFPPHNLPNTWGR
ELYGKVGKWYEAHKDNNHVI
LMDKTRYSAFAGTSLDLLLR
ERKIDTLHLTGVCTDICVLH
TAMDAYNHCYNLVVHENGVA
SFDQNGHKWALNHFKTCLGA
KVVD
>_0111.000795_ YP_211664.1 gi|60681520|ref|YP_211664.1| putative TetR-family transcriptional regulator [Bacteroides fragilis NCTC 9343]
MYGNKIVFSGLENIKDCCKM
KITRDELLIAAFKLFMSVNY
EKASFAELGKMLGMSKAGIF
KYYKNKQELFIAVVDKFWFS
TQNPRNKFTETNGTFAEFID
EYVRGVQRTMDMLGDLIGAE
REKVAQGKFTYHAQYFHFLF
QLLQYDPDAKEKLRNLVEVD
YAYWRAAIQRAIATGELRED
VDVEDAVVMFRQVYMGLSFE
MAFMGGLNTQRLAKHLHAVY
SLLKR
>_0108.0000801_ YP_462394.1 gi|85860192|ref|YP_462394.1| asnC family transcription regulatory protein [Syntrophus aciditrophicus SB]
MEQRMRDRHGEQNLPTENQK
ERGERIVLTRDEQQILQALQ
GDIPLHSRPFAALGKRLNLS
EDTVIRIIQELADRGIIRKI
GAILRHRQAGFKQNAMVVWS
VPESRMEITGKILASFPEVS
HCYERTPSFEGKYNLFTMVH
LKYPDIANQVREMAQAADLD
DYQILVSETEYKKSSMVYFT
>_0106.001695_ SWOL_07JAN05_CONTIG134_REVISED_GENE1696 swol_07jan05_Contig134_revised_gene1696
MNAVPKDEMTPLERMAAFAA
GKPYDRIPCSSFSGETACHF
IGTTVSEYRHSAKLMARVET
VTYKMFGHDGAGVGPGFLAL
AEAMGTELKYPEDNIPFVAN
PVLKNWDDFDKLEPADPHKD
GKLPIYLEALAMIKDAIGDE
VPIGSSVGGPFTTAALVRGT
ENFLKDLRRNPEMAHRLLQL
VTNTTLNYIDAVMDMGCSVS
IGDPTASGSLLSVKQFREFA
KPYLSKLADRVIERTGKGPM
LHICGDSTPIWSDMADTGAP
TLSLDNVIDLAEAKKVVGER
VCIMGNVKPIDTIMKGSHQQ
IEAEVKECLRKAYDSPKGFI
LAVGCQVPLGTTADNFMCFM
NAARKYGRYPLNPDNFI
>_0096.001891_ SYN_PCC7942_21JUN05_CONTIG52_REVISED_GENESYN_PCC79421844 syn_PCC7942_21jun05_Contig52_revised_geneSyn_pcc79421844
MGREGWSRVLSATGENRERS
LQKFMTETLTQLGQMVGLPA
SPEVAVLETFDNPHPDRQYL
VRFVAPEFTSLCPLTGQPDF
AHLVLDYVPDQRLVESKSLK
LFLGSFRNHGAFHENCTLTI
AKRLEEAMNPTWLRLGGYWY
PRGGLPIDVFYQSGEPPAGV
WVPEQGVAPYRGRG
>_0078.007446_ NP_828660.1 gi|29834026|ref|NP_828660.1| putative N5,N10- methylenetetrahydromethanopterin reductase-related protein [Streptomyces avermitilis MA-4680]
MKFGVSTFLTDEGIGPAALG
PALEERGFDALLLAEHSHIP
VKRETPYPGGGELPRVYYRT
LDPFVALGAVASVTSELLLG
TGIALVVQRDPIHTAKEVAS
LDLVSGGRAVFGVGAGWNRE
EMRNHRTDPTERGRLMDERI
RAIIELWTKDEAEFHGDFVD
FAPVYSWPKPVQRPHPPIWV
GGGSERTFARVAEYGAAWMP
SGVPPKELGAQIERMRKTAG
DRPAVVVYAAQHDRESLDTY
AELGVERVLLYLPTQPEDET
LRTLDELAEAVSAYR
>_0075.001360_ NP_688407.1 gi|22537556|ref|NP_688407.1| glycosyl transferase, group 1 family protein [Streptococcus agalactiae 2603V/R]
MENKVKTVAVFSGYYLPFLG
GIERYTDKMTADLVKRGYRV
VIVTTNHGDLPIIDEDKGRK
IYRLPTKNIVKQRYPIINKN
REYNTLMKYVSDENIDFVIC
NTRFQLTTLEGLSFAKNHHL
PSIVLDHGSSHFSVNNRFLD
FFGAIYEHLLTARVKHYRPD
FYAVSKRSVEWLKHFNIEAK
GVIYNSVSESLGSDFAGTAY
LEKSADDIFITYAGRIIKEK
GIELLLEAFSMSQYSENVYL
QIAGDGPELAHLKEKYQSKQ
INFLGKLNFEQTMSLMAQTD
IFVYPSMYPEGLPTSILEAG
LLSSAIIATDRGGTVEVIDS
PELGIIMEENTQSLHESLDL
LVKDKALREKLQQNIAKRIK
EHFTWEKTVEKLDYIIQKN
>_0061.007261_ NPUN_22DEC03_PLASMIDD_REVISED_GENEPNPDF031 npun_22dec03_plasmidD_revised_genepNPDF031
MRLPPPTRLPNKHYRSREYL
TPSEVRSLLDAALDRKARYS
HRDYTLMLLMFRHGLRVGEA
VGAKCGLRWDAVMWGERQIF
ITREKGSDSGVHPLRDDELV
LLKELREMLPDSKYIFVSER
GEVMSTDAVRKLLGRLAAQA
GLDIKVHCHMMRHACGYYLV
NQGYNTREIQDFLGHRDIKH
TEKYTKLNARRFLNFDWGDL
>_0061.004192_ NPUN_22DEC03_CONTIG1_REVISED_GENENPR1866 npun_22dec03_Contig1_revised_geneNpR1866
MTKIEERGKVYLVGAGPGDV
AYLTVKAYNLLAAAQVLVYD
ALVDAQLLQCVPPNCLKLDV
GKRGGKPSTTQTEINKLLVK
YCQQGKQVVRLKSGDPLIFG
RCTSEIEALKASGCDFELIP
GISSALAAPLFAGIPLTDPV
LSRCFAVLTAHEPEVLDWEA
LSRLETLVILMGGQHLPEIV
HQLVQHGRSHLTPIAIIRWA
GTPRQKIWTAQLGNILEQTT
GLSLSPAVIVVGEVVGLHKY
LQPEKIDCQDSTTAQTPMLN
NLSASPEPLTGKTILVTRSV
GQSSTFSDRLTTLGATVIEM
PTLEIGPPSSWEALDDAIAH
LSQFDWLILTSSNGIDYFFE
RLIAQGKDTRALAGVKIAVV
GEKTANSLKQYSLQPDFIPP
NFVADSLIENFPEKLDGKKV
LFPRVESGGREILVKELTLK
GAKVIEVAAYQSCCPSSIPS
GAELALQNHNVNVITFASSK
TVQFFYQLTEKIFSQNSDVS
QLLENVCIASIGPQTSKTCH
DLFGRVDVEAQEYTLDGLTQ
ALIIWATNY
>_0055.000681_ RGEL_26JUN05_CONTIG562_REVISED_GENEMPEA0050 rgel_26jun05_Contig562_revised_geneMpeA0050
VSPRKPGTQVPAAVTDNTAM
APSTADTAATVRNEQLHQHG
ALVRRIAKRMRARLPANVEM
DELLQAGLIGLNEAITRFEE
SFGASFDTYASRRIEGAMLD
SLRAADTLSRDARAHQRAIR
AAVQALEHRLLRPPRAMEVA
SELGWSLARLHQRLVEAGAA
GQRAGDAPLDGLADEASARG
AEDDLHATADDHADPLAALQ
RRQRTTALNAAFDTLEEREQ
LMMKMIYERGLDHQDAAESL
GVSPSRVSQMHAVVVQKLKR
RLKDW
>_0054.000139_ NP_988347.1 gi|45358790|ref|NP_988347.1| precorrin-6B methylase [Methanococcus maripaludis S2]
MVFLKNFFERLIVFKSYIKY
HFNIVSLKTCSKNYKWDTVI
YIVGIGPGSRDYVTEKAFDT
VETSDFVLGSKRSLEIFEIN
GKRMELTLNLKNELYDFLKN
YKNSNSKEKVSILSTGDPCF
SGLLKTIFSFDFIDQNDFEV
IPGISSIQMAAAKAKISWED
YNILTIHGKEENLKKLLDFV
KNDEKVIFLPNNLKNDIKFL
IENGISDEKEITVLENLSYS
NERIITNKISNLVKNDYSYL
LVCIIN
>_0052.006578_ NP_108646.1 gi|13477075|ref|NP_108646.1| similar to actin interacting protein [Mesorhizobium loti]
MTIHGISPDVLAALEHVLGQ
SGVAADTADMAKYLVDWSGD
HHGGALAVLKPASVAEVQAA
VRLCGTLGLAMIPQGGNTGL
VAGAIDIGTAGGAVVISLER
LNRIRSVDADNFILQADAGC
ILQHIKDAADERDCLFPLAL
GAQGSCQIGGNAASNAGGVN
VLRYGMARDLIVGLEAVLPD
GELWNGFSGLRKDNRGYDLK
QLFIGAEGTLGIITGVEMKL
FPKPGRVETAYLGLPSFEAA
ISLFRRARRQCCDLISAFEI
IGAECMELARLADPNIVTPV
TGPVHVLIELSSSAEIDLRA
LLMNFLADTMEEEIVTDAVL
AESGAQARAFWGIREGLVEG
QAKRGYHVRTDLSVRISDIP
TLIAQARQFIELQHPGWISQ
AYGHAGDGNIHFNVLPPLDL
ADPDARARGATITTGLYDIT
NALGGSISAEHGIGRTRQRV
YWAGMSAVQRRLVSTLKDAL
DPGGLMNPGCLFPATETFS
>_0050.001968_ MFLA_01DEC03_CONTIG130_REVISED_GENE2186 mfla_01dec03_Contig130_revised_gene2186
MRYWPWLEHVEKPLPDHPLH
LPTIVNEHRPKVARRERGET
QAANILSVALDLFAKHHVAS
VTTKQIAAASKVNSALLYYY
FKNKDDLFRQAVDHAIGQVL
LRFEHVQKTAHGPAEILSAW
LNLHLQQVELIRKFVKVAVD
YASSESRTAETDATISRFYD
TERRMLCQVLQEGIETGDFA
QVDVEQTATFISTFLDGIVI
RSIVLEGFNYAQSVQDLRTF
LSHELQVSIQESTSFPME
>_0043.002916_ JANN_22DEC04_CONTIG27_REVISED_GENE2917 jann_22dec04_Contig27_revised_gene2917
MANPFTPQTMISTTHSCPSG
GTFGCNWSAIGCLREDMMFE
DRITTFRTRIDEAGIDVALI
TDDDAVYYLTGYYDYLHMEF
GRPTILVVPSDGPSLLITPT
IDLNTAQANARVDRIAPWND
GMGDEWRAELPWALKGCASV
GIEPDHMPPLVRAYVDDLVP
RDRQTSATPILSTMRMIKSD
GELQLARHAGQVANAMMAAG
RAAIADGVPEFEVALATSQA
GTRKAAKLLAAHYHDADMSP
NTHFLQIMASGTEITKTHHR
ASTRVMRRGEPVFLCFCGMT
NFHRFKLGFDRTFWIGEAPD
DHVAVYEVALASQAAALAAL
RPGVSAESVHAAYAEVIEGA
GHAYPFRCGRATGFSFLEAP
QLVTGDTTILQPGMVLAVDG
SVAVEDFRAQIGDSVIITED
GYEPLTDHPKQISDIILA
>_0043.002087_ JANN_22DEC04_CONTIG25_REVISED_GENE2088 jann_22dec04_Contig25_revised_gene2088
MCRWAAYLGQAIYLEELLTA
PGHSLIDQSRAATECKTAIN
ADGFGVAWYGDRPDPGLYRD
VFPAWSDPNLASLARTLKSH
AFLSHVRASTGAATSRNNCH
PFAHGRWSFMHNGQIGGFDR
FRRRADMGVSDPLYAHRKGA
TDSELLFLYALDFGLEADPI
GAVLLAHRRLEQMSRETGTT
PHLRSSAAWSDGTRLYALRL
SSDHIAPSVYYRWSKSRTGW
AVVSEPLEVGQGGWTELPPG
HSAMFEGAQVWVEPVAAMAA
>_0039.001102_ NP_874109.1 gi|33152756|ref|NP_874109.1| possible uroporphyrinogen III synthase [Haemophilus ducreyi 35000HP]
MNVLITYPASRAQKLVDMCQ
QHRIFAIYQPIFSVELGADL
LDLPSAMSRLNAGDNVIILS
KEAFDFAWQTLADTGFAYRA
DLNYFVADKYLAAYVTAKTT
RPVHYPDTEQCNQLLQLGKL
LQLTDKKVLILCAEEQRGLF
QNQLAEAKQVQYLACYYHKH
IEQLTAQLSLAKRAGIDTIL
IENEDVLLTLYEQIAAEDCQ
WLVKTRLVVISQHIANIAEK
LGWQSDQVIIAGQTDNQTLL
NTMLTFINKAN
>_0038.000905_ NP_279693.1 gi|15789869|ref|NP_279693.1| farnesyl-diphosphate farnesyltransferase; FdfT [Halobacterium sp. NRC-1]
MLCRSALYCWHPGTPSRGAM
IAVGDGSTPQPLLYSPTLAR
PRVMDGRQSHQPTASDREWC
HSAVQDVSRTFALTIDALEE
PMATRICVGYLLCRVADTVE
DATAMPPTEQAQLLETYDAA
LDPDCGTTVAEFQAAVGDHV
PSEPNADWRVVANTTRVVSA
FESLDDAAKAAIRPTVREMA
TGMASFVQRYADAGGLRIQS
PTELEEYCWYVAGTVGELVT
ELLARDAPSDAAAAMRENAR
SFALLLQLVNVAKDVRPDYE
EENNVYLPQEWLDDHDLAPE
DVADPEHAGRVASVVERVTD
RARGYVADAQRWLEVMPTSQ
GNTLAAWAVPFLLAVGTMRE
LGNRPADVVREGDVKVDREE
VHAVIGLVADDFDRSAIDSV
RERIATESLS
>_0036.001110_ EXIG_01APR05_CONTIG277_REVISED_GENE1111 exig_01apr05_Contig277_revised_gene1111
MNLSISCTEKGRLIYALVSV
NKTIAQKFDLCTDGFSQTRM
DLLAQLEVDTTISQKELQQR
VNVDNAAVTRHLKHLETKGM
IERVRSATDNRVILVSLTAE
GATRITRLRQQKDEFLEQLL
EGFTADEQHQLTQMIQRIET
NALTLPKTTVT
>_0032.003220_ YP_009868.1 gi|46579060|ref|YP_009868.1| precorrin-2 C20-methyltransferase [Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough]
MQPGTLYGIGVGPGAPDLLT
LRAVSTLARVDVVFAAASSR
NDYSVALDIARPHLRHDVTI
ERLDFPMTRDQSVLTAAWKA
NADAVEAVLRTGRNAAFLTL
GDPLIYSTFGYLLRTLTALA
PDLPVEVIPGVTSYQAAAAK
TRTILCESGENLLLLAGIQD
AARLDTALTRADNAVILKAY
RNFSSIRTMLASHEATRDTV
FVSRLGMEGEVVARDLHAAP
EHPHYLSLLLVTDRKHGNPE
HTAESTSDAEADETAD
>_0025.001246_ NP_281436.1 gi|15791613|ref|NP_281436.1| putative iron-binding protein [Campylobacter jejuni]
MTYNEKIISMNNDLLDHQHK
ELFEISKKLSLMNQRHVGTK
ELKIVLRELLIMINRHFSDE
EAFMREIEYPYINHHTRIHR
KIILEIEEIIISEAKFVNIM
TEKLNLVVQDFIFKHTAKED
SKIVKYYEEKFKK
>_0019.000180_ NP_347512.1 gi|15894163|ref|NP_347512.1| Transcriptional regulator, MarR/EmrR family [Clostridium acetobutylicum]
MGNDQIDEIVNDIFYVMPAF
AKTMFGLLESTFYHCELSNS
SIRVLFALNNHKKITITDLG
KVLCAHKPNVTSWVDCLVKN
DLACRLYDDNDRRIIYISLT
ENGKLTIDKCKEVLNKSFAE
RLAHLNDEDLELLIQTLNNM
SMLLNKINGHS
>_0018.007663_ BFUN_06OCT04_CONTIG482_REVISED_GENE7664 bfun_06oct04_Contig482_revised_gene7664
MKNERGQNLLKRVDLVVGGA
LLSLLGMFRRKRRPPAECTT
AGIFAFAAIGDSILSSIIIS
ELRKVRNISKVVVFASRSNA
RIYDLFDGLDEVVVVPLTSP
LNALREIRKHDVDVLIDTSQ
WPRISAILAAFMKAKFTVGF
KTRRQFRHYAYDACVEHRDD
IHELDNFRRLLRPLGIESTE
TPQIGKSIRPSGLPFVMDDR
YIVFHPWASGTNFAMREWPA
EYWQKFARMLIGSGYAIVIT
GGPEDAARAQQLVDLIGSSK
VVSVAAKVSLAEVVGIVRRA
DCIVCVNTGIMHLSAMLDTP
MISLHGPTNPFRWGPVSKER
GVLAVSRQDGGMFLNLGFEY
PKDAKYVMDKISVASVADVL
SEVYSINLGRHDKKPAGEAF
AP
>_0016.004739_ YP_442946.1 gi|83719522|ref|YP_442946.1| syringomycin biosynthesis enzyme, putative [Burkholderia thailandensis E264]
MGRTRRDPARAPFASFVSPE
QKDFRMTQLSMPAAAARPTL
DDLRVEPGLPTVVSPREGAD
IALHEAAPLLREIANDVVER
AGGVLFTGFRVASIETFQRF
AADFGDPLIGYEFASTPRSQ
VEGAVYTSTEYPPHRSIPLH
NEQSYTREWPMRIWFHCALA
ARTGGATPIADSRAVYRALD
PALAARFAERELLYVRNFGQ
GLDLPWQQAFGADDPREVER
ICAARGIDCEWREGDDGEPL
LRTRERCQAVARHPRTGELV
WFNQANLFHLSTLDEDMQEA
LVDAVGIENVPRNVYYGDGA
PLEPDALAEIRAVLDGQRIV
FPWRTGDVLMLDNMLSAHAR
DPFEGPRKVVVAMARSHRET
GGA
>_0005.001025_ YP_322096.1 gi|75907800|ref|YP_322096.1| Isochorismatase hydrolase [Anabaena variabilis ATCC 29413]
MDQSLRTLGVAPNAWMVNQA
IADITRPQKTPQPVILSTET
KTLRLDLAKTAIIVIDMQND
FCHPDGWLAHIGVDVTPAAK
PIVPLNNLLPELRAVGVPVI
WLNWGNRPDLLNISANLLHV
YNPTGEGVGLGDRLPKNDAR
VLMAGSWAAAVVDELQQLPQ
DICVDKYRMSGFWDTPLDSI
LKNLGITTILFAGVNADQCV
LTTLCDANFLGYDCILVKDC
TATTSPDYCWLATLYNVKQC
FGFVSDSQAIFTALNHPEAT
GRDK
>_0120.001268_ YP_001304494.1 gi|150009751|ref|YP_001304494.1| glycosyltransferase family 4 [Parabacteroides distasonis ATCC 8503]
MIQIILVNEESRASQYGIGT
YIKQLCLILSQKQGIHLSVI
CCRSTKNDFYIERKGDIDYY
HIPDTIQNNDPEIRIKTYYK
NIWYLIFPYFSSHSKENIIL
HINYYQHIHLLNTFRAFFSK
GRCCFTIHYMDWCFKIKGNY
SYLKSILYKELDSIKNPLEK
NIKEICEKEKNVFEQVDKII
CLSNSTQNLLSKIYDLPINK
FCILYNGLKDESILLNSDKR
LNLKKNFLFSKEEKIILFVG
RLDEIKGLGELIFTFKKLLQ
IDPYCHLVIVGDGFYSYYLN
SCNPTWNKITFTGKLNKEDL
YKLYQIADIGVLPSFHEQCS
YVAIEMMMYGIPLVASTSTG
LSEMIEDGVSGYHIPIIEYE
NHTDLNTYELQSKLLILLKD
SSMRKEMAKNSRLRYERYYT
SEIFSSCMQEFYNRFVL
>_0118.000557_ NP_266393.1 gi|15672219|ref|NP_266393.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403]
MKKTSQEKLYEAALELITAQ
GYENTTVLQIATKAGLTERT
FFRKFKNKADIFFAGGEQYS
QMLLTKMKESKANNPLAIVL
ESYFYAADFFDEHRERTVKR
QKIIASHPDLEERELLKQSK
IEELLVEYLLTAYGERSARL
AVRLARAVYSVAWEEWLEND
ADSLHHLLEKAIADFNELKN
Y
>_0113.002264_ YP_001088596.1 gi|126699699|ref|YP_001088596.1| probable amidohydrolase [Clostridium difficile 630]
MRGEIRMMDILIKNAIIVTV
NKEREVIFDGALVVKDNKIA
DIGNSKEIESKYTDVKKIID
AKGKVLFPGFINTHNHLFQT
LLKGLGDDMVLKDWLETMTF
PAANYLEPKDTYDAAMLGCI
EGLRSGITTMVDYMYPHSKP
GLCDGIIDAYKELGIRGILG
RGCMNTGAQFGVHPGIMQDV
ETVEKDVRRLFEKHHNTENG
RIKIGVAPAAIWSNSQEMLE
MLWRVVKEYDDALFTVHISE
TPFDREAAKELHGQYDIDVL
EKLGILGPNVLMVHCVYLTE
KDMELTKKYDMKVSHNTASN
MYLSSGVAPVPEMLKKGITV
SLGVDGAASNNSQDMLELMK
LTALQHKVNKCDPLAMSAEK
VLELATIDGARAIGMEDEIG
SLEIGKKADLLIFNPMLSPK
AIPMHNPVSTLVYSSSMKNI
ESVIVDGNIIMEDSKILTAN
EEKALKDAQDTAERLCVRGT
IKNRMEGHKWNSLY
>_0108.0003161_ YP_461003.1 gi|85858801|ref|YP_461003.1| cell division inhibitor [Syntrophus aciditrophicus SB]
MMQKPKVGQDVPEPSAGGMF
QRDAMSPSVAHKPVLELKGN
LLSLMVLYLFDSDRNLIEQQ
FTEKISGAKNFFKNAPIVID
LHALQNTSVPVDLSHLSDLF
RKHGLVPVGVRGGNVQQQQA
ALNLSLGILPDAKPASSRGE
PQTEVAVQATRDKVFTQPVR
SGQQVAALQGDLVVLAAVNP
GAEILAGKNIHVYGPLRGRA
IAGVHGYSEARIFCRYFDAE
LVAVAGQYMLNEDFEDSVRG
KPVHIFLENDRLKIQPFEI
>_0104.000883_ NP_637720.1 gi|21231803|ref|NP_637720.1| transcriptional regulator tetR/acrR family [Xanthomonas campestris pv. campestris str. ATCC 33913]
MTPRSPRAARRSDCDRRIHA
AVHALLAERGMRVSMTAVAE
RAGCSKQTLYSHYGCKENLL
RDVLQEHVQLATVPLGTATG
DLREDLLAFALAHLDRLNRP
DVLQTCRLVEAESHRFPGQS
QQIFHEGVVGMQERLASRFA
QAIDAGQLRHDDPHFMAELL
LSMIVGLDFDRQRFQVPHRA
GLPARQQWAQFAVDTFMRAF
AAVVTPPRTPARSFLTSRP
>_0095.004434_ NP_490521.1 gi|17233417|ref|NP_490521.1| resolvase [Salmonella typhimurium LT2]
MSQPPLPAVCTQAASALLPV
AIDYPAALALRQMAMQHDDY
PKYLLAPEVSALLHYVPDLH
RRMLLATLWNTGARINEALA
LTRGDFSLAPPYPFVQLATL
KQRAEKAARTAGRMPSGSQP
HRLVPLSDNQYVSELQMMVA
TLKIPLERRNRRTGRTEKAR
LWEITDRTVRTWIGEAVEAA
AADDVTFSVPVTPHTFRHSY
AMHMLYAGIPLKVLQALMGH
KSVSSTEVYTKVFALDVAAR
HRVQFQMPGADAVAMLKGGS
>_0093.000304_ NP_341740.1 gi|15897135|ref|NP_341740.1| Uroporphyrinogen III synthase, putative [Sulfolobus solfataricus]
MRVLFLRPDNEDNELNEKLM
ILRKNGIEVLNIPIFKIKCV
SYSLPTYDYEALAFTSRNSV
ICFKDRTLIKNVHKIYAIGE
ETAELLMKMYNVNPITPERF
TSIELAKRILEDKVNSILSI
RSRKASEDMRNILNGKIKYD
EIYVYDSEIIRDNINEISKI
LTECEVDAIAFTSSLMAKLI
GPFIRGKCNIIIFSIGPMTT
ETLKRVNNKVKIIESKTHSI
KGIIETILVEMKRNGRD
>_0091.000039_ SPUT_CN32_28JUL04_CONTIG102_REVISED_GENE40 sput_cn32_28jul04_Contig102_revised_gene40
MTTFSVVESGETTFIREQAF
GGELFTQSILSFYGMSYEQA
EKAKIEGDLPRNYMFEVLSP
FQTQLLQQVKRTLQIYCTSS
GRDKVDYLVLCGGTSKLEGM
ANLLINELGVHTIIADPFQG
CLHADESIKHILQPNISKYM
VACGLALRSYGQWRT
>_0085.002653_ SHEW_20DEC04_CONTIG154_REVISED_GENE2655 shew_20dec04_Contig154_revised_gene2655
MLKKVSRLDYYTLQVFIGLV
ELKSGSAVAERLRTTQSKVS
RSLTCLREVLEDELFIRQQY
GFEPNQVALTIYPMVKTIVE
QYDKIVAATIDKGAEPYQLC
VATYEQWSLMAMNCVHNTCH
CIEGGVSINIQPWTDKVNQR
LCQGKVDCSISTEPINHPMV
NNFKLGDITHFFIVARRDHP
ILTSDDPLAQMFNYHIALVN
THLQEQEPHPIELYAKARQI
EIRVALKSPSLRMLVDHVSH
SEDIALLSSAMSMSYFENRD
DVDYLDISRIWLQTRDLETE
SYYLHCHKGIKPELANCLRR
VLTEKLIEMQAHCDQVAQER
TPLAQPSIAPEPSA
>_0078.007005_ NP_827747.1 gi|29833113|ref|NP_827747.1| putative polysaccharide deacetylase [Streptomyces avermitilis MA-4680]
MREPAVPILMYHSIATAPND
ATRALSVAPEAFAEQMALLG
DLKITPVSTAQLAESWRSGG
PLPERPVLITFDDGYEGVHR
HALPVLAEHGFASTLFVSTG
WIRGAYDTGGGLDTMLDWDQ
VRELADAQVEIGGHSHTHPQ
LDEIDDDALRFELLRCKEIV
ADELGARPVSFAYPYGYSSR
RVREAVREAGFAQSLAVGNA
LARRRQGPYALRRVTVRRST
GVEEFTRLVEGRAIALDFAR
DRALTKGYAMVRRARQVRRK
AIRSRV
>_0078.004195_ NP_822892.1 gi|29828258|ref|NP_822892.1| putative LysR-family transcriptional regulator [Streptomyces avermitilis MA-4680]
MDLTPTLPRGGTADRGPLTP
HRPSTTPFCDRSPRARVALE
SLSSADITDGLTEFELDAAM
TYLDDDTLRHVRRFPLYEER
YVLLTPVDGPLAAQPTARWA
QAAALPLCLLGPRMRNRRII
DECFAADGATATPAIESDSV
AGLYAQLPGGRWSSVISHAW
LHMFGVPEGMGVVPLEGPAR
GPRVGLVVARSEPRSALAEA
LLTVAREADVRDALDSLLHT
YLGGGHG
>_0067.000611_ NP_142471.1 gi|14590405|ref|NP_142471.1| hypothetical protein [Pyrococcus horikoshii]
MVVNMFEDIDTFEEAFNKLL
REVLEFDLQNPFKDAKKVLC
IEPHPDDCVIGMGGTIKKLS
DMGVEVIYVCMTDGYMGTTD
ESLSGHELAAIRRKEEEESA
RLLGVKKIYWLNYRDTELPY
SREVRKDLTKILRKEQPDGV
FAPDPWLPYESHPDHRRTGF
LAIESVAFSQLPNFSNTDLD
IGLNPYNSGSFIALYYTHKP
NYIVDITDLMELKLKAIRVH
RSQFPDDIWEKWEPFLRTIA
MFYGEKIGVRYGEGFRIMPG
LFYHITPFTDLI
>_0063.005062_ NP_253691.1 gi|15600197|ref|NP_253691.1| probable glycosyl transferase [Pseudomonas aeruginosa PA01]
MTRSAEPRVLQFCHGYDGPF
LDCARQYASLFAGTPYKVTT
VFLTGRSDPEVAARCASDEV
LFLEYGSRDIRGLKLKAIRD
LREIARSRDFRFCIAHRFKP
IWIASLATRLPIVGVHHAFG
DYQRLSRKVFAGLMSKRLSL
LAVSDAVRDDIRRCLPKWPA
ERIETLYNRIDVAALQAEQV
ERLSARRQLRLPDEAWVVGN
VGRLHPDKDQATLLRGFAAA
LPRLPQNSLLAILGSGRLEE
QLKDLACELGIGERVLFLGQ
VEEARRYFKAFDAFALSSDH
EPFGMVLLEAMVAGVPLIAT
ACGGAREVVEGVGILFPLGD
ETALAEGLTHLAALDRRQRE
ACARLMLERLETRFSDAAVR
REFWRLPTIAGFASESAC
>_0061.000909_ NPUN_22DEC03_CONTIG1_REVISED_GENENPF1827 npun_22dec03_Contig1_revised_geneNpF1827
VEASYAQRLRQEKGYAYADN
CNTKTSLSIKMSMVLLTPTV
SSNFEKDSLIYMAKKIHFIS
NSIVKEINNSDNVSILVLDK
EEIISLFKANGILLFRGFDV
DVDIFKEFTNLLSIDFINYA
GGAFSRRVINGDQTVLSVND
FKSEIKLHGEMYYQKNIPLM
LWFFCANPPLEDGETTVCDG
RQFFHEISSSTKELFRQKNL
KFTVRMSKEDWQKKYKTDDV
NQLKEICRNNNTHLKIFDDR
SIMLEYISPAIIPSRCGNYQ
VFINSLLPTKQLSPNILKFE
DDSDIPEEVVSELNEIAEKI
TTEISWRKGDILMIDNTRIL
HGRRSFADDQRDIYIRLCSP
AFSF
>_0057.000483_ NP_842028.1 gi|30249958|ref|NP_842028.1| possible capK protein, putative [Nitrosomonas europaea ATCC 19718]
MARHALMRTELLPTFGMPDK
KVDGFIARIRERHPKMIFGY
PSAMSHIVPCAEQRGVRFDD
LGIKVVFCTSERLYNHQRET
IVRLFGCPVANGYGGRDAGF
IAHECPNGNMHVITEDIVVE
IIGEAGRVLPHRQSGKIVVT
HLATRDYPFIRYRTGDIASL
SEETCSCGRGLPLLTDIQGR
NTDFVVAAEGTVLHGLALIY
VVHDLNEVRTFKIVRKNREH
TRILLAPEAGGDMTGIDTII
IDGFRCRLGAKVTVKFVDAV
LAEKSGKFCYVASHVVLH
>_0053.003928_ MMAG_12JAN01_CONTIG3878_REVISED_GENE3949 mmag_12jan01_Contig3878_revised_gene3949
MKSGWPGLMARAPSRISEAV
VNVDRMRQIDFWAGVPLAFL
MTLYWRIRCFFSPPAPSSAK
NILFIELSEMGSAVIADAAL
KRAGALFPEAKVYFLIFAKN
RPSLDIMGTIARENMLTIRA
DSLFTLAIDTIRMIGKMRSL
DLMAAIDLEMFSRFSALLTF
LSGAPKRVGFHRFHTEGLYR
GELLTHRVPYNPHQHVAKCF
MALVHALTEPEGTTPHGKVL
VTDEEIRLAPVIPTPDVLEA
FKARLFEAYPVLRRVDRWVI
FNPNASELMPLRRWPYDRYM
EVARRLLAEDESLAVIITGV
ASEKAEAQTLVEATGSDRAV
NLAGFTRMEDLIPLYALSKA
MVTNDSGPAHFAAPVGLPTL
VLFGPETPALYGALNDKAEF
LTARLACSPCVSAMNHRSTA
CTDPACMRAITVEQVHATMR
RLLG
>_0031.000605_ NP_295485.1 gi|15807653|ref|NP_295485.1| putative transposase [Deinococcus radiodurans]
MTVDVRQTLTGSEAPSRLEQ
AADQLDDVLLDLRTVQQLDL
AAVVADGNYAKEPIVETVTG
HGLPFISRLPRNANLNDLYT
GEHPRRRGRKKKFDGKVDFS
DLQRFDLVSARPTERVWTQV
VWSVQWAREVRAVVIQQIGK
KGQVTGYAVLFSTAVTMPAH
EVMALYRSRFEIELIFRDAK
QFLGGQDVQLRSQQGIEAHW
NVVLLTLNLCRLEALRAAGG
GQDLVFSLEDMKRRAYNALL
AQVILSNLDLSARFEE
>_0026.000490_ NP_662896.1 gi|21674831|ref|NP_662896.1| diaminopimelate epimerase [Chlorobium tepidum TLS]
MSGAGNDFIVIDNRQGLFNL
THEQVRAMCTRRTGIGADGL
ILLETSETADFRMNYHNADG
FPGTMCGNGGRCAVWFAHLI
GIRPTGKHYRFEAGPSTYEA
EVTGEESVRLHMLPPSDFRD
GLQAGAWNCHFVDTGSPHAI
AYVNNLDQLDVLTEGGNIRH
NKELFPDGTNVNFLEITAPD
ALSIRTFERGVEDETLACGT
GTVAAALMSFRLGKVTSSLV
RVKVKSGETLMVGFNEMMDE
IYLEGPARAVYRGTITL
>_0023.002922_ NP_600029.1 gi|19552027|ref|NP_600029.1| archaeal fructose-1,6-bisphosphatase [Corynebacterium glutamicum ATCC 13032]
MEGMTNPEQTHPAASLEDMI
KTITKTFVIAHDQDSDEHLA
QALVYNAGRLAWRMRENGVD
TDYKTSVSDVVTDADRAAEA
FVAGVLEALRPEDGVLGEEG
ADRASKSGKTWVIDPVDGTY
NFTQGSDYWCSALALVEGDP
SAPSRVLFGAVHRPAMGYTW
FGGPGIRTTLDGKELDLLVD
APLNQISLATYIHPSRIAEP
DIQKAWMSVATHPATLRMFG
AGSIDLANIADGSIGAWVQH
SVADWDWLPGRALIEGVGGA
CIKVTAGGVEWSVAGNAEAV
SEISETLSALD
>_0020.001789_ CAUR_25MAY01_CONTIG1131_REVISED_GENE2644 caur_25may01_Contig1131_revised_gene2644
MALRIAFLTVGDPQRRTGGY
LYHREVFRCWQARNQPVEEI
VLGPADVAGQIAASNRAGQL
VEAGRYDVIVVDALARAVVA
PWLAHWQRLCPLVTLVHELP
TVAGASDPREYEWEQMLLRA
DALVAVSDDGANTLIARGVE
AARIHIASGGCDRLLSRMPV
GKAREELVIAVAQWIPRKNL
AHLVRVWGQVAEHPWRLELI
GESDADPVYAGEVWQAIQHC
PANVIVRGVLADDELAERYA
RASLFALPSRFEGYGLVFAE
ALACGLPVIAGAVGPVPALV
GAGGMLVHPDDEQALSVALR
TVMRDAHLRQHLSTAARQRA
STLPRWQDTAQHLLCAIEWA
YAQRHRVST
>_0018.008870_ BFUN_06OCT04_CONTIG482_REVISED_GENE8871 bfun_06oct04_Contig482_revised_gene8871
LNMTDQTSTRFPPTRDAHAP
VPSGDNSFAWSDARLLGFAL
MDEVHKEFYAVALNLVTCTD
ATAATAIDRFERHAVSHFEQ
EDQWMRSTNFPPRDCHIDEH
AAVLKSVSEVKEAVEQGRAG
AEMVRDLGMHLFEWFPGHAD
YLDSALAAWMMKRTMGGKPV
VLRRKI
>_0018.001855_ BFUN_06OCT04_CONTIG481_REVISED_GENE1856 bfun_06oct04_Contig481_revised_gene1856
MGWKSLLIETPVWIIGRFHR
PRFDPHRDTPREILVLRPND
FGELLTTTPLFEALRKRFPT
TRLIAGVGSWGRPILENNPF
VDEIVEIDAPWNNKLVEDRS
HGNVLRFLWKSPQVAALRAR
GGFDVGIDVLGSYMGALLMM
RTGVRYRVGVRGYRGGWSAC
QTYIEFAARQCGRAALAQGE
LLGATALPEARPQLFLTDEE
RATAAQIWKAGDVPGRRTVR
LIVGVGAGVPSKAWDARQVG
AALAQIAQTLDKAGDAGDFV
IVGSAADRTRAAEAIAAAGP
GVPVRSVAGEVPMRITFALT
EQAGVVLTNSSMLMHVAAAF
RRPTVAVIGGSVTKPDRHDA
IWGYPPPYRSVSPERCVEGE
HARNWPGVERVVQAVLEAVG
TQRAPVGASA
>_0017.001913_ NP_813301.1 gi|29349798|ref|NP_813301.1| hypothetical protein BT4390 [Bacteroides thetaiotaomicron VPI-5482]
MFEIKVSQEIKNACPVFAGA
AVYAAVKNTAYCDGLWKEIN
TFTEDLTTTTQMADIKLQPV
IAATREAYKRCGKDPGRYRP
SAEALRRRLMRGIPLYQIDT
LVDLINLVSLRTGHSIGGFD
ADKIQGNHLELGIGKAEEPF
EGIGRGILNIEGLPVYRDSF
GGIGTPTSDHERTKMDIGTT
HILAIVNGYNGKEGLKEAAE
MIQSLLKDYAGSDGGELIYF
E
>_0013.001003_ NP_881529.1 gi|33593885|ref|NP_881529.1| hypothetical protein BP2949 [Bordetella pertussis]
MAVLARPRPGAQNSASATPK
PLPRSLAMKQALIVIDVQES
FRHRPFWDDSELPAFLAQVQ
ALIDGCRQRDIPVLQVFHVN
AANDPASPFAPASGHVVALR
ELRIAPTAVFRKTVHSSLYA
RDEAGHTLHDWLLEHGVGEI
IVCGIRTEQCCETTTRHASD
AGFKVRFALDATLTFAMRAA
SGKTYTPAEIRERTELVLQD
RFAQVLPAAAALAA
>_0011.002880_ YP_102444.1 gi|53725613|ref|YP_102444.1| cbiX protein [Burkholderia mallei ATCC 23344]
MNKHGIVLFGHGARDARWAG
PFERLAAKLRAARGAEASVV
LAFLELMEPSLAAATAALAA
QGCDTITVIPVFFGEGGHVR
RDLPGLIDACRAAHPGVDIR
CATAVGEDDAVLDAIVAYCM
RASADPTS
>_0009.003580_ NP_244487.1 gi|15616182|ref|NP_244487.1| flagellar hook-associated protein 3 (HAP3) [Bacillus halodurans]
MRVTQGMLAGNSLRHISQGY
MRLGELQDQLSTGKRITRAS
QDPVVAMKGIRYRTQVAEVE
QFKRNLREVYNWMDTADAAL
GEATDALARIHELATQAAND
TYEETQRANIAKEIRQLYEH
LQSIANTKNSGKYIFNGTNT
TNPPIVAPERMDLGFAHLLE
PGTDLQTVEIVYDGQTYHYV
GENADGHLVFQDVRQMNSLP
FDETDSDEFNEKAFQLVIDP
DLGRITSSQPNVNTGAAETK
NVRLNDVVVADREAVSFNTQ
RVEIELLKGVKIPVNTNPTN
VFNNALFGDILRLEKALEDP
SVSGAELTAYIDNFTKHIDQ
VTAERAELGARVNRVEMLES
RILQQEITAKRIMSDNEDVD
LEKVIIDLTIQESVHRAALA
VGARIMQPTLMDFLR
>_0009.003106_ NP_243894.1 gi|15615590|ref|NP_243894.1| septum site-determining protein [Bacillus halodurans]
MTTQKKQAVTIKGTKDGLTF
HLDDRCSFDSIVGELAEKLS
SKHYQMEDQPRIQVKVDVGY
RYLTVEQKRHIQELITDGRN
LDVEEFVSQVMTKEEAEEKR
KEAQIVSVAKVIRSGQVFSV
DGDLLLIGDVNPGGTIRASG
NIFVIGSLRGIAHAGYKGNG
EAVIATSHMAPAQLRIGEQI
FHWSKEEQQAGDRIMECAYI
ASDTNEIQLDRVQKLLKIRP
NLATFLDEMVEQ
>_0006.004351_ NP_890690.1 gi|33603130|ref|NP_890690.1| putative DNA-binding protein [Bordetella bronchiseptica RB50]
MAPFSICVSILLLVGDSNRA
GVTARYVSEQLGLSLSTAYR
WIDMLRQSGLVVRHPSTRKL
HLGPLAFDLGVQAVARPYVP
PAIEKVLKPLASQHACRLHL
VRCSGDYSVLQRTYFDVAEL
EIVPSKVAVMRLLGIGPAGV
CLLSRWPDYEIDRYLVRNQD
GLLAAGYQGADIRERVRQCR
KLGCFVTRSVLTPGYTAVAI
DFEVDGVVYGVSAASAGSEG
GKQFHAIREALDRARASLAT
QAVPEFALEG
>_0006.003501_ NP_889320.1 gi|33601760|ref|NP_889320.1| putative transcriptional regulator [Bordetella bronchiseptica RB50]
MIQESLYYFGMNAEQAVSSL
GALAHAQRLSVFRALVVAGP
AGLTPSVMADGLGIARNALS
FHLKELAHAGLVSVEQQGRN
LIYRADFFRMNALLGYLTEH
CCQGATCEVSDSRKNTAGCD
AGARRA
>_0006.003174_ NP_888669.1 gi|33601109|ref|NP_888669.1| hypothetical protein BB2126 [Bordetella bronchiseptica RB50]
MRHIEISYSLGPSDPRPALL
RNALMDLLSAVREHGSISAA
AKALDLSYRHVWGELKKWEQ
TLGRTLIVWDKGQPARLNEF
GEKLLWAERQAQARLAPQIN
ALRADLERAFAVAFDDAAHV
VPLYASHDNALQALREHAVA
SAKLHLDIRFTGSVDAISAL
NEGRCVMAGFHTREAPEPGS
LAERTYKPMLQPGLHKIIGF
AQRSQGLIVARGNPHGITSL
ADLAASGVRYVNRALGTGTR
VLFDELLEQAGLKPAAIAGY
ERTEPSHAAVAHAIVSGSAD
AGLGIEPAAHRERLDFIPLV
RENYFLVCLKSTLDQPSTQA
LLSILRSPAWQATLAAIPGY
APAQTGQVLSMRRVLPWWDF
ARKKVRRARPA
>_0005.000700_ YP_321517.1 gi|75907221|ref|YP_321517.1| Protein of unknown function DUF820 [Anabaena variabilis ATCC 29413]
MSLSTPVFANKTLEEFLKLP
ETKPASEYIDGKIYQKLMPQ
GEHSTLQSSLVTAINEIAKP
QKLAYAFPELRCTFSGNSIV
PDIAVFEWSRIPLLPNGRIA
NKFEISPDWIIEILSPEQSP
NRVIRKIMFSMQNGAKLGWF
LDPNDESIMVFQPDILPEIK
AGKEILPVMSVLANWQLTVE
DIFSCLNFS
>_0004.000437_ 17738794 gi|17738794|gb|AAL41469.1| transcription antitermination protein [Agrobacterium tumefaciens str. C58 (Dupont)] (gb|AE008688|:444725-445291, Atu0450
MLSMAAENQPGKHEWFVVET
KHKAEKAVEDALRKAGVKVF
LPLETIGETVVRGRIIPAVS
RPLLPGYVLVNIVYSPAAVC
GIARLEGVAGFVGGMVHPHR
VSDEEMNRFKAFGDDETAPD
VKHCEQFKRGDKVRFVLGPF
ASFGGNILKLRKDRAVDGER
VATGAVVAVDVFGKVSTIEA
PLALLEQL
>_0120.000124_ YP_001302391.1 gi|150007648|ref|YP_001302391.1| hypothetical protein BDI_1003 [Parabacteroides distasonis ATCC 8503]
MAKYKLIKKVNPQKRQEPGK
WYATPKSETPLSGKAMTCAA
TANTTTAPIEMEASLELLAK
FVPQQLQQGHTVKIPGLGTF
RLTFKSDGVEDINSFRANSM
IKNVRIVFTPSKELRESVLS
GLTFEDGGVLEDDISYASIA
DYRLAKGVPEGGGDSESPGE
I
>_0112.001116_ YP_910030.1 gi|119026185|ref|YP_910030.1| diaminopimelate epimerase [Bifidobacterium adolescentis ATCC 15703]
MSIPSIVYKAHATGNDFVVY
LDEDGTHEPTADEVRFLCDR
HFGIGGDGLIRLAHPQAVSD
VNERQIADCAAGDADWFMDY
RNADGSLAEMCGNGTRAITL
FAQRQGIADQPGGKPFHLGT
RAGVKVLTSLGDVPGLGKDV
FQVEMGAWKRGDVDGYEVTI
PGTSGSARGTFVDMGNPHVV
AVLEDAFASLPNVEDLDLVT
KPVVAPEIPSDQNVEFVRID
EQSEGDDAGEATMRVNERGC
GETLSCGTGLCATAITLRAK
TGIDHWTITVRGGTLRVDVT
DEDVKLTGSATIVGKIELL
>_0111.002919_ YP_209875.1 gi|60679731|ref|YP_209875.1| hypothetical protein BF0135 [Bacteroides fragilis NCTC 9343]
MYKNLFNLLTILLILPSCTD
MSPNISVVCEENNIGNCILK
WETTPLIKGQVKVYTSDNPE
FIPEDNPVAMANISDARMTI
VTNDPSRRSYYMLVFNDKYR
VKVAPRNVNMPGIQNFRDLG
GYKSATGKHVRWGKLYRSAQ
IDSLNCFALRKLQNLGIKTI
LDLRSESELHNTPPLQKGFN
VVHIPINTGDMEHILHGIQQ
EKIKTDTIYHMVEAMNRELV
AKYQKEYKEIFDILLDKNSY
PVVIHCSSGKGRTGIVSALI
LASLDVNADIIMEDYRLSND
YFNIPKASKYAYNLPVNSQE
AITTLFSAKEDFLNAAKDEI
ERKYGDVPTYLRKAIGLQSE
DIHRLRTILLE
>_0110.001841_ YP_001301271.1 gi|150006527|ref|YP_001301271.1| hypothetical protein BVU_4047 [Bacteroides vulgatus ATCC 8482]
MIDYSVFMMGNPMDVDAAQK
AYAKAQVSEIMPFSQFVKHI
ADHNGVFTRGTVKGVIADMC
ECLVEMLLEGKKVQLAELGN
FWISIGSEGAEDLKKFTESN
ITAVNIVFTPGEDFQNLRSR
AAFNPVASRIAQAATLKAEK
AGKGTVDLDAAKGKTPASTN
ENNPSL
>_0106.002325_ SWOL_07JAN05_CONTIG94_REVISED_GENE2326 swol_07jan05_Contig94_revised_gene2326
MVKIKGLNGNLVFIFGPGSF
DEYLSFLEEKLTANKQLFSG
SRVIFKGEELKKLSHSQIAS
LQELCLRHGVIMNNNAVTVN
KGSSKDLVIYRNLRSGQKLR
SEGSVIIWGDVHESAEILAA
GDIIVLGKLDGIAHAGCYGD
MNRLIFALSLSPGQIRIGDR
LSRSPEDPDKSPHPEIAFWD
GENICIKAYSSRSGLRG
>_0106.001312_ SWOL_07JAN05_CONTIG131_REVISED_GENE1313 swol_07jan05_Contig131_revised_gene1313
MILLNLGTYPPKQCGIATFS
MDLRNSLLINGNEVKVMAVS
DNSYQYHYTDEVLFNLKQNH
KQSYIRAANYLNKAPLELII
IQHEYGIYGGMEGEYIAELV
RLLHKPFVLITHTVLPRPSK
RQKQVLNYLCSRASAIVCMT
RRSEHLLSDLYEAPPELIQV
IPHGVPEFKEQTQDSLKEKY
GLQGRDLISTFGLIGPGKGL
ELGIQAIAQIVKEHPQATYL
ILGQTHPMLKKQEGEKYRHM
LEDMVVKLGLEHNVVFVNKF
LSDEELGEYLYMSDIYLSPY
PNKDQAVSGTMAFAIGCGRA
IVSTSYAYACEFLSGGRGLL
AAEADPEELAGLMKRILTNP
DLKQSLQYNALKLGKSWSWP
SVGQQYTRLFEKLLAETPLT
KEPRISYARL
>_0105.000024_ YP_055669.1 gi|50842442|ref|YP_055669.1| RNA polymerase sigma factor [Propionibacterium acnes KPA171202]
MRYTDFIDGVEILDPAEEHD
LFRRLDAGAIADAILAGHFL
AAVPVSEAELRRISDDGVGA
RQTLWRQMLAIVLTQARQAA
VSYRCSVEDLIQAGCIGLGE
AIERYDVRRGARFSTVAWTW
IRRRIGEEVVRLSGARSRSV
MREAAEVARIEEELTARWQS
VPSSDAIAARMGKDVMWVEK
RRVECWEVETSFFEQVAVVQ
KSCDDPESGLIGLLTGQERR
IVELRHGFEGEPMTITAVAH
ELGLSASNVRRIEQRALGRL
RRHLQQVVAA
>_0089.001388_ NP_345962.1 gi|15901358|ref|NP_345962.1| ATP synthase F1, delta subunit [Streptococcus pneumoniae TIGR4]
MDKKTVKVIEKYSMPFVQLV
LEKGEEDRIFSDLTQIKQVV
EKTGLPSFLKQVAVDESDKE
KTIAFFQDSVSPLLQNFIQV
LAYNHRANLFYDVLVDCLNR
LEKETNRFEVTITSAHPLTD
EQKTRLLPLIEKKMSLKVRS
VKEQIDESLIGGFVIFANHK
TIDVSIKQQLKVVKENLK
>_0088.004312_ NP_716575.1 gi|24372533|ref|NP_716575.1| hypothetical protein SO0946 [Shewanella oneidensis MR-1]
MKTKETPEQKPEDMPIPIVD
ITSVEQQTVSLNLPSYGVVT
PKYKTQLVTEVQGRMLTISP
QFVAGGIVKKGDQLAQIEPS
DYEADLMQAEATLAQATAAL
NEEIARGEVAKIEFKGYDKG
LPPELGLRIPQLKKEQANVK
YAQAALARAQRNLERTIIRA
PFDGIIKARNVDLGQYVTLG
TNLGELYDTSIAEIRLPISN
DDLAYLESVDNPDTQVTLSA
SLAGKENTWIGNIIRSEGVI
DADNRMVYLVAEIKDPYLRE
HKTQGSLPLKYGSFVNAVIK
GRTVDGIVKLPRHVVRNEHV
ALINDNNIVEMRHVNVVRSD
LQNVFIKDSLKTGERVAITH
FNNMANGQLVKVIGEETKPA
QTPAPESSLAATGVK
>_0084.001391_ SFRI_16AUG04_CONTIG77_REVISED_GENE1393 sfri_16aug04_Contig77_revised_gene1393
MKTLAQNIQEKLKASGLTQK
ELAERANISQVMVHKLISGK
AKESSKLVAIAGVLGCTAEE
LMYGLEKHVPTSNAEWAGPM
ETWDSNTPLNDDEVEIPFYM
EVELAAGHGIAEASEYHGPK
LRFAKSTLRKSSVDPTNAAC
VRVSGNSMEPVLPSGSTVGV
DTSQTDVIDGKMYAINHDGM
LRVKTLYKLPGGGLRLRSYN
IDEWPDERYEGEAIKQIKII
GKVFWYSVLM
>_0058.001153_ YP_208482.1 gi|59801770|ref|YP_208482.1| putative transcriptional regulator, repressor [Neisseria gonorrhoeae FA 1090]
MKGSGRIFMETFKDRLVFLW
KSEARQAKIASDIEMTIAGF
SRIWNEGGLPKSETLKKIKQ
LKGCSIDWLLTGEGNPFPDE
APKKSLAYDTLGNEVDTDEF
VFVPRYDIRAAAGYGQFVGH
EEPVFTMAFRRHWIENYVTR
DTKNLSVISVKGDSMEGVLN
DGDSILVNHGENTPRDGLYV
LRINENLLVKRLQIVPGGII
NVISANEAYPAFEINLNDLT
DDVEIIGRVEWFGRTV
>_0056.003497_ SARO_25NOV03_CONTIG30_REVISED_GENE3721 saro_25nov03_Contig30_revised_gene3721
MNAPVPAADFEFPTEIPGLP
LAGRKVLIVVENLPLPFDRR
VWQEARTLKAAGAQVSIICP
TGKGYEKRFEVIDGIDIHRH
PLPIEASGALGFLLEYGAAL
FWETVLAWKIFLKRGIDVIQ
GCNPPDLIFLVALPFKLLGV
KYIFDHHDINPELYEAKFDK
RGFFWKLMVLFEKLTFKAAD
VSMATNHSYRKIAIERGGMD
PDKVFVVRSGPDLSRLKRVP
PVESWKNGRKHLVGYVGVMG
DQEGIDLLIDAVDHIVRVMG
RDDIQFCLVGGGPSLAKLKA
LVAEKGLADFIQFTGRAPDQ
DLFEVLSTMDVGVNPDRVNA
MNDKSTMNKIMEYMSLEKPI
VQFDVTEGRFSAQEASLYAR
ANDPVDMAEKIVELIGDPER
RARMGALGRMRVETELNWGH
QIAPLIAAYRKALCLAD
>_0055.000954_ RGEL_26JUN05_CONTIG562_REVISED_GENEMPEA0323 rgel_26jun05_Contig562_revised_geneMpeA0323
MAGLFIIAHAPLASALKAAA
GHAFPEALSVVEALDVTPQL
TPEEIEAQARILLERSLSVP
GRREALILTDVFGATPCNVA
QRLADGVRVKIVTGANVPML
WRTMNYVDQPLDMLVARALA
GATQGVLQVAPARPQNQAQN
VGARPGDDFNAHQHQQ
>_0053.001607_ MMAG_12JAN01_CONTIG3805_REVISED_GENE1620 mmag_12jan01_Contig3805_revised_gene1620
MAEEYRRAVNGDETMIEHAS
QLLHAFRRDSVRDYCADWAD
LMEYCRFSAAPVGRFLLDLS
GENH-YPFAPSDALCAALQV
LNHLQDCGKDYHELKRVYLP
QDWMAAQGLSVDVLAGSSSP
AALRRVIDQTLDATDGLIAL
AQPLPGLVKDWRMRLQSAIT
VRVAEQLSAKLRRGDPLAER
VKLSKLDYAGVFLVGLWRGL
TA
>_0046.001003_ NP_469828.1 gi|16799560|ref|NP_469828.1| hypothetical protein lin0485 [Listeria innocua Clip11262]
MEVEIVERNAFTAVGKKRTF
SVENDAQKEKISQFWQEANA
NGDAERINELAEFATIDGIL
GVCQMNGDKMDYYIAIESEL
TPPEDMEKLTIPASKWAIFK
SVGPLPSSIQKVWEYIYGEW
FHTSNYNHGNAPELEVYTEG
DTTAVDYYSEVWIPVVEKE
>_0034.004442_ NP_418470.3 gi|49176454|ref|NP_418470.3| transcriptional repressor of Zn transport system [Escherichia coli K12]
MFFLEHGKVRTFLTPTLRCP
MEKTTTQELLAQAEKICAQR
NVRLTPQRLEVLRLMSLQDG
AISAYDLLDLLREAEPQAKP
PTVYRALDFLLEQGFVHKVE
STNSYVLCHLFDQPTHTSAM
FICDRCGAVKEECAEGVEDI
MHTLAAKMGFALRHNVIEAH
GLCAACVEVEACRHPEQCQH
DHSVQVKKKPR
>_0032.003530_ YP_009112.1 gi|46562180|ref|YP_009112.1| glycosyl transferase, group 1 family protein [Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough]
MNILTITALPAGGATYAAQR
LHSALVEYGHACTLACCDPV
QPGHVALNYQRPDATPFMSP
LFRYWSTLSTPETREQGACE
LFSDTSTLLASPALPDHIVE
AADVVHLHWASGILYSPALF
RLLRNKKLVWTLHDMNPFTG
GCHYHVSCERYEHECGNCPL
LAHPAPNDVSLQAHRFKRLL
YRELDITMVSPSAWLADKAR
RSPLFTGKKVAVIPNTHDTT
LFAPRDRASLRSQYGVEKDT
FIVLTGVESLDNPRKNIGCM
VEAMEQFAQRRPHISFELVL
FGAGGANLLASFPTRHVGSL
DAESLVDWYNMADVFVHPSR
LDNLSNTLCEAQCCGTPVIS
FDAGGSTEAFQDGETGFISG
NQPQHLAEALDRLLSSDMES
LRQKARMFAMNRFNGKNIAQ
RYTDIYEDDIINQEHHGMHG
PADERLASNAMDGFLKVAPF
DKPAP
>_0030.002655_ DHAF_12NOV03_CONTIG1083_REVISED_GENE3023 dhaf_12nov03_Contig1083_revised_gene3023
MIKRRRSLLILSGNSPKSMQ
DAPVFDPDVVLFDLEERVVP
QEKDSARHLVKEALSFLDYS
KTEVMVRINPLDTEDGQKDM
DSISRVKPGALVIPKANHEV
IKQVDSILTTIENEEGFPQG
GIELIPVLETALGIETINTL
IETSPRVTGVWLNAEGLMDE
FGSKRTKEGDELRYVRGRVG
IACRAAGIHAIDTCFADSND
NEGLEKDALTAKRMGFTGKL
ALDGRQIDTLNAIF
>_0026.002084_ NP_661521.1 gi|21673456|ref|NP_661521.1| transcriptional regulator, NusG/RfaH family [Chlorobium tepidum TLS]
MTNALKKDGCWYAVYVRSRY
EKKVHQYLLEKGLSSFLPLI
ETLRQWSDRKKRVEEPLIRG
YVFVNINYHKEHVHVLETDG
VVKFIGIGKTPSVISERDID
WLKRLAHEPDAIGETVISIP
VGKKVRVLAGPFKDMEGVVK
KEGREERLLVYFDSIMQGVE
ITISPELLAPIEKGASGQAV
EGSKTGDHEVESAIRHLAHS
>_0021.000024_ NP_419762.1 gi|16125198|ref|NP_419762.1| cytochrome P450 family protein [Caulobacter crescentus CB15]
MDLISQTVVDGKAGPGAPPT
YPTLKDVDLADIFRFTKGQP
WADFARMRQEAPVMWHPEPM
GGPGFWALTRYEDVHRVNGD
PETFSSQRGGILMSMGAPEK
RHALLFRASMDTMINMDAPH
HLQLRREHMPYFTPSYLRGL
TERVKGEVTRLLDEMEPLLA
NGAEIDMVEHFSSVLPLFTL
CEILGVPPEDRPKFLTWMHY
LERAQDLAVKQANAPMQPTL
ELMQFVMDFNNNVEEMFEYG
RTMLHKRREDPKEDLMTAIA
RAQLDGAVLPDEYLDGSWLL
IVFAGNDTTRNTLSGAMRLL
TEFPDQKQKLIADPSLLGGA
VDEFIRMVSPVVYMRRTATR
DVEVNGQLIREGEKAIMYYG
AANRDPAMFENPDQLDVTRA
NAGKHIAFGYGPHTCIGKRV
AQIQLEEAYRQILARFPDLN
WTGNIEIAPNNFVHAISKLG
VKRG
>_0018.007510_ BFUN_06OCT04_CONTIG482_REVISED_GENE7511 bfun_06oct04_Contig482_revised_gene7511
MSKNDLADLLRVGPETTMGK
FMRQYWLPAVLSHEVKADGD
PVRLMLLGEKLIAFRDSSGR
VGVLDHRCPHRCASLFVGRN
EENGIRCVYHGWKFDVDGNC
VDMPSVPARLDFKEKVHARA
YKAVERNGLIWVYMGENQNN
PPPLPAIEANMIPGSKIWCL
QRQCNWLQALEGDIDTSHVG
FLHVGALQPEDLPEGSPLRP
TVLNRAPEYRVQNAEWGATY
GAYRLAEDGRMSWRAAQFMF
PFWTMTPNILFSTRAIARAW
VPMDDTHVMLFDITGGVDEG
NPFFTTKLKNGEPMYEKIRR
KPNGTGWYDRWLPVDGLQND
WGIDREAQRNMIHYTGIDNP
SMQDQAITESMGPITDHSFE
HLAPTDQMIAFVRRRLTQAL
RNFRDDSAPAPCAFSPETYF
GARSGAFWADPVVEFSTAYR
VELEKAQRWPANPDGSAVER
EPEVAR
>_0018.006164_ BFUN_06OCT04_CONTIG482_REVISED_GENE6165 bfun_06oct04_Contig482_revised_gene6165
MKPVPEAAAAAEHGVAAGQE
LPAGKRKLIEAALRLTAGGR
SFTSLGLRELAREAGLNPNT
FYRHFDTLDDLAREAVESVS
RRLRPMLRRERWLAAHDEPH
SVPRRACVAFFAFTLENREA
FLSALAEYHGTSRALREAVR
ANLHEVSAEMADDVVELELM
PTLSRETVDEVCTQIVLQLF
HLSAEYIDANEARRDALIAY
AERFIVRLFAGAVLLAQHEA
GRAPLSMRA
>_0018.001261_ BFUN_06OCT04_CONTIG480_REVISED_GENE873 bfun_06oct04_Contig480_revised_gene873
MRAVILDAAVELLRQTSPEK
VSLREVARLSNVDPGLVRYY
FKDKSGLLTEVGSRVLASLA
VTADEKANRPMSFKKHLEAR
IADLLSLLSHNRYLHQVILN
QIIHWQKDAGRGALTQLADN
AIRRSTAMIEQGNKAGEVRL
VDPRFLHIAIIGLCESFVTM
SPLVAEFFGGEPDADVELAY
RDFVVDLLMHGLTTEPTAKK
KPSRPKNRQAKKELKE
>_0017.001127_ NP_812077.1 gi|29348574|ref|NP_812077.1| tRNA/rRNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
MRKLKITELNRISAEEFKQA
EKLPLVVVLDDIRSLHNIGS
VFRTSDAFRIECIYLCGITA
TPPHPEMHKTALGAEFTVDW
KYVNNAVDAVDNLRKEGYIV
YSIEQAEGSIMLDRLELDKT
KKYAIVMGNEVKGVQQEVID
HSDGCIEIPQYGTKHSLNVS
VTTGIVIWDLFKKLR
>_0016.000754_ YP_438436.1 gi|83718071|ref|YP_438436.1| class III extradiol-type catecholic dioxygenase, putative [Burkholderia thailandensis E264]
MLISRPAARPASCCSCRDTP
SFARSPTHRTGCLFMGKIIG
AGLISHAPVVMMPRAVRLRE
NDGRDFTLATGLARLRREVF
DAHDYDTVLVLDSHWRTTTE
AVVTAHARRTGRFTSDEMPN
AIRQLPYDLAGDPELARAIA
ELATRRACWIAAVDDPCLPI
HYATLNPWTYLGRPDKRWIS
MSVCQTATTDDFLRMGEIVA
QAISRLDRNVLLVASGGLSH
AFWPLAELRRRMAGAASNIV
TPAARAADERRIAWLEQGRH
DRVIDAMSEFLRFDPEANFG
HYLMMAGAIGARACAARARR
FSEYENGIGTGHVHLWFGPV
DGGWTRAETRAEREAARA
>_0011.001470_ YP_102872.1 gi|53723420|ref|YP_102872.1| RNA polymerase sigma-70 factor, ECF subfamily [Burkholderia mallei ATCC 23344]
MRAPSRPAARTPGAREHGAL
VDVLVANRPMLVKLARGFVG
CASRAEDVVHDVFVKLVDFP
NQDAIRQPIAYVTRMVRNAS
IDACRRQTLENTYHADEDDG
LDVPSPELSPEAALVVRDTL
RHVYDALAQLPARSRAAFEM
VRLREETLQSAARALNVSQT
LVHFMVRDAERHCVACVDAS
ERGLACPAFCGARARTVKKC
VRDSSIE
>_0011.000002_ YP_102680.1 gi|53725402|ref|YP_102680.1| transcriptional regulator, TetR family [Burkholderia mallei ATCC 23344]
MLDFPAMKPIRLTREQSKDL
TRERLLSAAHAIFTKKGYVA
ASVEDIASAAGYTRGAFYSN
FRSKAELLIELLKRDHEEAE
ADLQKIFESGGTREQMEAHA
LEYYSQFFRNNPAFLLWGEA
KLQATRDAKFRARFNEFVKE
KRDRFTHYILTFAERVGTPL
LLPADVLALGLMSLCDGVQS
YHAADPRHVTGDAAQQVLAG
FFARVVLARAPD
>_0008.004450_ NP_976706.1 gi|42779459|ref|NP_976706.1| transcriptional regulator, TetR family [Bacillus cereus ATCC 10987]
MPKIVDHDEKRKQIAEAAWN
IIRKEGVEKASIRRVAAEAG
MSSGALRHYFSTQDEMLLFI
MNYYLEEGEKRSQNKEWSEN
PVQAVEEVLLELVPIDEEKK
IETSVWWILALRSLTSDTIK
DKKDEMTDGTYELANSMIEI
LALKGVLSDSMNAELEKSRL
TALIEGLSIHALLRPDVYSP
EKVKEVIRYHLETLCNKIN
>_0003.003925_ ARTH_26JUL04_CONTIG47_REVISED_GENE3931 arth_26jul04_Contig47_revised_gene3931
VKAAASIEAMGASTGLERLH
HLFELFAVLAYAPAEERRYL
ADEWFRPQLDGQAAAVVDII
LEYVFTNHAGNVKMSEAAAL
VGMPEPTFSKYFKRATGQNF
SALVRKLRLAHARRLLERSD
KAISEICYEVGFSNLSNFNR
HFLNDAGETPRNYRQRVQS
>_0117.002052_ YP_794280.1 gi|116332753|ref|YP_794280.1| Transcriptional regulator [Lactobacillus brevis ATCC 367]
MSNQTKEKIIIATQQIMLET
ASINVRLTDIADRVGITHGA
LYRHFPDKQSIMVAVAKRWF
EQAILQNIHVASTVINPLNF
LHDWLWQFANAKKAAYRDSP
QMFELNTLYVENDPAILREV
LLSSMKMIDDLMNFHDATYL
RAEIILAAFSEFTLPSFRKS
WYSPDYTVRFERLWQLISMG
LTNL
>_0113.001123_ YP_001088737.1 gi|126699840|ref|YP_001088737.1| putative conjugative transposon protein [Clostridium difficile 630]
MCIFFSFFLKFIEDLTPSHR
DRSKQGYLTPCDGKTIEHQF
DSFCKTVLRNYARDIYDENK
RRNDYLVSLESLSLAELSKL
SILDDYDSNYICMVSYDYNI
RIEDVLMAQAIGKLTKRKQD
IILLSFFLNMTNADIATLMD
LAENTIHYHKTNTLKELKEL
MQEH
>_0111.004314_ YP_212899.1 gi|60682755|ref|YP_212899.1| hypothetical protein BF3287 [Bacteroides fragilis NCTC 9343]
MYNLKNEPNMYIENYDFKEW
MQKLFDKLDELCKDVRVLRN
VDKVLSEDDNLLDNQDLCLL
FKVSIRTLQRLRSKNKLPYM
LISGKVYYRASDVREFIKER
FNAVMLRNFEKQFGEKK
>_0109.002601_ RER070207002602 REr070207002602
MRENTGKVVLVGAGPGDTGL
LTLKGEKYIKQADCLVYDRL
SSPEFLSMAKAGCELIYVGK
ENHKHVMKQDAINELLYEKS
KYHELVVRLKGGDPYVFGRG
GEEALYLVDRNVEVEVVPGV
SSSVAALAAAGIPITHRGIA
KGFQVITAHSRKDEEADIDY
SLLTDETITCVFLMGLAHVK
SIAAGLMKAGRRADTPAAVI
SNGTLAAQRKCIGTLADIGE
KIEEAKLTSPAIIVVGDVVS
LNDRLDFFEKRPLFGRKITV
PYIKTNELIAKLQQLGADIT
PVKTGIIKPVIIPKFVDKVR
SADWIVFTSKNGVRSFFYNL
DLAGADIRLIANARFAVVGK
ATEKELVKHHINADIIPAEQ
TGKGLADAMKLCMPYAYGVS
DEDTFDLGKNSTLDLSNDNI
SDKMCKVCIFSAKEASPDLE
AGLKEICELEKIDAYVNEQA
YEGIPESIGNMVSEAVFTSA
SNVERFFHMLPENAYVETAY
SIGEKTTAALEQHNVREIVQ
ADDSSYEALVDKISYKDAFK
D
>_0108.0001331_ YP_460475.1 gi|85858273|ref|YP_460475.1| coenzyme F390 Synthetase / phenylacetate-coenzyme A ligase [Syntrophus aciditrophicus SB]
MSRIIHLNMPPRPYGMHAKL
HWEQSTCKVKPAGAMYTNWL
EKRLYQGVFYKINLFNKGIS
EEMLATYYGRDLLTQNQIAE
IQNEKLREFLKYCNDNSPYY
HKQIQEHSVNLRAEDMFAEL
RKIPSISKMEITRNLESIFS
REYVGRKGLIAKFTGGSTGT
PLEIWGNHDDYRENNVIIAR
QRRWVNWVGGMKTMTLFGGS
VDLPSSLRRITKRVLINDTI
LNIMDRSNTDFSSIVAVIRK
KTPHALIAYFSILKELSQVC
ECEKRPLSGINVAIACAEPI
EERARRHAEQWLNAPIYFQY
GTRETGTFAQECRAQNGYHY
AQDIIFCEVLDDDDNPCEFG
NLVITWFANKVVPLVRYKIG
DSASIVTEACACGLPYHRID
RIEGRMASMIITPDNRRITS
LIFPHLLKDYDWIIEYQAEQ
TAKDHIVIRIRTNRKSSISD
ALEDIKKKFNELLGRDICLE
FKINEDFLKVPTGKHLYFVS
HLNSIPGCTE
>_0108.0000556_ YP_461888.1 gi|85859686|ref|YP_461888.1| glutamine amidotransferases class-II [Syntrophus aciditrophicus SB]
MCRLLGITNFEFSKHQQIVL
NFCELARSGMVMKGDPPGHA
DGWGVAFYQNGELEVYKSGG
NLLEETDQALELLSKTRECP
VVILHLRKSAWKNTTSFRHA
HPFRYGNVAFAHNGTVYDYK
ELIPDITPSVLRKDALDTEV
FFHHFMRNPSPELGKAFLHT
VSLIKSLCRYSALNCLFSDG
LKLFAYRDYSREPAYYSLFK
AFSGNSCFISSQTLDKITCW
ELMKKEEFLVV
>_0107.002108_ AFE_2164 AFE_2164 transcriptional regulator, LysR family {Acidithiobacillus ferrooxidans ATCC 23270}
MKSPVHLNALRAFEASARHQ
SFSAAAAELNVTAAAVGQLV
RSLEDWLGTPLFVRGSSGRV
RLIPTEAAERALPDIRAGFD
RLTLGILLREHWRLQKPADL
AQETLIHDLSMDRHTAFPTW
EAWMKKAGVTDVITQRGMRI
NNSAAVLQAAIEGHGVALAR
SVMARDDLASGRLVRLFPDI
DFASALAYYVVYRPECASLP
KLTTFRDWLLAEAAPAQAGN
GEF
>_0097.000804_ NP_394439.1 gi|16082017|ref|NP_394439.1| 5, 10-methylenetetrahydrofolate reductase related protein [Thermoplasma acidophilum]
MLNRRKEMLSSSIGSLNFVK
SVEIVPSRNFGTDDLIAAAD
MLDGRVNALTCPENPRGSPG
IDPIMALYIISNERNIIPVP
HITPRDKNRVHILSQIETAQ
KVGIRNFFTIGGDPINPKYE
SREVREIDVMEIIRMIKGRE
NAIVGAALNPYRDVEPEIVG
AKIKSGADFFISQAVYSAEY
LQKDWIKKRNFKLIAGFLPL
TKKSQVKFSENLGIVIPDSV
KQRLLNSEDVISTSMKIITE
VFDEVKEYVDGIHIMPLGHN
EIAAQILETI
>_0091.001517_ SPUT_CN32_28JUL04_CONTIG148_REVISED_GENE1520 sput_cn32_28jul04_Contig148_revised_gene1520
MTSASELVYMSAKQVAEYLD
LNEKKVYAMANDRILPATKI
TGKWLFPKVLIDRWVMDSCH
SGMLTDRLLITGSDDPLLSM
LVARLMSQVGSRELISYSAT
GSRLGLELLAKGYADVCTLH
WGSMEDRNIRHPALLKGYNN
HQQWIMVHGYSRQQGLIMRA
DMHHRCQEEDKVVSLPWRWV
SRQGGAGSQQHLEHWLLKQG
ARLDQLNVLLTAYSERELAG
YIARGDADIGFGCQSVALES
GLSFVPLVKESFDFVMPQSI
YFRRQLQQLFTMLSSCHTRQ
MAALLGGYDLTDCGQLLWSA
S
>_0091.000105_ SPUT_CN32_28JUL04_CONTIG106_REVISED_GENE107 sput_cn32_28jul04_Contig106_revised_gene107
MPKLLGIAYKTVKNGLMNEV
LYANVTQLSGVEKDIFGRPG
KRQVTVLSKQQWLIACQSIN
VDLPWTTRRANLFVDGLVFS
SADVGKHLQIGELLLEITGE
TDPCKKMEVAHIGLEAALSP
DWRGGVTCRVIVGAMIHQGD
TVTLVTESLS
>_0087.001363_ NP_721940.1 gi|24379985|ref|NP_721940.1| hypothetical protein SMU.1604c [Streptococcus mutans UA159]
MQGKDIILGILSKKERSGYE
INDILQNQLSYFYDGTYGMI
YPTLRKLEKDGKITKEVVIQ
DGRPNKNIYAITESGKKELA
SYLQSDVNDEIFKSDFLMRL
FFGNSLNDDDLEQLIREEIE
RKEEKIKRLSENLEIWKKKG
ELTPTQEITIKYGLAQYKST
KKVLEEELAK
>_0082.001066_ NP_764517.1 gi|27467880|ref|NP_764517.1| competence-damage inducible protein cinA [Staphylococcus epidermidis ATCC 12228]
MIEDAIVLPNKHGMAPGMLV
ELGKQKIILLPGPPKEMQPM
AKNELLPYLMDKDEVIFSEL
LRFAGIGESKLETLLIDLID
EQTNPTIAPLAGTHEVYVRL
TANAESKERCQLLINPIRDE
ILNRIGTYYFGSDEVSIEES
VINSAKQNFAIYDGVTNGAL
FTRLKNADNKNLVKGMLPHS
NQFIDVTSEFNTVLFNAAQY
VRDLYQTDLGIVLLNKDNIV
YLGIYDGNNFDIETFKMSQS
RNLLRSRSQNYAMIRLLNWF
NK
>_0081.000995_ SDEN_20JUL04_CONTIG112_REVISED_GENE952 sden_20jul04_Contig112_revised_gene952
MTQVQGSLTCVGVGMMLGGH
LSPIAHSHITQADVVFSGVS
DGFVEQWLSGLNADVRSLQV
HYGEGKSRNISYGEMVQVML
AEVRLGKKVVGAFYGHPGIF
VKSTHEAIAKAKEEGFAAKM
IPGISAESCLYADLGIDPGK
VGCQHFETTQFMLYHRQLDP
SAHLILWQPGLAGDLTYGIK
PTGRAERQLLVELLSKDYPL
EHECILYEAATMPLQSGRIE
RLPLNHLPLAQIALHTTLVL
PPSQRLSPNNEMRTKLQALA
LQQDQALHQGSTAQVLPFTT
LKRNLL
>_0077.002408_ NP_373152.1 gi|15925618|ref|NP_373152.1| similar to transcriptional regulator [Staphylococcus aureus subsp. aureus Mu50]
MKGVIIMSTNKNDYEHMLFY
FAYKTFITTADEIIEKYGMS
RQHHRFLFFINKLPGITIKS
LLEILEISKQGSHATLQKLK
EQGLIIEKVLETDRRVKKLY
STDKGDQLIAELNKAQDELL
QNIYQQVGSDWYDVMEALAK
GRPGFDFIKHLKDEKES
>_0074.003746_ RRUB_10JAN05_CONTIG98_REVISED_GENE971 rrub_10jan05_Contig98_revised_gene971
MTEKLTGKTPTGAPAMAGQA
VGDQRGADDRAGRFSERLAT
ALQGRSANWLAGRIGGSAST
VRDWLSATSEPGLGKLVATA
ACLGVPLDWLATGRVAEGAT
APPSDLFGERGGGAVTRAPL
SVRPAEDETAPHRGLALYDT
VAAAARMGGGHPGAAGLDLP
ESYLRDHLRLDPQRAIAVAV
HGDSMEPALSDGDLALIDTA
TRALERDDLYAFLLEGEGYI
KRLQKAGAAVIVHSDNPAYS
DWTIPREIMASMHLLGRVAG
VLHRL
>_0073.006342_ YP_298346.1 gi|73537979|ref|YP_298346.1| putative citrate lyase [Ralstonia eutropha JMP134]
MTTATHPNDALFAGEKSFPV
LAACEHFAGSEKLIGKAMDL
QVEYGPVFDVTCDCEDGAAA
GQEREHAEMVARMIASDRNV
HGRAGARIHDPSHPAWRQDV
DIIVNGAGGRLAYITVPKAT
NSGQVAEVIRYIGDVAKRAG
LDKPVPVHVLIETHGALRDV
FQIAELPNIEVLDFGLMDFV
SGHHGAIPAAAMRSPGQFEH
ALLVRAKADMVAAALANGIV
PAHNVCLNLKDAEVIASDAC
RARNEFGFLRMWSIYPAQIQ
PIVNAMRPDFTEVEDAAGIL
VAAQDADWGPIQYKGELHDR
ATYRYFWEVLQKAKVTGMAV
PAEAERRFFVN
>_0072.000795_ PROC_21JUN05_CONTIG39_REVISED_GENEPMN12A0797 proc_21jun05_Contig39_revised_genePMN12a0797
VIKKQLKLILVSTPIGYLGS
GKGGGVELTIVSLIKGLISL
GHKIILIAPKGSKLPFESEL
LEIRLIDGVDQPSWQHQDRK
DPVLIPSKSVLPNLWEEVID
IANKSDAVINFAYDWLPLWL
TKTQSIKIFHLISMGAESIV
MKETISEISELFPFRLAFHT
KRQSKDYSLKTDPIIVGNGF
DTDDYLFNEMENGPLGWAGR
IAPEKGLEDAVKVANDLGEK
LLVWGLIEDKEYASKIENTF
TNEIVEWKGFLPTNKFQEQL
GRCRALINTPKWNEAYGNVI
VEAMACGVPVIAYDLGGPGE
LIEDGFNGFLVKPNDIEGLI
KATKSISEIKRKNCRAWFEK
KATSKVFAERVENWLHKGLN
KKISADLQD
>_0071.004766_ NP_746840.1 gi|26991415|ref|NP_746840.1| hypothetical protein PP4732 [Pseudomonas putida KT2440]
MCLSHWNEYRTIQTLSYAQN
LFSARCEAPPPSLGSDAWMT
THIQRSALLPYPAQALYDLV
NDVASYPEFLPWCSASTVIE
TSDTHMRAKLEVAKGGMSQH
FVTRNVLVPGQSIEMNLEEG
PFTQLHGVWVFKPLGEKACK
ISLDLSFDYAGPIVRATLGP
LFNQAANTLVDAFCQRAKQL
NA
>_0063.001587_ NP_252410.1 gi|15598916|ref|NP_252410.1| probable transcriptional regulator [Pseudomonas aeruginosa PA01]
MNDASPRLTERGRQRRRAML
DAATQAFLEHGFEGTTLDMV
IERAGGSRGTLYSSFGGKEG
LFAAVIAHMIGEIFDDSADQ
PRPAATLSATLEHFGRRFLT
SLLDPRCQSLYRLVVAESPR
FPAIGKSFYEQGPQQSYLLL
SERLAAVAPHMDEETLYAVA
CQFLEMLKADLFLKALSVAD
FQPTMALLETRLKLSVDIIA
CYLEHLSQSPAQG
>_0060.000078_ NMUL_10JAN05_CONTIG12_REVISED_GENE79 nmul_10jan05_Contig12_revised_gene79
MTNANQRNQRKKQPALVRRR
LLDNGARLCVEQGVAGLTLQ
AVADAADVTKGGLLHHFSTK
QALIEEIFSERLQAFDTSIK
QAMKLDPEPSGCFTRAYITA
TLELIEKDDFIQWAALMMAM
LTEPGLKKRWTQWLEQSLEQ
HRDTDSAPEMRLARYAVDGL
WLAGLLDEEERVATKREALH
LHSQLIEMTRKP
>_0055.001801_ RGEL_26JUN05_CONTIG562_REVISED_GENEMPEA1171 rgel_26jun05_Contig562_revised_geneMpeA1171
MARMKFICDAERCIECNGCV
TACKAEHEVPWGVNRRRVVT
LNDGVPGERSISVACMHCSD
APCMAVCPVDCFYRTDEGVV
LHDKDICIGCGYCSYACPFG
APQFPTNGTFGLRGKMDKCT
FCAGGPEANGSEAEFEKYGH
NRLAEGKLPACAEMCSTKAL
LGGDGDVVADIFRTRVLTRG
KGSEVWGWGTAYGKPTGGAA
QPAAAEGGKS
>_0055.000870_ RGEL_26JUN05_CONTIG562_REVISED_GENEMPEA0239 rgel_26jun05_Contig562_revised_geneMpeA0239
MLYPELFKQLESVRWNMDKD
IPWDQFDASRLSEEQAQTVK
MNAITEWAALPATEMFLRDN
RDDSDFSAFMSVWFFEEQKH
SLVLMEYLRRFRPDLVPTEA
ELHEVRFEFDPAPALETLML
HFCGEIRLNHWYRRAAEWHD
EPVIKAIYETLARDEARHGG
AYLRYMKRALQKFGDEAKAA
FAKVGVLMASARRTAQALHP
TNLHVNERLFPRDTIQSRLP
DPEWLEAWLDKQIQFDAVWE
NKVVERILHNLSLLMERSFE
SVQELNRFRKEMTQKLAATA
AAASAAGGPPGTQPA
>_0053.003083_ MMAG_12JAN01_CONTIG3864_REVISED_GENE3100 mmag_12jan01_Contig3864_revised_gene3100
MHALTGGWGLDVPGHTPAEL
YALAADIESYPRFLPWCQKA
RVRSRDGDHLEVDNLFGLGP
MQARFISQAHQEPPERLTIT
SQDGPFRRFRLIWAFSAQGD
GCRVEAEYKMELRSPMLQSM
AAMTLPAMEHKVVQNFRNRV
REVYGR
>_0048.002503_ YP_015257.1 gi|46908868|ref|YP_015257.1| transcriptional regulator, TetR family [Listeria monocytogenes str. 4b F2365]
MITNESIMDATLCMMAKHGI
KGSTTRQLAEAAGINEATIF
KKFKSKDNLIHMTLEVQFES
MKAEINQFFDKDFESAKVFL
RQASQFISDIYEKYRDFMVI
SVREMGSKDMEFIDPSIVEY
LYERVNQKVKEMVPSKNSAQ
EADAISLILNSVILLIMVEK
VRDDIYKRPPTITTTADSLA
DVLLKLLK
>_0043.001227_ JANN_22DEC04_CONTIG22_REVISED_GENE1228 jann_22dec04_Contig22_revised_gene1228
MIAIFEPWLKASHRYTSAYL
ANSQSTGDDLSAFLSKYEID
RSVGVISLAQAPLFRDDEDE
AATRKADGAPQSVERVSMPT
PQRIRVLQTHPYVLCVGTLE
ARKNIWKIAQSWQRLANIDG
LSLPRLVFAGQPGWMIRDFE
RMMDATGYLSGWIETVERAS
DAELDALYKNCLFTIKASYY
EGWGLPIGESLAYGKTAVVS
QTSSMPEVGGNMVEYCDPNS
IDSIVAACRKLIDDPGHRKT
LEARISAASLRQWGSVADDL
LAALDAHVAETPRSDMQTPV
LS
>_0032.002026_ YP_010772.1 gi|46579964|ref|YP_010772.1| AMP-binding protein [Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough]
MSRFAPLDALLAERMKCDSP
PDAAALERWQMERLRATLEH
ARHSPYHAERLAGIAASSLY
SRHDLARLPFMEADILREAP
LKLLCVSQDDVARAVTFDTS
GSTGPPKRVFCTAEDIENTI
TFFSHGLLSFMQRGEALLAL
LPAERPASVGRLLGEAAGRV
GVRPLSASPEHGWDSIADMA
HREGVRAVVGSPLHVREFAL
AWHRAGFPSGAISTVLLCWD
AAPRALRALLAETLGCEVRH
HWGMTETGMGGALSCGEAGM
HLRENDLLVEVTDPVSGVPL
PDGTWGELVVTTLDRRAMPL
IRYRTGDRGRILPGTCPCGS
PQRRIDLVPGRLADERLLPD
GTPLRLIDLDECLLGLPDVV
EYRACLHEDAPAVLAVDVLL
RGDIPRLGPTMTAREESVAI
LTRLLSTASPIARAMRLGTL
ELRVAARDHLPPETLFAKRR
IATRCQASS
>_0030.002065_ DHAF_12NOV03_CONTIG1074_REVISED_GENE2351 dhaf_12nov03_Contig1074_revised_gene2351
MVDKEQTTQQRILQAAQEEF
LRLGFQNSSLRSIAKACGVT
TGALYGYYADKDALFEALVR
EEAETLYTIYLRAHQEFEAL
PPEQQLAEMTQQIEPRIWKC
FNYVYEHYDAFKLLICHAEG
TSYENYVHRLAEVEVESSTI
FLSCMENMGRRVTHIPDDLN
HMLASAYLTGFFEVVAHDMP
KEEAREYIERLTDFFSAGWK
NLLGLV
>_0019.003208_ NP_349655.1 gi|15896306|ref|NP_349655.1| Sugar kinase [Clostridium acetobutylicum]
MIIRAKAPLRISFGGGGTDV
EPYCNEYGGVVLNTTIDKYA
YCSIVPNNTDSIVVNSLDFD
MTVKYNCNENLVYDGKLDLV
KAALKRMNINKGCEVYLQCD
APAGSGLGTSSTVVVALLGA
MAKWKGVVLDQYALASIAYE
VERKDLKIDGGYQDQYAAAF
GGFNFMEVDGSDVVVNPLKI
NKGITNELQYNLLLCYTGNV
HVSANIIKDQVNNYVEKKEE
VVNAMHEIKALAYAMKKELL
RNNLNNFGSLLHYGWEMKKK
MSSRISNPQIDELYEAALKK
GALGGKLLGAGGGGYLLVYC
PYNKKHVVAESLEKMGGQLT
DWNFDLGGMQSWVVDDSRWN
YNEIAVATTEGKYKFGINTM
EDIG
>_0019.002352_ NP_348610.1 gi|15895261|ref|NP_348610.1| Uncharacterized protein, YIIM family [Clostridium acetobutylicum]
MMAKVVSVNISKKKGTIKQP
IEEGFFKINHGLDGDAHAGD
WNRQVSFLAVESIEKVGNKE
IGLGPGKFAENITTEGVCLY
KLPIGIRIEIGDVVFEVTQV
GKECHFGCEIRKKLGDCIMP
KEGIFAKVLQEGKIKTGDTI
KIIYR
>_0018.008978_ BFUN_06OCT04_CONTIG482_REVISED_GENE8979 bfun_06oct04_Contig482_revised_gene8979
VGIVVLTVPLIICARQRALT
RHLGGDDRSSHTAGSANLLL
IILTGALWHAILGRAGLDSP
PVVRCARHATGDLDGDTATR
SCRHPSELPPFLTMRDVSSN
STRPSATGLMWLDDPAIVAT
VVTLSAGAQRVVIAPEVGGA
LAAFYETTPDGPLHWLRPAA
PAAFAERDPLRMASFPLLPY
CNRIRDARFEFDGGTIDLAG
NDARFAHALHGNAWRHPWQV
GARTESSVELHFEHEPDSRL
RGDWPFRYRAQQRIELSGGA
LHITLSAQNLAARPMPFGMG
HHPYYPRTAQTRVYAEVGAM
WHADADVLPTHLGPHPAVAA
LREGMSADAFDLDNNFANWS
REATIAWPDEHRRLTMIADA
PFDHMVVFAPANEAQLCVEP
VTNTTDCFNAVGMREQVGGC
VLQPGEKIAATVKWTPHKN
>_0018.007661_ BFUN_06OCT04_CONTIG482_REVISED_GENE7662 bfun_06oct04_Contig482_revised_gene7662
MHTTWCACSTGWHAQHHDGM
QDAPPPTPSSKEIRSMNAPA
SPIASAATLRHHFAHVVLPI
WRGPGFNSAMHLPYEAVSAK
AGHSPMPVERYRAMACARQL
FVFSQAGEAAHAHVLFEALL
HYFKDRQRGGWFYSIDAHGQ
PLDTTKDLYTHAFLVFACAE
YAARFGSGDALDVVRSTSAL
IETRFAAPHGLFNASLNADF
STVTGTPVQNPLMHLTEAWL
AARESTQDSAFDSALRKLAN
AIERTFVHAPTGCIAELPVG
ADDNRLEPGHQFEWFWLARQ
ASSVLNGTALDDALSRAFIF
AQQHGVDPATGGVCASLDET
GQVRDATQRIWAQSEYLRAL
ATRDHDAAGAAALSGQIGRF
RQRFLHPLGWRECMTATGEV
SRADMPSTTPYHLATAYAAL
PVEENAARNVAAA
>_0018.005459_ BFUN_06OCT04_CONTIG482_REVISED_GENE5460 bfun_06oct04_Contig482_revised_gene5460
MTIVSAFLLPGSPLPQLRPD
ITPWGRIREGLSRAGKALAE
SKPDCVLVYSTQWFAVLDQL
WITRARSTGVHVDENWHEFG
EQAFDIHSDCALAQRCVDAC
NAAGIKTRGVDYDQFPIDTG
TITATTLMGFGSASLPVVIA
ANNLYHSAEQTEQLGAIASA
ALQDKRAAVLGIGGLSNSAF
RENIDLEKDHILSEADDKWN
QRVLALMESGDIEAIRAILP
QYSTEARPDMGLKHFYWLLG
AMNASFKKATVHEYAPLYGS
GGAIVQFDVQ
>_0018.005454_ BFUN_06OCT04_CONTIG482_REVISED_GENE5455 bfun_06oct04_Contig482_revised_gene5455
MHNATGQSPRLRLAIAPGAP
SPQLSALLALQRAEEPDVAL
AFFEVSGRDLHAGLHDGRYD
AGVSIQVSSDAALKAQPLWA
ECMAVAMPLRFPLLDQATLT
IADLLDFALYRWQAEICSKL
DERLSTPLPTGRQNIRYVTS
FGLLATWVAAGYGVGVSAQS
RIEHAHRWGITMRPLIDGPY
EIVTHLQRPQEPTSSVVERF
ERRALQVARASAA
>_0017.000180_ NP_810116.1 gi|29346613|ref|NP_810116.1| putative UDP-N-acetylglucosamine 2-epimerase [Bacteroides thetaiotaomicron VPI-5482]
MVANRNLNQTGTESENVYYV
GNILVDTVRFNRNRLLKPVW
FSVLGLQEGNYLLLTLNRRV
LLNNKENLRKLMQTMIEKAA
GMPIVAPMHTYVRNAIKDLG
IEAPNLHIMPPQNYLFFGYL
INKAKGIITDSGNVAEEATF
LGIPCITLNTYAEHPETWRV
GTNELVGEDPAALAQAMDTL
MKGEWKKGELPERWDGRTAE
RIVQILTSK
>_0017.000134_ NP_810043.1 gi|29346540|ref|NP_810043.1| hypothetical protein BT1130 [Bacteroides thetaiotaomicron VPI-5482]
MMNTDNRLLTRESSEHIREF
FSTVERLSVSMERLFAGRSP
AMAGENFYTDRELAEKLKVS
RRSLQQYRDSGLLAFTRLGG
KILYRSSDIEKLLDGCYREA
RTRPEEL
>_0014.000967_ YP_109327.1 gi|53720341|ref|YP_109327.1| putative AraC-family transcriptional regulatory protein [Burkholderia pseudomallei K96243]
MRPAGPRTRARLYTRTIMHA
PSPPPLDARLSVPAADFVGG
EVPFGLQSVCRTLAEANAKL
ERFAWLGDHLAIAEWTRVTD
ESETVYAQPGHHTLSCYLDG
GYRTERQKIARYGAPSLLCA
LPGDHESRWWVRGEMHFVHL
YFLPEHFARRAVRELDREPR
ELKLADRTYFEDARVAALCR
SLALERWDDADGRLRVNETA
HEVLSLLLRGQSMTGAGAPF
KGGLAPAVRRRVRDYIDTYL
AQPMTLGELAQFASLSEYHF
SRMFSVSFGRAPHAWIAEQR
LARARTLLRTTSLPLAQVAA
QCGYANAVHLSHRFRDTHGA
TPGAYRRAMQAA
>_0006.001973_ NP_890958.1 gi|33603398|ref|NP_890958.1| MarR-family transcriptional regulator [Bordetella bronchiseptica RB50]
MIDTPDLETRAAPEDHHALR
LWLRMLTCCNLIESEIRSRL
RTEFDTTLPRFDLMAQLQRA
PKGMKMGELSRHMMVTNGNI
TGITDQLEKEGLVVRTKVES
DRRSSVLKLTPQGKRTFARM
ARAHESWVTGMLDDLPEASR
HAMYKALGELKLQVVAHRAL
AQRDGAS
>_0005.003589_ YP_321884.1 gi|75907588|ref|YP_321884.1| Glycosyl transferase, group 1 [Anabaena variabilis ATCC 29413]
MKILVASHTYIVDLNCQKLR
ALSQLEPGIEVTVVVPKTWK
PGGVQNKIIETQYRDEGAFK
IVPVSNFSQNHQGLLTFGAD
LVSLLREFRPQVIQVEQGSR
GLAYAQMIALNQLLNLKAKN
IFFTWWNLPYELKLPIALLE
KYNLNNSHGIISGNQDGAEV
LRQRGYQGKIKVMPQLGVDE
TLFTPQAQPELAAKLGIKSD
EFVIGFVGRFVPEKGLLTLL
QALTKLPLDKTWKLLLLGRG
PLQEELIKIAAENHIQDRVI
LIESVPHDEVANYINLMSTL
VLPSETTYNFKTLTSVGWKE
QFGHVLIEAMACQVPVIGSD
SGEIPYVIGDAGLVFPEGDV
QALANCLLQLIEQPNFTKEL
GERGYQKAMVKYTNKALEAI
YKVNLKVSIKVSLEV
>_0002.001421_ NP_147267.1 gi|14600746|ref|NP_147267.1| hypothetical protein [Aeropyrum pernix]
MGEGLKETLEFLKVETSKCI
YCGFCEPVCPTLPFGRHRGY
GPRGRVFSARLVALDGKATE
GDLESLYSCLLCGACMEVCP
ARIDIVSVVREARALITGMN
RL
>_0116.001812_ YP_193741.1 gi|58337156|ref|YP_193741.1| diaminopimelate epimerase [Lactobacillus acidophilus NCFM]
MVNLLKVHGSQNHFFILDQT
ELDNSLTDKELRAFTKKITN
PKTGILNGADGVLVINKSVR
KNSLAQMRVINEDGSEASMC
GNGLRTVARYLSEKYQKDHF
LIDTMNASLRVHKEENFAKG
VPAYSVEISPVRFNKEALPF
TNLGHNRLIDTFVPEIYPGL
RFTSIAVPNPHLINFVNQEQ
IAGPILGNIGKRLNDNNPYF
TDGVNVNFAQILDKNKLFVR
TYERGVGFTNACGTGMSATS
LALLLTHPDMVDINSKIDVF
NPGGMVQTKVHYDDSTYWIE
LTGNATITHHIIISKSDLRN
NNFANVQISETKEQQAYEQF
IDNLPKFNSITTLA
>_0115.004016_ YP_001337498.1 gi|152972352|ref|YP_001337498.1| hypothetical protein KPN_03844 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
MKQVGLRIDVDTFRGTRDGV
PRLLELLGRHGIQASFFFSV
GPDNMGRHLWRLVKPKFLWK
MLRSRAASLYGWDILLAGTA
WPGRRIGAGNEAVIRAAAES
HEVGLHAWDHYSWQAWSGVW
PQERLALEVERGLLELERII
GRPVTCSAVAGWRADQRVVK
AKESFDFLYNSDCRGTRPFL
PQLGSGVSGTVQIPVTLPTW
DEAVGTAVDIAGFNRYLLDC
IHRDAGVPVYTIHAEVEGIA
YADQFNELLTMAAEEEIQFC
PLSQLLPADFSELPSGKVVR
GELAGREGWLGREQLLTSGI
>_0112.000110_ YP_909941.1 gi|119026096|ref|YP_909941.1| hypothetical protein BAD_1078 [Bifidobacterium adolescentis ATCC 15703]
MDFHDARTCVIFGAGDYYDE
TPAIPDDAFVVAADGGLDHA
RAFGIDADFVVGDFDSITGD
RPTQNDRTIALPSEKDDPDL
LSALKIGWLRGARTFHIYGA
LGGRIDHTISNIQLMALLAD
RGATGYLHGDGSIVTAICDG
ALDFPADDAVAGRMVSVFSH
SDISTGVSETGLKYELHHAD
MSSTRVNGLSNEFLAGRPSR
ITVEHGTLIVTFPIEAPLPH
VARWHGFSGDLGALDTDVSS
ALVEPSGR
>_0111.000969_ YP_211965.1 gi|60681821|ref|YP_211965.1| putative glutamine synthetase I [Bacteroides fragilis NCTC 9343]
MMNQELLMSPNRLVTFLQKP
AAEFTKADIINYIQQNEIRM
VNFMYPAADGRLKTLNFVIN
NASYLDAILTCGERVDGSSL
FPFIEAGSSDLYVIPRFRTA
FVDPFAEIPTLVMLCSFFNK
DGEPLESSPEYTLHKACKAF
TDVTGMEFQAMGELEYYVIS
EDDGLFPATDQRGYHESGPY
AKFNDFRTQCMSYIAQTGGQ
IKYGHSEVGNFMLDGKVYEQ
NEIEFLPVNAENAADQLMIA
KWVIRNLAYQYGYDITFAPK
ITVGKAGSGLHIHMRMMKDG
QNQMLKDGALSDTARKAIAG
MMQLAPSITAFGNTNPTSYF
RLVPHQEAPTNVCWGDRNRS
VLVRVPLGWSAQTDMCALAN
PLESDSNYDTTQKQTVEMRS
PDGSADLYQLLAGLAVACRH
GFEIENALAIAEQTYVNVNI
HQKENADKLKALAQLPDSCA
ASADCLQKQRTVFEQYNVFS
PAMIDGIISRLRSYNDATLR
KDIQDKPEEMLALVSKFFHC
G
>_0110.002590_ YP_001299074.1 gi|150004330|ref|YP_001299074.1| hypothetical protein BVU_1776 [Bacteroides vulgatus ATCC 8482]
MAIKFEFYESPNTIGTRKKR
YHARVVNWQRINTDYLAREI
QYGSSLTVADIKATIISLSE
KLAYYLKDGARVHIEGIGYF
HISLTCPETRTPSSTRANKV
KFKSVTFRADKYLKHQLSDV
KTERSKYKPHSMPVTKESID
EALTEYFLTNSVLTRRKFES
LCGLTRATAGRYIAQLAKDK
KLRNISIPRNPIYEPMPGFY
GKEKLPEPENETENVSATND
TDLTIK
>_0095.003740_ NP_462614.1 gi|16766999|ref|NP_462614.1| putative hexose transferase, lipopolysaccharide core biosynthesis [Salmonella typhimurium LT2]
MIKKIIFTVTPIFSIPPRGA
AAVETWIYQVAKRLSIPNAI
ACIKNAGYPEYNKINDNCDI
HYIGFSKVYKRLFQKWTRLD
PLPYSQRILNIRDKVTTQED
SVIVIHNSMKLYRQIRERNP
NAKLVMHMHNAFEPELPDND
AKIIVPSQFLKAFYEERLPA
AAVSIVPNGFCAETYKRNPQ
DNLRQQLNIAEDATVLLYAG
RISPDKGILLLLQAFKQLRT
LRSNIKLVVVGDPYASRKGE
KAEYQKKVLDAAKEIGTDCI
MAGGQSPDQMHNFYHIADLV
IVPSQVEEAFCMVAVEAMAA
GKAVLASKKGGISEFVLDGI
TGYHLAEPMSSDSIINDINR
ALADKERHQIAEKAKSLVFS
KYSWENVAQRFEEQMKNWFD
K
>_0089.000487_ NP_344893.1 gi|15900289|ref|NP_344893.1| UDP-N-acetylglucosamine 2-epimerase [Streptococcus pneumoniae TIGR4]
MKIKTDYSDIHFKDNGKLKL
LIIVGTRPEIIRLSSVITKC
RKYFDVILAHTGQNYDYNLN
GIFFDNLGLDTPDVYMDAVG
DDLGATVGNIINTSYKLMNQ
IKPDALLILGDTNSCLSAIA
AKRLHIPIFHMEAGNRCKDE
CLPEETNRRIVDVISDVNLA
YSEHARKYLHECGLPKERTY
VTGSPMAEVLHKNLSAIESS
DIHERLGLKKGGYILLSAHR
EENIDTDKNFISLFTAINQL
AEKYNMPILYSCHPRSKKRL
QESGFKLDKRVIQHEPLGFH
DYNCLQMNAFVVVSDSGTLP
EESSFFTSQGYPFPAVCIRT
STERPESLDKAGFILAGIDE
NSLLQAVETAVSLAQDEDFG
LPVPDYVEENVSTKVVKIIQ
SYTGIVDKIVWRKS
>_0088.000521_ NP_717484.1 gi|24373441|ref|NP_717484.1| NodD transcription activator-related protein [Shewanella oneidensis MR-1]
MSVEIDKLLSDFQSLLAPKI
FDPKFAQGTYVIAATDYAQQ
VVLPKLISTLRQESPNLKII
IRDFEIDKLHDLMESGSVNL
AIAFPDYIPDSYPMIKLFEE
YHVCVTSNHSTIAKVNTSLA
EVAAYPCIIASPSRPNFKDS
IDEWFKQFGLERNVVVSAPC
FSVVPLYLQATDSIAFLPSR
AIQALGLIEVVLDKKPNPFD
IIAAWHPRYNDDALQKWIVS
KLEAAYI
>_0087.000094_ NP_720607.1 gi|24378652|ref|NP_720607.1| putative transcriptional regulator (TetR/AcrR family) [Streptococcus mutans UA159]
MSNFEKRNRKMAEKNIRKPK
QERSIEKRNKILQVAKDLFS
DKTYFNVTTNEIAKKADVSV
GTLYAYFASKEDILTALLKR
YNDFFLTTIFADINSQDSLD
RFKKNPKEWLNVLINQLLAA
EDKIFHAQIEMLAYAIPQAK
ALLEEHNNNLKNLTYKCLLY
YSDQAANPSFKTLSLVVFDF
ISALVDELLYHEHTQEEAHQ
IKKTGIDSLDLIIKSYL
>_0076.001353_ SAMA_14OCT04_CONTIG103_REVISED_GENE986 sama_14oct04_Contig103_revised_gene986
MARRKEHSHEQIREMAISEV
ERWLETEPLQDLSLRKVAQH
IGYAPSTLVKVFGSYPYLLL
AVARRALEALDTTFAGHLGA
ARDNSSFNNLPLDALKAKTA
LNAMAQSYGQFALSSPGRFS
LVFELKLPAEATLPSDHSAL
IESLLQRPEACLSAMFPSLG
AAQLKYQTRLLWAALHGLVA
LSLQDKLFLLEHSLAELLTV
QLGSQLHAISVLDAQHTEVR
P
>_0073.002874_ YP_296283.1 gi|73541763|ref|YP_296283.1| Phosphoribosyltransferase [Ralstonia eutropha JMP134]
MNQPTNDDENLWVSWDEYHR
LVARLSLNVHESGWKFDKIL
CLARGGLRVGDQMSRIFDVP
LAILATSSYREAAGTQQGDL
DIAQYITMTRGELTGKILLV
DDLVDSGVTLERVGRHLRER
YPAVTEVRSAVLWYKACSKV
QPDYHVTFLPSNPWIHQPFE
EYDTLRPHNLSAWLKRGKRS
QDGQDSAQA
>_0069.000545_ NP_895641.1 gi|33864081|ref|NP_895641.1| Creatininase [Prochlorococcus marinus str. MIT 9313]
MSSTLPSAVSSVNAIRLALR
SWPEVDDYLNHCKGVILPLG
STEQHGPTGAIGTDALTAEA
LALEVGRRTGVLVTPTQAFG
MAEHHLGFAGTMSLKPATLL
ALIHDLVISLANHGFERIFV
INGHGGNVATTKAAFAQAYS
SAISNDLPVASKLRCKLANW
FMAGSVFHAARELYGDQEGQ
HATPSEIALTLHIEPSLLSK
QRPLPEPAPAGPIHGPEDFR
RRHPDGRMGSNPYLAKPEHG
ASLLETAATALSEDLTSFLT
AA
>_0066.000208_ NP_905511.1 gi|34541032|ref|NP_905511.1| glycosyl transferase, group 1 family protein [Porphyromonas gingivalis W83]
MNPPKRLLVIHRALAPYRIE
LLNTLSAAFDTHIYFEFASP
IEQRFDAGELAKRVHFQSSV
LPPAPKIPGLKNFRPYAASL
VRSLRPDVVLCSEFNLLTLT
LTAASRLFSPKTKLYVLCDD
NEQMAEAELHYGRGLKHRML
SYVEGVILCDSRACDLYASR
FATLDRERFVYLPIVQDEKV
LRPLYEQVFGIGRDLRHALI
PAGARMILYVGRLSEEKNLP
ALIDNLSTLPDDVHLVIVGD
GPMQSALMNQVQATGHPERI
IFAGKKEGAELYAYYTQADC
LVLPSMRECFGSVVNEALIA
GVPVVCSDIAGASCLVTESN
GRTFSPMLPNALSQACNDLL
GSIAPFCGDSLRPSLMPFTF
ERAIAPVLSLLSR
>_0063.003827_ NP_251716.1 gi|15598222|ref|NP_251716.1| conserved hypothetical protein [Pseudomonas aeruginosa PA01]
MRRWNGWGEESTVVELPDSA
RGFLAELVGQGARLPDASLE
AALAKVPASRLEADPRYSID
PRERLLHARGQSLPDWLAMR
EGDFGVYPDAVAYPETAEQI
RELLALADSRDLQLIPYGGG
TSVAGHINPQASRRPVLTVS
LERMNRLIDLDRESLVATFG
PGAAGPQVESQLRALGYTLG
HFPQSWELSTLGGWVASRSS
GQQSLRYGRIEQLFAGGTLE
TFAGPLEIATFPASAAGPDL
RELVLGSEGRFGIISSVKVR
VSPLAEDERFYSVFLPNWQQ
ALQATRELAQARVPLSMLRL
SNAVETMTQLALAGHPGQIA
WLEKYLALRGAGEGKCMLTF
GVTGNRRQNGLSLSQAKALL
KRFGGVFTGTLLGRKWAQNR
FRFPYLREALWQAGYAVDTL
ETATDWSNVDGLLQKIEASL
RDGLAAEGEKVHVFTHLSHV
YGEGSSIYTTYVFRPAASYA
ATLERWKRLKHAASQAIVDN
RGTISHQHGVGKDHAPYLPR
EKGELGVAALRAMAGHFDPA
GRLNRGTLLQD
>_0062.001500_ OOEN_16SEP02_SCAFFOLD6_REVISED_GENE1814 ooen_16sep02_Scaffold6_revised_gene1814
MNFFINSNMQKNKSGIEHAE
LKRAALFRDHHESFKIVLRD
WSQTLHKDIKDSGLSDAEVI
NMFDYFQGTEKVTEKNIQAK
DIDFGVAVDLYENDPKNNRV
LAWQVIKKINGESQRRLLGR
INYFSFAKDRISSTEMFDAF
GNLYAVNYYDIRGFLSLTQW
YTPDNKIGTESWQTLDRRSV
LESFNKFDAKGEFKKSGWRL
VDKNGSIYTFQTIEELTKHF
LDSINFDYSSQERGNVFILD
RTHLGDWALRDLKKPAYTVI
HLHNSQAGNAEDEMHSILNN
HYEYSLWNTNDYDAIISATS
KQTADVAKRFKPQARLFTIP
VGVIPSKHFQEQRIPMSDRF
SHKIVALARIAPEKRLNDLV
KAVGIAKKEIPDISLDLYGY
RDSSDNFKAYQDIKKAVEDY
RLADEVKVHGYTTNVSVIEK
KAQIFAVTSIMEGFNLSMME
ALSEGDVGLTYDVNYGPNEL
VVDGENGYIVPNGDYHALAE
KIIFLFKHPDELQKKSERAY
ELSKRYSETKVWQDWRELLD
DAQDKWPEKISHYKSPLLFG
LAENGGKL
>_0056.002221_ SARO_25NOV03_CONTIG29_REVISED_GENE2364 saro_25nov03_Contig29_revised_gene2364
MQRTKVKSASRTLEVLELFM
DERRPLRLNEIYKALNYPQS
SATNLLKSMVLMGYLNYNRA
NMTYLPTMRVTALGSWLPSM
INREGGLVSLVDEIQRRTDE
TVGLVAQNDLYIQYIILKTP
GHEFKMAPNEGTMRLMVDSS
SGLALMSRMRQREIDKIYRY
SCHYGLGGETLPQFEDLMRE
VRWTRQVGHAYVPKRPTPQL
SSIAMPLDENLYGIPLAIGV
GGMVDRISRAKQDILDVMSE
AISAFKARQEQEDAREHEAL
LNAA
>_0056.000408_ SARO_25NOV03_CONTIG24_REVISED_GENE437 saro_25nov03_Contig24_revised_gene437
LRPRVWHDGRMERGGWVYIM
ANRYRGGMYVGVTSDLIRRV
WQHREGVGSSHVDDFGKTRL
VYAERHEEIEPAIAREKLVK
KWRREWKFALIEAGNPDWLD
LWEQWYPAAMALRGVVER
>_0054.000113_ NP_988305.1 gi|45358748|ref|NP_988305.1| Hydrogen uptake protein:Hydrogenase maturation protease HycI [Methanococcus maripaludis S2]
MESVQGTIKSFINNSNKIAI
LGIGNYLKSDDGFGVYVVES
LVKNYSKTHENLSLEKEINS
VNNRLILMNCGVVPENFTDV
IKRENPDKIIMVDAALMHQE
PGTLRVVESDEISETGFSTH
SLPLSIIIKYINAHIDTEIL
IIGIEPTDLEFGEPLSGLIK
EKADEFSKILIEEIDSFLL
>_0052.006342_ NP_102541.1 gi|13470972|ref|NP_102541.1| hypothetical protein [Mesorhizobium loti]
MADFQKIRLRAAKRKGGEAE
LATLLGPVPDNAAVADIPDD
RILSTMAERIFAAGFVWRVI
EQKWPGFEEAFLRFEPKRLL
FQPDDFWHDLTSDQRIVRNP
QKIKSVRDNAAFVERVSKEH
GGFGEFLANWPAGDQVGLMA
YLGKHGSRLGGNTGQYFLRW
LGWDAFVISADMAAALCDAG
LDIAESPTSKKDLDKIQAQI
NQWVADTGLPRRHISRILAM
SIGENHSPQSLREYMGDD
>_0052.000022_ NP_102874.1 gi|13471305|ref|NP_102874.1| hypothetical protein [Mesorhizobium loti]
MSARQRDENPAGIHLPLDPL
PGHSSRGRLERVLRRGEFAV
TTELNPPDSADPEDVYNRAK
IFDGWVDAINAVDASGANCH
MSSVGICALLTRMGYAPIMQ
IACRDKNRIAIQGDVLGGAA
MGVANMLCLTGDGVQAGDQP
GAKPVFDLDSMSLLETIRIM
RDNGKFLSGRKLTTPPQVFL
GAAVNPFAPPFDFRPIHLGK
KIAAGAQFVQTQYCFDVPMF
RTFMQKARDLGHTEKVFVLC
GVGPLASAKTAKWIRSNVPG
IHIPDAVIKRLEGAQDQKKE
GKQLCIDIINEVKEIPGISG
VHVMAYRQEEYVAEIVDESG
VLKGRQPWKREIRRDDQMVA
DRLDHILHDEITETQVDMVK
TAH
>_0043.002020_ JANN_22DEC04_CONTIG25_REVISED_GENE2021 jann_22dec04_Contig25_revised_gene2021
MRAARLLQILLILQNRGRQT
SVQLGEELEVAPRTILRDVD
AMSEAGLPIIVHQGNRGGIE
LGFNYRTRLTGLAKEEAQAL
GLILGAANPMIATLGLSQPA
AQARAKLVESLPDKTRDHVA
AMMAQFKLVADDPVDDPRIR
ALGLAIQAQTEVRIRFASRS
EQLIHPVVLEMRGPQWRVRD
GSTDSWIAMTDWGRINISAK
RFASAKVD
>_0043.000301_ JANN_22DEC04_CONTIG16_REVISED_GENE302 jann_22dec04_Contig16_revised_gene302
MAVNTYCMEPQKSEPNGQAS
KSGTDRLGPEAWIDAAYVRF
RKGGVSAVRVDPIAKGLGIT
RGSFYWHFKDRAALLHAILK
RWREEETERTIAENEAAGGD
ASTRLLRLLHTCSADDGRLE
IGMRDWAAQDEDAHKEVRLI
DTRRIQYMATLAREAGIRSN
AAEARCRVAYLAWLGSYVDA
TVTSREELRAHMNTLWQMVM
AK
>_0041.000331_ NP_207019.1 gi|15644849|ref|NP_207019.1| nifU-like protein [Helicobacter pylori 26695]
MAKHDLVGSVLWDAYSKEVQ
RRMDNPTHLGVITEEQAKAK
NAKLIVADYGAEACGDAVRL
YWLVDESTDRIVDAKFKSFG
CGTAIASSDMMVELCLNKRV
QDAVKITNLDVERGLRDDPD
TPAVPGQKMHCSVMAYDVIK
KAAGMYLGKNAEDFEEEIIV
CECARVSLGTIKEVIKLNDL
KSVEEITNYTKAGAFCKSCV
RPGGHEKRDYYLVDILKEVR
EEMEAEKLKATANKSQSGEL
AFREMTMVQKIKAVDKVIDE
NIRPMLMMDGGDLEILDIKE
SDDYIDVYIRYMGACDGCMS
ATTGTLFAIENALQELLDRS
IRVLPI
>_0036.001389_ EXIG_01APR05_CONTIG280_REVISED_GENE1390 exig_01apr05_Contig280_revised_gene1390
MKKTGTALLIVDIINKMDFE
GAEDLLAETRLILTSLVELK
HICKSYDIPVIYVNDNFGLW
QENVDQIVEECRGGLGDPFV
QALHPQQDDYFIIKPKHSGF
FGTQLDILLKHLDVSRLIIT
GITTDMCILFTANDAYMREY
EIWVPQDCTAAETTEAKNHA
LEILHTTLSIDCSDSTTVSF
D
>_0031.000071_ NP_284934.1 gi|15795183|ref|NP_284934.1| putative transposase [Deinococcus radiodurans]
MVGERSVWCGTVLSISWMPY
GGNPNSSWRSWRCSSRLFAR
QERLKVKLSPTELMAILQYV
LSAVPLRKTQRNFLTVLLSV
FLAVPGQLNALNLSRYAACS
ESTIRRWLHRSDDGAIPWGA
LHQATVSTAIESGLISPLCV
LAIDASFHRKAGQHTAHLGS
FWNGCAARTERGIEQSCCTL
IDVQHRQALTVDVRQTLTGS
EAPTRLEQTADQLDDVLLDL
RTVQQLDLAAVVADGNYAKE
PIVETVTGHGLPFISRLPRN
ANLNDLYTGEHPRRRGRKKK
FDGKVDFSDLQRFDLVSARP
TERVWTQVVWSVQWAREVRA
VVIQQIGKKGQVTGYAVLFS
TAVTMPAHEVMALYRSRFEI
ELIFRDAKQFLGGQDVQLRS
QQGIEAHWNVVLLTLNLCRL
EALRAAGGGQDLVFSLEDMK
RRAYNALLAQVILSNLDLSA
RFEE
>_0030.002911_ DHAF_12NOV03_CONTIG1085_REVISED_GENE3323 dhaf_12nov03_Contig1085_revised_gene3323
MKKSNRQLQKVQTKETLLNK
AYQLFSSQGIMNTRMSDIAQ
AAGVSHGTVFAHFQTQEMLI
TEVIETYGEKIARRTHEAAG
TCEHMEELLAAHLAGIGEFE
PFYARLVIENRLLPPEARDV
WVSIQSAISFHFSQVAQREI
GSGQSIDLPLYFLFNTWVGL
VHYYLVNGDLFAPEGNVVGR
YGDTLVDHYMKMIRRDGGKG
GEKE
>_0030.002299_ DHAF_12NOV03_CONTIG1077_REVISED_GENE2617 dhaf_12nov03_Contig1077_revised_gene2617
MKGLGWAKCPGTCGEWVQGA
KDGTPFLVGCPINRFVEAKA
EILFSESVARDNSGHQQELK
DWIWQLPEGKEKTRQALERF
ARIQNLPPLTGKIHMQSQLL
IGKGMASSTADMTAAVSAVA
QALAIPWQSEEQARLALAIE
PSDPIMFPGVTELAHGDGTY
IKSLGPKISAQLLMLDGGGF
LDTLAFNARRDLPGHYRKYE
PKIKNALALFYEGMAQRDLG
KIAQAGTISARCNQDINPKP
FFEEFLSWTLGKGGLGVITA
HSGTLLAGIFPPDLSTTEKK
NLERESRIQFRPVIVEWVET
YDGGTEGGVMNAWRKSVGRL
GTVWETELY
>_0028.000525_ DDES_06JUN05_CONTIG143_REVISED_GENEDDE0526 ddes_06jun05_Contig143_revised_geneDde0526
MAKHATPKLDQLESGPWPSF
VSDIKQEAEMRAKNPKGLDY
QIPVDCPEDLLGVLELSYNE
GETHWKHGGIVGVFGYGGGV
IGRYCDQPEMFPGVAHFHTV
RVNQPAGKFYTSEYLRKLCD
IWDLRGSGLTNMHGSTGDIV
LLGTTTPQLEEIFWELTHDL
ETDLGGSGSNLRTPAACMGE
SRCEYACYDSQQMCYDLTQE
YQDELHRPAFPYKFKFKFDA
CPNGCVASIARSDFSVIGTW
KDSIKIDQDAVAEYVAGKIA
PNAGAHSGRDWGKFDIEAEV
VNRCPSKALSWDGSKLSVNA
KDCVRCMHCINTMPKAVRIG
DERGASILVGAKAPILDGAQ
MGSLLVPFIEAKDPWDEVKE
VIENIWDWWMEEGKNRERVG
ETIKRLSLQKLLEVTNTAPQ
PQHVVEPRSNPYIFFKEEEV
PGGWDRDITEYRKRHQR
>_0024.003276_ CHUT_08NOV04_CONTIG199_REVISED_GENE771 chut_08nov04_Contig199_revised_gene771
MKVLMIGPFPPVVNGVTVSN
DFLYHSLTSQGDQVNRINTE
TGKIASMQGDKISLHKILTF
LSIYKNIFKVSGKDVVYMTI
GQTFWGVVKYSPFICYCWLA
GIPYVFHIHGGYLSKSYLNM
SRRKQRIIKVLFSKSSCVIA
LSESLAKDIQNIFTKVNIAV
VENFYDQELIHPALERTVHS
VPHFLFLSNLMLGKGILEFL
DALIILQDAHKLHFKVALAG
NIERGMQAEIQKRIDRLKED
KVYFLGLADLPKKKELLYWS
DIFVLPTWYIMEGQPISIIE
AYVTGNVVVSTHQGGIEEIS
GYDTFFKTEAQNPALLAEVL
FNSVQQLPQLKQAIEQTKKT
TQIRFNSNRFVEEIKEVLLK
K
>_0024.000568_ CHUT_08NOV04_CONTIG199_REVISED_GENE151 chut_08nov04_Contig199_revised_gene151
MSEIKAKDKHAKDNRVKKVG
TILVSQPKPTDEKSPYYVLA
EKYNLKIDFIPFIQIEQVDL
KEFKKQKIEILAHTAVIFTS
RNAIDNFFRICTEAKIEVPA
EMKYFCITEQTANYLQKYIV
IRKRKIFVGKKTASDLEEVI
KKHKTEKFLYPCSDIRKDDI
PMFLSQNGFTFSEAVFYKTV
ASDLSHLADVNYDIITFFSP
SGISSLFVNFPDFEQKATRI
AAFGPTTAKAVHDAGLILDV
EAPLPNAPSMTGALEIYIKK
ANNIK
>_0022.001274_ NP_939648.1 gi|38233881|ref|NP_939648.1| Putative DNA-binding protein [Corynebacterium diphtheriae NCTC 13129]
MAPAKKVETRSTDGETRRHI
MLIMLKEGPVTATQLGQQLN
LSATGIRRHLDILLDEGFAE
ISSVRRVACEKSRGRPAKAF
KLTASGRSQFGHEYDSLAAE
ALATLKESGGEAAVRAFARK
RVEKILADVHVPDNIDDNQL
AEVATQLVEAFSNNGYAATI
NNAANGVQICQHHCPISGVA
ADFPELCEAEHEMIAKILGH
HVQPLASIADGHDICTTNIP
ITPILTPRKNTPTERSGS
>_0017.003354_ NP_811247.1 gi|29347744|ref|NP_811247.1| hypothetical protein BT2334 [Bacteroides thetaiotaomicron VPI-5482]
MEVITFESEAYKALVGKIEK
IAGYVAEAQLPSEEKKETWL
DSNQLAEALGISTRTLQRLR
DENLISYSMLRGRCMYKLSE
VERCLEERTIRCKPQTLEDF
RKNYLTRTGNDKKG
>_0016.004176_ YP_441783.1 gi|83721074|ref|YP_441783.1| transcriptional regulator, AraC family [Burkholderia thailandensis E264]
MTVSGVANVAHALRQYASIN
PNRLTNRPMNDRLKGLLARF
ELHARVFHFGTLPGASTFDI
CADGFHMHLVRTGAVCVTGG
TLGLHAVPEPSAVFIGRPGK
YRIEARGDAPVEILSAAIEF
GLGDENPLLRGLPDLLAIPL
ASMSPLDGVQQALFAEASAP
ACGHDTVINRLTEVLVVQLL
RFVMRNRLVASGSLAGLSDA
RLAKALNAVHADPALSWSLE
RMAAIAGMSRSRFAAHFADT
VGLPPGEYLLQWRVGLAKTL
LRRGYAVKEIAPEVGYGSAS
ALTRAFAQCTGHAPTDWLAR
ASDAPRATGTMPDIDVRAA
>_0016.003461_ YP_443264.1 gi|83720031|ref|YP_443264.1| Aldose 1-epimerase family [Burkholderia thailandensis E264]
MPNSVRAIAVARSMLAPCWD
RSGTINMTGPGHYPYSLLFL
TFSVSRMCAMHSAPARAHDE
LAPAARPVACRTDARAPRRG
DSAILGDLPWKTSTPATMPS
FQNQDILELTDGASLARIAP
EAGGRLLSWSIGDASIVFWP
DAADWSNPAKIRGGNPLLFP
FLGRHRVDGRIGFWRDGAGV
VRELPMHGFARDLPFDSQAD
ADGRGVTLSLHGSERTHAGY
PFEFRFAARYRLVDERTLDV
ALSTTNLGDAPLPHYPGHHF
YFALPHAERASTVLELPPTR
RRRQLDDGSISAPEPGSSRY
TLDDPAILDRFHCLDGIPAE
PVRVLMPGRRHAIEIDLNRP
GSVPWYAVTTWTEAPGSNFY
CIEPWLGLPDAIHNGLGLRH
VAPGATETAALRIRVTPLA
>_0016.000522_ YP_438396.1 gi|83716911|ref|YP_438396.1| flagellar hook-associated protein 3, putative [Burkholderia thailandensis E264]
MRITSNQYHSIMAQVNRQAT
AGLMDTQIRMATEKRILRPS
DDPTGAVRLALLVQADATLD
QYRATGAMLNNRLQHSERVM
SGIVDQLQNEAVKHLGLAMD
GSRSPEDLSAYAQVLASVRD
TLLQSANARDSSGNYLFSGT
AITTAPIRFDQAAPAGSRYT
FEGNLEKQTAVVGDGVTEVA
NDNLAEMADALNALDEAIAK
MSEPDANPNDPAYRDVLGRV
TDTIESVLASVNAKIGQMGS
AQARLQMLDELHESAQIVGN
QAALDVGKISPEEVFTDYQS
YMVALQASQKLYAEVTQLTL
LNVL
>_0015.000075_ NP_388932.1 gi|16078115|ref|NP_388932.1| similar to hypothetical proteins [Bacillus subtilis]
MNTDHTKRNLFELYAELIHQ
QEKWEGLIKAFLSDELRKLD
VEHGSKSQLTMTEIHVLSCV
GDNEPINVTSIAEKMNTTKA
TVSRISTKLLGAGFLHRTQL
SDNKKEVYFRLTPAGKKLHS
LHKYYHQKAEQRFLSFFDRY
TEEEILFAERLFRDLVTKWY
PSSEEIEGGLPSIFK
>_0013.000294_ NP_880253.1 gi|33592609|ref|NP_880253.1| conserved hypothetical protein [Bordetella pertussis]
MCSSPGHTFSKPVREAITLV
AGLGVAGDAHQGATVRHRSR
VRADPGQPNLRQVHLIHGEL
HDALQQAGFNVAEGTLGENI
TTRGIDLLDLPRDSLLYLGG
QAIVRITGLRNPCAQLDRYQ
RGLMAAVLERDAAGGLVRKA
GIMAVVEAGGDVRAGDPIEV
VLPPPPHHRLDCVYGPRNRD
RRAVPR
>_0011.004167_ YP_104873.1 gi|53716018|ref|YP_104873.1| patatin-like phospholipase [Burkholderia mallei ATCC 23344]
MPHALEHARTPFHDLPYETI
ALVLQGGGALGAYQAGVFEG
LHEAGIPLNWIAGISIGALN
TALIAGNPPERRVERLREFW
NTICQPAFFPALPAMFEAAL
FNSHEYVRTFFTASQAASAV
MQGQRGFFVPRFPPPLPGST
HPPEKVSYYDTSALRATLVK
LCDFDRINSGETRVSVGAVN
VGTGNFIYFDNTKTTLRPEH
FMASGALPPAFPPVEIDGEF
YWDGGIVSNTPLMEVLHASP
RRDTLAFQVDLWSARGPLPE
SMNEVTERTKDVQYSSRTRF
VTDTLQREQRFRNVLRRVLD
QVPESIRESDPWCQQAETLS
CSKRYNVQHLIYQQKAYEQH
YKDYQFGASTMRDHWSAGLA
DIRKTLAVKNGLALPDNDAG
FVTHDIHRMR
>_0009.001175_ NP_243513.1 gi|15615210|ref|NP_243513.1| transcriptional regulator (GntR family) [Bacillus halodurans]
MKMNFNKRDPVYLQVIRHFK
ERIATGALLPGEEIPSRREL
ANNLKINPNTAQRAYKEMEE
QGLIKTEGNLPSKITNDPDI
LASVRSELIRDAVDNFIAAI
KPIHVPIDEVITLLKEKYEK
DEI
>_0009.000196_ NP_242030.1 gi|15613727|ref|NP_242030.1| transcriptional regulator (GntR family) [Bacillus halodurans]
MKLPIKIEQNSRSPIYHQIE
EQIKALIVSGHLNEGDPLPS
IRALAKETACSVITTRRAYQ
NLEQEGYIRTTQGKGTFVAK
IGDEIKEQTKFSTVYHTLSM
AIETGRRHDYSFEQLLDMVH
TIIQQQKEKEGRGEE
>_0008.005635_ NP_982152.1 gi|44004484|ref|NP_982152.1| transcriptional repressor PagR, putative [Bacillus cereus ATCC 10987]
MTTIQASNEMYKIPEADVEL
LKIMAHPVRLQIVKELEHRK
ICNVTQLTELLDVPQSTVSQ
HLSKMRGKILRSERRGLEMY
YHIANSKACQIVSVLGL
>_0008.004209_ NP_980242.1 gi|42782995|ref|NP_980242.1| hypothetical protein BCE3947 [Bacillus cereus ATCC 10987]
MKVIRISELQMKDIINVSDG
KRLGNIGDIEIDMNTGKIES
IIISKQARMLGIFGKDIEIV
IPWKEIVKIGEDVILVRVNP
VNSVTESIQTPTIS
>_0008.003192_ NP_978747.1 gi|42781500|ref|NP_978747.1| transcriptional regulator, putative, Mar family [Bacillus cereus ATCC 10987]
MTQNELLNEYMNLLLNMSGT
FKLLSEKSSEFTHLEQHVVE
YIAQQKVPVNLKMIASYLNI
PKQQLSVTVRNLEQNGYIVR
KQDTVDKRAILISLTEKAKK
VHYERWKQIYNNFTHNLEKL
SEEDQRDLTYGLYKTNTMLS
KMLNNN
>_0008.000197_ NP_977538.1 gi|42780291|ref|NP_977538.1| transcriptional regulator, AraC family [Bacillus cereus ATCC 10987]
MESYETQIQRSIDYIEEDVM
EKQTLRNLARIAGFSESHFH
RVFQALVGDTVMEYVRKRRL
ARAAYQLSHTDEKIIDIAFE
HGFQSHETFTRAFKKLFQMT
PSEYRKQEIETPMYSSVNVK
QRKLNPYLGGIQMEYRIVNK
PEFLVAGYELKTTSKEGKNH
QDIPAFWQEYLQKDLGTTIP
NRKDTSQWVELGLCTDFNLE
TGDFTYIIGMEVTDFENVPD
GIAKRTFPSATYAVFTTPKV
PHEEMVSSIHQTWNAVFSEW
FPHSGYEHCGVTEFELYDER
CHEDKSEFAQVELWIPVKKK
>_0002.000101_ NP_148218.1 gi|14601677|ref|NP_148218.1| hypothetical protein [Aeropyrum pernix]
MGIRLTGSAVKLMSLIDGSG
LFIVEGTPILYHKPSSTILF
SDLHLGYEQAMAEAGVFLPR
VQLRRAILTLDRVVMGLKPK
KAVIVGDIKHAFDRLLKQEA
LETAKLLEWLSSRGVDKVIV
IRGNHDNYIPGVVTKSGGEF
VEDYLDVDKGIVAVHGHKKA
EFDADIIIIGHEHPAIKINV
AGSRVKYPAFLIVPREDGGT
IVVLPALGVYQTGNPVTLDR
SLYLSPYIREEGVVEEAVPI
IIDESVGSLKLPPLRELDKI
LG
>_0001.001219_ NP_070030.1 gi|11498801|ref|NP_070030.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Archaeoglobus fulgidus DSM 4304]
MSELSKLTFVHDRRKCIGCY
ACVIACKVEHSSENFDDPGR
IRVFHDGPRITGEKVQQHFK
VVVCRHCLSAPCVDECPTGA
LRKSEDGMTVLDLDLCIGCK
ICMEVCPFGAPQLGDDGKVR
IYDLCMPRIEEGKKPACVSA
CVAQCLQVKSVEDLKKKSKT
RKPEG
>_0120.000989_ YP_001301704.1 gi|150006961|ref|YP_001301704.1| putative transcriptional regulator UpxY-like protein [Parabacteroides distasonis ATCC 8503]
MPTCILRNDRPKGGLTQAGK
RHDLKAVRWYVLTLPTAAGG
RRDRISPSKGLDVELSRRER
RGEALFEYFAPSYVEVRKVG
GKLVNTRRPLLFNYVFIRSS
VEEIFRMKQALPLYNFLPRV
SSGSTTYFPHLLDQEMANLR
WVAEAYSNELPVYVPESARL
LKGDRVRITSGYFTGMEAEV
VIQPGGGHKEVMARILDCMW
VPLFEVKAGEYELIELNAKS
KHVYTHLDNDRLSEGLHEAL
GRYHVSGSVCEEDRRLAGEV
LRGYASLRAETDVMRCKLCA
LLLPTYKLSGDEEAFVRLHD
TMRGLLPVVKAPQSRALLLV
TLYGCTDNALYRRMAHELVD
PWQVDPSPKKSKLSLIRRLG
DYDRWLGHESVDS
>_0113.001633_ YP_001087008.1 gi|126698111|ref|YP_001087008.1| hypothetical protein CD0532 [Clostridium difficile 630]
MNYEIVEINEKIVIGISKET
TNKDGQAVNDIGELWKKFMG
KGIYNAIKGKKNDKTIGLYT
DYQGDFTSPYSFVACCEVNS
NSDKEKNLEELNTNNTVGES
IISKVIPAGKYAKFVIVGGQ
KEVGDFWFEFWQMDFDRTYI
SDFEEYQCNTFDTKKQEIHI
YIGIK
>_0113.001220_ YP_001086700.1 gi|126697803|ref|YP_001086700.1| flagellar hook-associated protein [Clostridium difficile 630]
MRVSTGMMSSSYLNSLQDNL
QRLDKVNRQINTTKEINKLS
DNPYKAIKILNSKSEIKTME
TYIENCKDTADWLETTDTSL
DQLGNLLADIKKGLVSSGNG
SYSDDEIKTISNSTNEKMKE
IANALNATHEGKYIFSGSNT
GTPPVECVENADGSVSLKFN
TSLNLNKLNDSLSVDVAQGI
SVDYNVKLSSLGFDPTKTDP
FEKLNNISKKLANPSDANIK
ELTTTCLGDMENLIDNTVNV
RSIYGTKANTVDAMKEKNDE
GLIQLKDVLSQNDEIDYGEK
LVQLKAAELTYQASLQTGGK
LFNVSILDYI
>_0111.000772_ YP_211614.1 gi|60681470|ref|YP_211614.1| putative MarR-family regulatory protein [Bacteroides fragilis NCTC 9343]
MICSLFVDKVNKETYLCAMK
QEYISRIRSFNRYYTKILGI
LNKYYLGSELGLPEVRIIQD
VYLHPDRSSKDISNELNMDK
GLLSRLLKQLEQKEYIFRKS
TEKDNRMGLVNLTEKGCEVY
YRLNTAANQSIERIFSHLED
RQLQRLVHCMDSIYKIINSV
ETGLTVDNNEPIVIRPIEES
DNASIASVLRASVEEHGAPK
VGTFYDDPHTDRMFQTFNIK
GAEYWIVESNGVILGGGGFY
PTKGLPHGYAELSKFHFRPE
LRGRGIGKRLLQFIEQRAVS
AGYVYMYIVSYHQFGNAVSM
YEKYGYEHIDNALDQSGLYQ
DAPFHMVKAL
>_0110.003092_ YP_001300092.1 gi|150005348|ref|YP_001300092.1| putative RNA polymerase ECF-type sigma factor [Bacteroides vulgatus ATCC 8482]
MTDFNREIADLYPWLFKIAR
RYCSSVCDIEDLVGDTIYKV
LSNKEKFKEGRALKPWCEVI
MLNTYITAYNRRSLIRFVGC
DNIKEIFSHNQASDDLMVHD
IQAAIRRCHNRTCCMDCVVY
YAHGYSYKEIGKMVGIPVNT
VRSRISYGRELLRNELDLTV
K
>_0109.000362_ RER070207000363 REr070207000363
MYSIGEIISTYRKKKGLLQQ
DLADELAKEGITISYKAISN
WERNLAEPSVTIFYKVCRIL
GITNMYEAYFGVNPADPFSS
LTDEGREKAMDYINLLHASG
MYEKQTAKIIPFRSIDIFEN
AVSAGTGNFLVDGPKETVHI
DESILPEDTTFGVRISGDSM
EPEFHDGQIAWVLQQESVAN
GEIGIFALNGEAYIKKLQND
KDGIFLISLNEKYTPIKVGE
NDRLDIFGKVLGKSDASAIT
GHCR
>_0106.002450_ SWOL_07JAN05_CONTIG99_REVISED_GENE2451 swol_07jan05_Contig99_revised_gene2451
MQAVVLENTNNLSQNEWLLM
RKQGIGGSDAAAICGLSRWR
SPMDVWLEKTGQLEPEKAGE
AAYWGQIMEPIIREEFTIRT
GMKVTTINSMLKHRRFTFML
ANLDGVVQDPNRGQGIFEAK
TAGLYASSEWGDSLPDEYAI
QVQHYLAVTGLPFACVAVLI
GGNRFKWLYLERDESIIDLI
IQLEAHFWRLVQTNTPPPID
GSRATTELLNRLYPHGKKQQ
IELPAEALDLIEAYELAKEQ
EEKAALLKDTAVNELKNMLG
ENECGVVQNRRITWQEIKTK
RFDSKLLRTEEPDVYARYLK
YSSYRRFQIK
>_0099.002816_ TFUS_04MAR05_CONTIG93_REVISED_GENE765 tfus_04mar05_Contig93_revised_gene765
MNAQRGIPSSHQNAFRLYGP
QFQNKPAELYRQMRTDYGPV
APVLLDGDIPAWLVIGYREV
THVLNHPETFARSSRRWNAW
DLVPENWPLYPMVTRTPNIL
YSEGEEHRRRATAISDALSG
ADQHEVRQYAVQAADRLIDG
FCAASRADLRADYASRLPAI
VLGRLYGLDQKHAEVLAEAM
TTMIDSGPDAVKAQQFLLQT
MGTLVAERRKQPGPDVVSRL
VHHPAKLRDEELIPDLVVIL
GGGHQPTTEWLGNTLRLMLT
DDRFAASLTGARSSVREALN
EVLWEDTPTQIYLGRYAAHD
VELGGQLIRRGDLVLLGLAG
ANSDPQINPGPECRMSQGNQ
AYLSFSHGEHRCPYPAPELA
EIIVTAGIEVLLDRLPDVEL
AVPVDELRWRPSPWMRGLVA
LPVVFTPVPPIGGQ
>_0093.002702_ NP_341635.1 gi|15897030|ref|NP_341635.1| Conserved hypothetical protein [Sulfolobus solfataricus]
MEMDMGSELGYDYRVLKLGG
SLITCKDVPRCVKLEVLRRV
SEEIRKFVNENPDKKIILLH
GGGSFGHYEASIFDDNRIVR
TSEAMQELNYIVAKHLLKSG
IKAISVPGKFYTFDAVLSAL
EKDLVPLIYGDVKFDGSIIS
ADDMSIDIAKRLNARLLFAI
DKAGIIGRGGGVISELRGID
EVSILMQTNYYDITGGILSK
IKKIFENNLNALIFDGSKTG
NIYLALRGYNIGTLVRGNPN
A
>_0093.000493_ NP_343455.1 gi|15898850|ref|NP_343455.1| Acetyl-CoA C-acetyltransferase (acetoacetyl-CoA thiolase) (acaB-2) [Sulfolobus solfataricus]
MGTFLNRIAIIGLGWYGFKP
TTHEVSFREMVFEAASRAYK
DAGGINPRSDVDSFISCQED
FWEGISIADEFAPDQMGGAM
RPTMTVAGDSLQGLAHAAMH
INSGVANVVSIEAHSKVSDI
LTFSDLEKFAMDPIYIRSIN
PPNFHFIAGLDAVKFMHRKG
ITREDLALVVEKNKKAGLSS
PRASFASNISAVDVMKKNYV
VYPLSELDIAPFVDGAIVIV
VADEEVAKKLKKDDYLVVKG
IGFATDSSNLETAELGKANY
MKIASDMAYKMAGVETPRRY
FDAVFVDDRYSYKELQHLEG
LRVSEEPSKDLREGNFSPQG
EVPVNPLGGHMAKGVPLEAS
GFSLLLDAIEYIKQGKGERA
VVASWRGIPTLTGSVVVVEK
P
>_0090.000131_ YP_166411.1 gi|56696057|ref|YP_166411.1| transcriptional regulator, AraC family [Silicibacter pomeroyi DSS-3]
MSCSALSQGLVFGKSEFPDR
GSDTRMDRLTALMERFQLRV
EAAAPEDANLLALAGADGTP
GELLFYPAGTGRAGDPLFAA
RVSWSGESNPFLAALPEVVR
FDLSADPEARAVVELIRVEV
AARRCGAQSVVNRLGEVLMV
RLLRDQIAQGATRPGLLAGL
ADPRLSRAIVAIHDHPGRVW
SNGDLAAEAGLSLSRFAELF
AAQVGETPMGYLRRWRLILA
AQDLGRGDRVDRVARRYAYG
SPEAFARAFRRAHGVAPMSL
RAG
>_0084.002826_ SFRI_16AUG04_CONTIG86_REVISED_GENE2829 sfri_16aug04_Contig86_revised_gene2829
MTTVRVAGVGMIPFCKPGKH
EPYRAMAAKAIKLALTDAGL
DAKSIGQAYGAYIYGDSTCA
QHAFYDVIQSGIPIINVNNN
CSSGSTALFLARQAVLSGQV
DCALAFGFEEMQPGALGSHW
TDRESPFERIEPVLKQFNAP
QGPIALRAFGAAGRHYMDKY
HVGADIFAKVAEKSRRHALQ
NPYSMFSTPLTYQQVLDDKL
IYDNYLTRLMACPPTCGAAA
TIVCSEQFARQNGITSKVKI
IAQAMATDTEQSWQDPIFAV
GKGMSQQAAQRVYDDAGIDP
NDIDVIELHDCFTPNEVITY
EALGLCPEGGAAELIANGDN
TYGGKFVIGASGGLMSKGHP
IGATGLAQCTELTWHLRGQA
GNRQVDNATLALQHNVGLGG
AVVVTLYGV
>_0082.000450_ NP_765873.1 gi|27469236|ref|NP_765873.1| poly (glycerol-phosphate) alpha-glucosyltransferase [Staphylococcus epidermidis ATCC 12228]
MIYTVTTTLPLSHGGRTQAL
LRRIKLLDEEFKIPSKILTT
NYHGNYPSIYKKYRQENKVT
ENIQFENMYEWLSNFKLFKV
PKTLITRNPKYIKTPRKIKG
LIDKQGKKSGLIHYYNNECH
VRSRKYYGQSNVLEYEDFIS
PTSGLKYERHQYNLYGQLHR
KEYYYDDSSLKHSDELFDTE
GSMYCKRYFKTKPNSKINGV
EIYRNKKLYKTFKNDKLLAQ
FYFQNRFKNQDIVFNDARFL
DKPLLKQTHQTKNILVLHSS
HLSGDQIKKSYRFALNQSKN
VYKYIVLTHQQKHDIQQHFH
ISDDQFQLVPHFIELDTEVE
QDSSNNQNRFIYIGRFSTEK
QIDHIIRAYHKFLQSGYQTE
LHLFGRDEDNQIPLMNTLIS
ELKLSDKVKIFKYTNQPLQE
FKNSKASLLTSQYEGFGLTL
MESIEMGCPVLSYNVRYGPS
EIIQNGINGYLIEKNDIDSL
SKHMINIIEHPLQKVKNKDT
LKYNAAVNNYKQLMQSLDLL
K
>_0081.002139_ SDEN_20JUL04_CONTIG118_REVISED_GENE2140 sden_20jul04_Contig118_revised_gene2140
MELDACLIIKFGGSIITDRE
SPYTLKRDMCNALIQKVIAL
KQQSATPILLVLGGGAYGHP
PVHEYGLASARGNGTVSNLQ
FSRLTTGLYKLMVDFMQISY
ENSLEMHPFQSSSLFMCQDG
KVKSVFSEAIEKSLQFNDIP
LLTGGSAYDTTLGQLVFGSD
RIPELLTKMFKVSKCIFVSD
VDGVYEHTGGKMFDEITPEL
YPSLSDAIFATGRLDVTGSM
KGKVDAAMRLAEMEVSSVIC
SAATFLATGVSDICSGNISG
THFNSSEKVGLNPKMEELC
>_0078.006894_ NP_821782.1 gi|29827148|ref|NP_821782.1| putative taurine catabolism dioxygenase [Streptomyces avermitilis MA-4680]
MRINERPGTAIGATVEGFDH
ATASDADIAALKSTVYTKKI
AVLKGQDLSPQEFLELGKRL
GRPETYYEPMYHHPEVTEIF
VSSNVPENGKQIGVPKTGKF
WHADYQFMPDPFGITLIYPQ
VIPRQNRGTYFIDMGRAYDR
LPEDLKKEIGGTYCRHSVRK
YFKIRPHDVYRPISEIIEEV
ERKTPAVVQPTTFTHPMTGE
TVLYISEGFTIGVEDQDGEP
LDDELLKRLFQATGQLDETF
EHDNIHLQSFEQGDLLVWDN
RSLIHRARHTTTPEPTVSYR
VTVHDERKLHDGIKVA
>_0078.004648_ NP_823630.1 gi|29828996|ref|NP_823630.1| putative TetR-family transcriptional regulator [Streptomyces avermitilis MA-4680]
MVTSRWTAAPAQTASLRRRG
AVLERAILDAALEQLSTVGW
NGLTMEGVAAGAQTGKAAVY
RRWPSKEDLVVDALQAGLPR
FDEVPDLGCVREDLLQLCRQ
AREAMFSRPGLALRSVIHEC
DSSQADRFGGVILEGVVEPT
VKLLRAIINRGIERGEVRSD
AANGYVFDAIPAMMMYRTKM
CASEWSERDIEELVDQLMVP
LLRPQGA
>_0066.000166_ NP_904456.1 gi|34539977|ref|NP_904456.1| capsular polysacharride biosynthesis gene, putative [Porphyromonas gingivalis W83]
MLNNASYRLKYWLRKAVKWM
PAYRKTYREAHVVSSREQQE
HLFWELLKYVIVHVPYYRDY
QKFLGGNVQIEDLPIVKKED
VAKDALSFVSDEFNPEKLLR
VSTGGTTGTSTNIYTSWLDG
VRQTAYIDAAIDLGRVSNPI
ICTLREHDLKATEKYRFWGN
RLMLSPSNMNKDSLEYYVDL
MRRYRVNILHCYPSSLMVLC
KLLQNTQVNLDIEAILVSSE
IVSSELKHIVREVFPRATFI
NVYAQTENVARGISLNAAPF
EFLSCKYLVEFLDTGERRDG
NIIAEIVGTNLEKKSMPLIR
FATGDYAVLNQRGEVIDILG
RTSEYLIDKFGNPIPCIVTN
RPHTLDNVLLAQYYQEKIGE
FEYRVMVNENFNSNDIRAIE
EDIKLNFGDGLFARVVVVTQ
MEKTSRGKHRKLVQRLDLSL
YL
>_0061.003181_ NPUN_22DEC03_CONTIG1_REVISED_GENENPF6481 npun_22dec03_Contig1_revised_geneNpF6481
VKFRDCAAAVMGSPKSECQL
SRCHTHHLLPALHGEGVPSL
LSGFATCPGLFYATPAADGI
LSRIRIPGGIISSQQCRAIA
DIADQHGGGYVDVTNRANLQ
VREIRTGINSEVLQHLQDMG
LGSRNSVVDHIRNIMTSPTA
GIDAQELIDTRPFVQDWDNY
IAAHPALSGLSAKFSVCFDG
GGIIRVCDRLNDILFAAVLV
DGNVYFRLYLSVGTKGQPPS
DTGILLTPEQCLPVLAALTE
VYLAHSNTTNNRRLRLLELL
NTLGCENYLQEVQQRLPFSL
LCSNLTPQPPSLVGKGEKFS
PLLQGEGLGERLDAKYQHIG
IHPQRQQGLFYIGVVLPLGR
LESNQMKGLADLAAKYGSGT
LRLTPWQNLLLTDIPQQWVG
DVQSKIAFLGLDISATNIKS
ALIACSGNKGCASSATDTKS
HALALVEYLETRVTLDCPVN
IHFSGCEKSCAQHSKSDITL
LGVSIEDGNGTVEGYHVYVG
DSEHKFGRKIIYQYVTFAEL
PALIKRMLDVYKIQRLNSDE
SFGEFANRYTEKL
>_0056.000220_ SARO_25NOV03_CONTIG23_REVISED_GENE234 saro_25nov03_Contig23_revised_gene234
MVPFSFAGQEFRLGAARALF
WAEESALLVADLHLEKASFF
ARHGQMLPPYDSRATLERLA
GALRETGARRVFCLGDSFHD
AAATERMEPHAAGMLDALTR
ATDWVWITGNHDEDARAPGG
TLVDELSVRGVSLRHIARKG
AAGTEISGHFHPKLRVTVRG
RSIARPCAVASENRLILPAF
GALTGGMHAGDPAILAALQP
ARAIDAIVPAGERLARFALW
REAA
>_0052.005627_ NP_106770.1 gi|13475206|ref|NP_106770.1| integrase/recombinase [Mesorhizobium loti]
MIAHLRAFLRYCGDHGEAAG
GLHVIDMPRVYRGELPPRAM
DWTMVRRLLASIRRRAARDW
RDYAILHLMAYYGLRPSEVA
TLRLDSIDWKARTLRVEQRK
TRSVLVLPLAGRTLRLLHRY
LQVGRPDSVLPQLFLRIRSP
IKPLKHYGVITVFTYRAQKS
GLSLGGVSSYSLRHAFAMRL
LRRGVDVKAIGDLLGHRSLE
ATCVYLRADVDMLRKVALPV
PGIMVVEGGDHA
>_0046.001459_ NP_470489.1 gi|16800221|ref|NP_470489.1| hypothetical protein lin1152 [Listeria innocua Clip11262]
MEKEKVVNIQPLMNSQVENQ
FTQQIQEDFNKKNPDHSALL
HSLETVEVLDVLSDYYTAHE
KQKQPKKEAATSSKTSGEHK
EIKQAIRYIKKNIHRSITLE
EVANYVYLSPFYLSKLFKNE
LNINFINYVNEQKMLYAKEQ
LEKSDWAVHTIAKNLGFSRA
SYFCKVFKKEFDMTPKEYRD
SLK
>_0043.002519_ JANN_22DEC04_CONTIG27_REVISED_GENE2520 jann_22dec04_Contig27_revised_gene2520
MAQIFELSREKPVRRVEAWQ
DIVSRTFVTLACDLPDKTDV
TGSIASIGNGPISASLVDSV
AQTVDRTRRLIRQDDAEVAL
ISFQIEGECLLQQRDRQVRL
RPGDFTIYDSTSPYDLQFEE
DFCQLVLHMPRDLLRRRLGP
VRQICAQRFGSDTGANSFAG
AYLKQIALQLTSLETATAEH
HIKTALDLVGYAVEQNVQPC
GHDVRRQSAAIREQVAQVIS
KHFRDDQLSTPSLARAVGIS
SRRLQEVCAEVGTTPMNAIW
DIRLEKASDMLRSPAFAHLS
ITDICFACGFGDSSQFSRRY
KTMYGVTPREDRKSGYRNGF
SGSVQTLSKSAGRFQRR
>_0043.001500_ JANN_22DEC04_CONTIG23_REVISED_GENE1501 jann_22dec04_Contig23_revised_gene1501
MPLKYSDSVVLVGGGPLSPD
IFDVVKYRAGFFVAADSGAD
ALLAREVIPDAVIGDMDSLS
ERARAAIPKDRLVAVSEQDS
TDFDKAVRGIDTPLIYAVGF
TGGRLDHELAALHVLVRYGH
RAIVLVGEEDVTVHLPARIT
LDLPRGMRVSLFPLDAVTVG
MEGLRWSFKALALHPIHKIG
TSNEVGEGPVVLTSDAPGAL
LIVPRSALDAVVAGLSRADL
HSPQPELSAKT
>_0038.000217_ NP_280276.1 gi|15790452|ref|NP_280276.1| 2',3'-cyclic-nucleotide 2'-phosphodiesterase; YfkN [Halobacterium sp. NRC-1]
MDLYSAVDPDVATFGNHDFD
YGPSRTAAVVADSPQTWVSA
NVYHDGDRVAGVEPWTLVER
DGTTLGFFGVLDADTPALNP
MASDLTVTDPIQAATDAEAA
LRDAGAEYVIALSHLGRGDD
ELAAATTVDAVLGGHIASER
VERLDGTLLTRPGAGGDVVF
EIDIAADTVTRHQVDNAPRH
DGVTAALRDRLADAGLDAVV
GHVTPPMERTERTLFEGESR
IGNFVADAYRWAADADVGLQ
NAGGVRDGPALAGDVTVADL
VSVVPFAEPVSVAELTGREL
LDVFRAGNGSGGLGFAEPDW
WHAHVSGATLEWRDGDGLVS
ASVGGDPVDPDATYTLATTD
YLFYSDDEFPALDAGHRIDQ
LDTQHEVLASYARQEGINPE
TEGRIRFHADD
>_0033.003556_ YP_051469.1 gi|50122302|ref|YP_051469.1| pyoverdine biosynthesis protein [Erwinia carotovora subsp. atroseptica SCRI1043]
MWHKCALFSPYDLLKTSILS
SYKGIYTMENRVNCSIELLS
PFGALLTPVEAGQGIATLPI
DTLRELAREYHLLVLRGFSS
GFSDPETLTEYAGHWGEIMM
WPFGAVLDVKEHADTKDHIF
DNSYVPLHWDGMYKPTIPEF
QLFHCVSAPGQDQGGRTTFV
DTTRLLAGADAPLVEEWRRV
SITYRIKAVVHYGGEVTSPL
VIPHPNGVGEIMRYNEPPTK
GERFLNQHALEYHHIAPEAQ
NTFSQTLRQHLYDPRYYYAH
QWLQGDVVIADNFSLLHGRE
AFTAHSARHLQRVHIQGTPI
CVNTCIDNAA
>_0033.002337_ YP_049353.1 gi|50120186|ref|YP_049353.1| hydrogenase-4 component A [Erwinia carotovora subsp. atroseptica SCRI1043]
MNRFVIADPELCIGCNTCMA
GCTSVHKAQGLQGLPRLTVV
KTEDKTAPLMCRQCEDAPCA
RVCPVNAITHENAAIVLNES
LCIGCKLCGLVCPFGAITPS
GSTPVNTPALLQNMIPEALL
RDVPGSAPGTNPFIAWNAGI
RAIAVKCDLCDFQDTGPECI
RVCPTKSISLVDSQSISTNS
QSRRLKTLLSSFHEQGFMSV
QQEGDE
>_0033.001329_ YP_051461.1 gi|50122294|ref|YP_051461.1| hypothetical protein ECA3372 [Erwinia carotovora subsp. atroseptica SCRI1043]
MFPSFLRRTAAKNGSYANEI
SSSIIINRPAERLFDLWRKP
ETLPILMGHFASIEILNHTD
SNWRINTPIGSLIEWQARII
DEKPGEYIHWRSLEGARVPN
EGRLSFQPAASEAGTAVTLT
IRYNPPGGLIGKKIGQMFDM
FSRDMLTKTLYRFKKLAEDE
RV
>_0030.000057_ DHAF_12NOV03_CONTIG1004_REVISED_GENE68 dhaf_12nov03_Contig1004_revised_gene68
MGSLLTAQEVAEMLNLSVDT
VWRYTRQKKIPVMELGKKQY
RYEKEAVLAALTAGKIPAED
LPVKEESFGYAKQGEYTYED
YVRIPEEPGYRFEVLEGMLI
KEPSPTTHHQRVVFALSRQL
ADFFEGFDPEGELFIAPLDV
TLTSRNVVQPDILFISGSRR
SIMRPERIDGPCDLVVEVMS
PSNRRKDRLRKLEIYRRAGV
PHYWLVDPEENILEAFVLRD
ERYVLIVVSGPGDRFAHPDF
PGLDLDLAKVFYRPEYE
>_0029.000122_ DGEO_15APR04_CONTIG101_REVISED_GENE94 dgeo_15apr04_Contig101_revised_gene94
MSNSQILGERARILADQLLA
VPTTVYQQRSLQAALHLFLD
TGTKTALHRAPLVSKSAVSR
LLNNYDWDTAACWALLQRSQ
WEALLLAARRKRRACLRLSV
DLTSIEKTGKQLPFVRVYNE
VHGIHLVVLFAEYRGLKFPV
GYRVYRGKGTATPVSLALEL
LGEVPDAIRKRFRIRVLADS
GFEAAVFLDGVRTLGFEFVV
GVRATRRTTHPGQVTVADCE
HGAWLELQNWPHDTLTLARV
ERGERTFFSVASELMTGDEV
AAEGGKRWNIESFFKEGKHQ
FSLQQFALRTARGLDRWVLL
VFLAFTLTMLHRSPDLSLEE
AAGLALTLALPFLRLNVIFA
RLATDEEFLRQHGYSLKIAR
CNS
>_0028.003247_ DDES_06JUN05_CONTIG143_REVISED_GENEDDE3255 ddes_06jun05_Contig143_revised_geneDde3255
MAKKKILFITGTRADFGKLC
SLIDKVSEHTEFEYCIFVTG
MHTLSRYGYTVDEVMKKYSS
FRLEGGFRNVHVFMNQVHGE
SMDMVLGNTIFGLSRYVSEY
QPDMIVVHGDRVEALAGSIV
GSLRNILVAHVEGGELSGTI
DELIRHAVSKMAHLHFVANG
DSRRRLMQMGEAEETIYPIG
SPDVDLMFSPNLPSKESVLA
YYNIPFTEYAITLLHPVTTD
LEQTKKMAGAVVDAMLDSDD
NYIVIYPNNDHGSDIILDEY
DRLSGEGRIAVYPSLRVESF
LVLLRAAKYLLGNSSAGIRE
TPCYGVPSINIGSRQDGRFC
CSSIINVPGSYDAIVKALAD
VRKMVPHPPRFEFGRGNSAE
QFIKILMDEKTWLTKPQKQF
VDHHFALCR
>_0028.001498_ DDES_06JUN05_CONTIG143_REVISED_GENEDDE1501 ddes_06jun05_Contig143_revised_geneDde1501
MSMVINHNLMAQNASRNLST
AYGNLSTSVRRLSSGLRVGT
AADDAAGMAIRELMRANIAS
MHQGVRNANDAISLLQTADG
ALSVIDEKLIRMKELAEQAA
TGTYTSDQRLLIDSEYQAMA
SEITRIANSTDFNGIQLLNG
NLSSSTHDGSGVVSRGKMKI
HFGTANDSAEDYYYIQIGTA
TASALGVGNQADATFGGFAI
STQSAAQQALVAIDKAIVSK
DNIRAALGVLQNRLENTITN
LQIQAENLQAAESRISDVDV
SNEMTEFVRQQILTQSAVAM
LSQANSLPRMAMQLLGG
>_0028.001265_ DDES_06JUN05_CONTIG143_REVISED_GENEDDE1266 ddes_06jun05_Contig143_revised_geneDde1266
MSNIRFIANQKARQQTDKVD
VSFLSCAEAEVVRGFFKTFE
GYEPTPLVGLKGLAAELGVS
SFYLKDESKRFGLNAFKVLG
GGYAIAKHICRRLGVPIAEM
SMERLCSAEVREALGEVTFV
SATDGNHGRGVAWAANRMGQ
KSVIYMPKGSAVTRLENIRA
EGAQASITDLNYDDAVRLAW
KDSQEKGWVMVQDTAWEGYE
EIPGWIMQGYTTLALEALEE
FERQEGEAPTHVFLQAGVGS
FAGGVQGLLAQRYGERRPVT
AVVEPELADCIFRSAAAADG
NPHFVTGDMPTVMAGLACGE
PNTVGWSILRDYSDGYISCP
DWVAANGMRILASPRPGDAR
VISGESGAVTTGIVECLMRM
PDMAPVREALELDGDSRVLV
ISTEGDTDPVMYRKIVWQGA
YPEIEG
>_0025.000037_ NP_282281.1 gi|15792458|ref|NP_282281.1| putative lipopolysaccharide heptosyltransferase [Campylobacter jejuni]
MKIAIVRLSALGDIIQSAVV
LQFIKNFKKDIEIHWFVDEK
FEGILKNHPLINKLYALPLK
DKKILKSLKILLKARKNNYN
AVIDLQGLIKSAIVSRILSR
NNFGFDKNSLKESFAHNFYN
QKLELDYNENVFVRYLSLTS
FMLNTDFNVKNLAFKQDIFS
VDENLKQLLNNKLKLDKNEK
NILIHVGSSVENKIYPKTKL
AILCKLLINEFQQTKIWLAW
GNVKEYEFAKEVLNLSGIDE
THIELAPKFNLEELMAFTKM
MNLIIGNDSGPTHLAFALNK
ASITIFGATPSYRNAFQTHI
NKIIDAGKKIQNAKHIDKSD
FCITRIEEEDIFKLAKGLLN
EK
>_0023.002952_ NP_599335.1 gi|19551333|ref|NP_599335.1| Mar family transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
MTQDEHPRQADSHFNMLLPD
GNENAHQLSVALNQVAHLLA
YDADSSIHRPDGLSLASYRI
LFSLWTDGPMSPLQVTDKTG
MKKSAISNLLKPLLAESLIV
QVTAENDRRSKVLSLSEKGT
TYIQKTATRQNALESEWFGT
LTDIEQDLLESLLRKLLDSN
RASKVRKNRSN
>_0023.000616_ NP_599274.1 gi|19551272|ref|NP_599274.1| 5'-nucleotidase/2',3'-cyclic phosphodiesterase or related esterase [Corynebacterium glutamicum ATCC 13032]
MLKCAVDEAAGGRAQAFVSS
GDNIGGSPFQSSILGDEPTL
EALNQMGLDYSAVGNHEFDK
GYADLSSRVADLADFDYLGA
NVEGENPDLAPYGISHLDGV
KVAFVGTVSQETPMLVNSEG
IEGITFTDPLEATNRVADEL
VGSGAADVVVALYHEGITGT
EAWSENIDVVFAGHTH
>_0020.003006_ CAUR_25MAY01_CONTIG969_REVISED_GENE4515 caur_25may01_Contig969_revised_gene4515
MWPTPLAFSLAIEQLAGVTA
PLRAQAVRVMLAELERATSH
INTLAALATALGLTDAARLS
RLTTRLGLIALKLSGNDEAA
LIRPGGLLADPSESALAETA
QAINDLLPRMIAVAEQSIPR
RSLLARTVDIGVLQPTAARQ
FGLAGPLARASGVATDVRIQ
EPYAAYNILAPALVTEEGGD
VHSRAVVLLLEAIESLRLVV
RWLQNLPIGNVYEEVPLVAG
EATVTVEAPRGSLRYTVRSD
GQRLTGVEIGIAPQLDRLLA
RSLLQQAAVDDVMLIAISTD
PCTACWQSATYLIGRS
>_0020.002217_ CAUR_25MAY01_CONTIG813_REVISED_GENE3319 caur_25may01_Contig813_revised_gene3319
MRILYILPRYDSAAMGNRIH
TEVIHAWRESGITAEVLSLA
ANQAQPTRTVEDDIVVHRLP
SRGTFVTQVVNRVVNPLFSY
PYLASAIVGLRRFLATTPPF
DLCHIETAFPLGVAALFAGR
YAPPLAVTLPGADVMAEPEY
DYGYARFRAVRALLPLVFRR
ALVIRADSPQIRELAIVRGA
PASKVTAIPYNITEDSFPPA
DMPLSEMRARSRAIIATRHG
LDPERPIIVSLNRLHPFKGI
AYLVEAVPTIRAAGLAPQVV
IVGPNRSTPRFGDYGEFLRR
RAQALGVAADVIFTGAIPHH
DARTYLAGADVAVVPSVAES
FSRVVIEACAVGTPPVVTRT
TGASAYVAAAQAGIVVEPRS
GPAIGEAIVSLLKDRAVWQA
YSARAAAHGTAVFFTADRYR
TGRSLSGTPLRSKAFPETVA
TGR
>_0018.008151_ BFUN_06OCT04_CONTIG482_REVISED_GENE8152 bfun_06oct04_Contig482_revised_gene8152
MTQSDPLHPANGAAAVPPVE
SFRSRDFLLSHVQDTLRFYA
PNVLDPSGGFFHFFRDDGTV
YNRTTRHLVSSCRFVFNYAM
AYRQFGDPQHLEYARHGLRF
LREAHWDAQHEGYDWELEWH
DGRKRTLDATRHCYGLAFVL
LAYSHAAMAGIEEAKPMIGA
TFELMEHRFWDAAAGLYADE
ASPGWQVSSYRGQNANMHTT
EALLAAHEATGHLVYLDRAE
RVASNITLRQAKLSQGLVWE
HFHADWSVDWHYNEEDSSNI
FRPWGFQPGHQTEWAKLLLI
LERYRPLPWLLPRAIELFDA
AMTHAWDEDHGGLYYGFGPD
GTVCDHDKYFWVQAETFATA
ALLGKRTGNERFWDWYDEIW
RYSWAHFVDHKYGAWYRILT
CDNRKYSDEKSPAGKTDYHT
MGACYEVLAHALPNGAAAAS
ESAEQTK
>_0018.006734_ BFUN_06OCT04_CONTIG482_REVISED_GENE6735 bfun_06oct04_Contig482_revised_gene6735
MLIVNVSTMTTAPLNGADIP
SRREGIVNAASETFLRYGYA
RTTMADLAKAAGLSRPLLYL
EFQDKADVFRAVAEQVAREL
ERRIRAELDALPNLRTQLNL
ACEIWVVETFDLISAHPDAK
DFFDLGPELLGQSYDAFEVL
IADILSRAGAKQARALARLL
VSASKGFKESASDGKDLRKL
LQLQIDALVGYIERNAHAAA
APHAPCVRRTRRQ
>_0018.003281_ BFUN_06OCT04_CONTIG481_REVISED_GENE3282 bfun_06oct04_Contig481_revised_gene3282
MSLNVEAAHPFIAARIHGLD
LSKPLSDERIVEIEQASGQY
PVLIFPRQYIDDDQLLAFAA
GFGPLQVAVSYSTRPEDHRL
APMINDISNLSKENQTYRPG
DRRRMNNLTSRRWHSDASYL
PLPARYSFLLSYIVPAVGGQ
TQFADMRAAYDKLPDHLRKV
VEGLSCHYDIMASRAAAGFY
DASDEERKALAPCIHELVRT
HPISGRKSLYLSSHATHVVG
WPEPEGRDLLRELTEFATQP
QFVYSHEWSVRDLVMWDNRA
LMHRGRPHIPETDVREMHRA
TTLDDRTWTRGSNQPVAASV
A
>_0018.003277_ BFUN_06OCT04_CONTIG481_REVISED_GENE3278 bfun_06oct04_Contig481_revised_gene3278
MTLRVHARVSKLGSRRIAAR
MPRDASDWRTQAPITSAPAD
FDQRMRRTEQETDLAHIDAA
QVTRIAHIADALLGARRSNS
VLPMLAAQDASVSMPEAFAV
QSDMTRLLGQPIAGWKVGYV
RDVRLTHAPVYRDACVASGA
RVRLTSTLAPAVEGEVAFVL
SRDLPPRASPYTPDEVADAV
SSVCAAIEIGAPRLGNFMEA
PLEHKIADNMGNCALIYGSG
QRNWRDIALESLRVTLAIDG
GVVTETHGGNAAGNPFDALV
ALANAPHKREPLRAGHVVIT
GTCTGIYPARAGMQARVAFE
GLGEVSVTLE
>_0016.004141_ YP_440670.1 gi|83718709|ref|YP_440670.1| gp47 [Burkholderia thailandensis E264]
MSHVSPVFSHPRPGQVRLSG
RIVLRGTMSAVQPDGPDTRR
PALKLVKTQELSRDDWLAVR
RTGIGGSDAAAAAGLNPYMS
TLELWMDKTGRAEGLAGPDP
NDTTSPTYWGTLLEPIVAAS
YTKQTGNRVRRINAVLRHPT
IPFMLANIDREVVGCREVQL
LECKTAGEYGARLWRAGVPE
YVELQVQHQLAVTGKQAAHV
AVLLCGQALEVYRIERDDAL
IGRLVELEARFWRYVESDTP
PPADGSESADRALRHLYPGN
GGTVDFTDDRQLSSVFADLV
AVRAQIETHQAIEAQLKQAI
QQAMGEATRAVFETGAVSFK
RSRDSSTVDLARLLADHPEL
EQQYAGSKPGTRRFLISA
>_0011.004391_ YP_106522.1 gi|53716073|ref|YP_106522.1| 4'-phosphopantetheinyl transferase family protein [Burkholderia mallei ATCC 23344]
MTNRMTNASTTLPTTNASPV
PPLGERDAHVWYARTAACDT
PALRERYRALLSAEERERLG
RFAFDHLKLEYLVTRALCRT
VLSAYVDAVAPEQWRFRANA
HGRPEIDAGDARPPLRFNLS
NARSIVACVITRTADAGIDV
EERARSNDLDGIAASHFSAS
ERAAFFALPPDARRTRFFEL
WTLKEAYIKARGVGLSIDLG
EFSFALPAQPVRIAFDRHVD
DDASHWQFALLDVGAEHQMA
LGIRDPHAAARPFDITMREI
VPEPAASARCAAALD
>_0009.000822_ NP_242718.1 gi|15614415|ref|NP_242718.1| siderophore (surfactin) biosynthesis regulatory protein [Bacillus halodurans]
MCLSSNVNQHNDTTVVVGTI
SSLHSRKEELYSYLSSDERQ
RAERMKSSVYAERFKLIRGY
LRFLLSTVLALPPNQIHFTY
GKYGKPIVENNDYFFNVSHA
KDYFLIGLHETAVLGVDIEC
PRPFPPKVHPFFFHQDEINL
LASVDPDQKMRLWLSLWTRK
EALGKAVGEGLSSNIGKQSV
LSDTIHYNGREYVLLTQHDP
SYVKTICLEGKSVQ
>_0009.000473_ NP_242362.1 gi|15614059|ref|NP_242362.1| BH1496~unknown conserved protein [Bacillus halodurans]
MKGIVYIGHGSRVEEGNEQL
RAFVKKAIERKRDIPIQTIG
FIELAEPSIEEAIDECVAMG
ATDIAIVPVLLLAAGHAKVD
IPQEIERAEKKYPEVSFSYG
RPFGVETVIVDVLKQRLEAV
GLKHVNGLPAYDDREEATIL
LVGRGSSDPDANSDLVKISR
LLWEHVPVMEVEVCFLAATR
PSLDEGLEKVIRLAGKKVYL
LPYLLFSGVLMNSLQAKVNE
LNETLLNKEFLLCHYLGFDD
QLVNILVERVDEVLEHKISG
NPDLYHDRLSKQANGVEGL
>_0008.000665_ NP_978113.1 gi|42780866|ref|NP_978113.1| hypothetical protein BCE1794 [Bacillus cereus ATCC 10987]
MDEIIKELQKLGFSQYECKA
YIGLLKHSPVTGYEVSKQTG
VPRSMIYEVLGKLMDKGAVH
IVPSEPVKYVPVPATELMNR
MRKDFEKSFEFLDEKLNGLE
QERQIDVISHIRSNDRVLKE
ICNIINRAKEELWISVWEDQ
VHEIEPYIHQKEEEGVHIFS
ILFGAPETKIGATFHHNYMT
PHVVEKRMGGHLTVIARDGE
EVLIANFSNDSTSWAVTTYD
PALVLVATEYVRHDIMVEEI
TQEFGADKLDMLWRENIDLV
HVVTGKRTLEGMEDDTDE
>_0006.001526_ NP_890104.1 gi|33602544|ref|NP_890104.1| putative decarboxylase [Bordetella bronchiseptica RB50]
MHPASNSAVTRDSAAVMSRY
DLTTRLVGRLDDAAVIGGIG
STNHDLWASGQRPQNFYMLG
SMGLAVPIALGVALAQPSRK
VIALEGDGSLLMQLGTLGTV
AACRPANLTIIVFDNGVYNI
TGGQRTLTSHTIDVVAMARG
AGLRNSHWAADPAHFDALVE
QALRGDGPSFIATRTDRQLA
RMFSEFNPTKIRQGFSAGLG
VA
>_0004.004571_ 17743322 gi|17743322|gb|AAL45603.1| glycosyltransferase [Agrobacterium tumefaciens str. C58 (Dupont)] (gb|AE008689|:1987626-1988825, Atu4809
MKLAYFVIPHIGGTYSVFKH
LRKGLAAYDIDVRWLGVCKE
TYGLPLDLQGETAFGQLLRM
PVNLSERDCAARMAAAIENG
GFDGVIVNVLGDQLQTNIAR
YLPEGILRILVVHNISPGTY
AAARSVRDYAHVTIGVSERC
RADLVARNGFPKDRTYAIPN
AVDSDAFRSQAVRRVNRGPE
LKVLFVGRIEDASKGVMWLR
EILDGSPEAVRLTIVGDGPD
MGKLRRRLASHDDRVSYAGS
VQLSDIPVIMASHDVLIMPS
RFEGLGMTMIEAMAGGCVPV
VSHIRGVTDTIVEPGRNGFL
FPIGNYTAAANAIGRLHADR
DLLERMSIAGKEMVLNRFSI
ERMAARYNEVIAMTLNDRPG
LSTVLRMEDWSIPAGLRPGL
RTYLPLPLKNWLRVVRERL
>_0004.004461_ 17743201 gi|17743201|gb|AAL45493.1| N-ethylammeline chlorohydrolase [Agrobacterium tumefaciens str. C58 (Dupont)] (gb|AE008689|:1860497-1861990, Atu4699
MSDTLNSLQLGERPEGRTLL
TASWVVGHKDGSHRLLKNGE
VVFENGEILFVGHGFPGEVA
RRIDFGNALVSPGLIDLDAL
SDLDTTILGIDHHPGWAKGR
VWPRSYVEAGPYEMYSAEEL
AFQKRFAFGQLLLNGITTAA
PIASLFYRAWGETVAEFEAA
ADAAGELGLRVYLSPAFRSG
GMVLEEPGRMFPVFDEERGF
QGLKEAIAFIEKQSGRHGDL
VRGMLAPDRVETSTLGLIER
TDAAARELGCKFRLHMAQGV
MEVDTVRKLHGSTAPVWLAK
AGLLSERLIAPHATNATEED
LALYAENGVSIVHCPLVSSR
GGSTLSSFSSCRKRGINIAM
GTDTAPADMFMNLLVGLITC
RINDGAPDQIRCADLFDAAT
LGGARALGRSDLGHLSSGAR
ADIAVFDLDDAVMAPSVDPI
TTLVTGGSGKVTRAVFVDGR
LSMRERQVAHIDMRRAREQA
QAQFDRLIAKYPERSWANPP
VSEIFPPSYQVEVAQHG
>_0003.004089_ ARTH_26JUL04_CONTIG47_REVISED_GENE4095 arth_26jul04_Contig47_revised_gene4095
MKRIGFLSFGHWGNVEGSRT
RTARDALLQGIDLAVAAEEL
GIDGAFFRVHHFARQQASPF
PLLAAIAARTSRIEMGTGVI
DMRYENPLYMAEEASATDLI
SGGRLQLGVSRGSPEPARDG
AAVFGHVPADGESPADMARR
HTAVFRHAITGAGVAERDPR
YGGGPGKLPVQPNSPDLARR
IWWGAGSRATAVWTAEQGMN
LMSSTLLTEDTGVPFDELQA
EQISMFRAAWAGAGHQHTPR
VSVSRSVLPIVDEEDRRYFG
LSALREKRDQVGIIDGLVAR
FGKSYVGEPEAIAGELAADA
AVQAADTLLLTVPNQLGVDF
NAKLLGTVARHIAPAIGWQP
KWSPAAALPAAGASGAEASR
G
>_0003.003346_ ARTH_26JUL04_CONTIG46_REVISED_GENE3351 arth_26jul04_Contig46_revised_gene3351
VERPAKGRRRLAAAVRTAGR
PAVTALRVPVATVLPEDAED
ALLIGRLWDVDTSGPRVVAV
QGGDVFDLQHLAGTVSELLE
RADPAADVRAAMSTPRWKTA
DVVSASLRQDITRPHLLAPV
DLQVIKACGVTFVDSMIERV
IEERCGGDAGRATEMRDLVG
KSLGGSIGEVRPGSPEAAKA
KRVLMAEGLWSQYLEVGIGP
DPEVFTKAPVLSSVGLGAGV
GIPAFSSWNNPEPELVLIAT
SGGKVVGATLGNDVNLRDVE
GRSALLLGKAKDNNASSALG
PLIRLFDGGFTLETLRQEEI
LLRVEGADGYRLEGRNTVAR
ISRPFEELVAATFGSHHQYP
DGFALFTGTLFAPTQDRHEP
GQGFTHKMGDVVTIRSRHLG
ALVNTVGAAEELPPWHFGLR
QLFAYLAGEERSASAAGAAS
VS
>_0001.001102_ NP_068848.1 gi|11497628|ref|NP_068848.1| hypothetical protein [Archaeoglobus fulgidus DSM 4304]
MNAEQLMEERRQRIEDVVKG
KEPDRVPVTGATTVWHGSYA
GYTAKEVLFDYEKCKDAWLK
VAKDFDFDSFTVVGGLEGMI
YTVALLEQPDMSAAARFILG
PTHLVLQDVYTRWPGYELEE
NAHPQFIGKEIMKVEEYDQL
IENPLEFINKVAMPRINRKL
ANVGSAEYNAALAKYGAELA
RFGAFMADVSMELAKLGYPT
IPMSWAYAPLDLISDFLRDI
KNMVMDLYRYPDKVKEAVEA
VKPLIIKAAEVSAPPKEIRK
QVFGTDVVECFYPLHLNEYL
SPKLYNEFYWPYLNEVLHKV
ADMGQVNFVLFEGRHDAHLE
TLLEAPKKKVVGVFEKTDPR
KVREVLGDHVILVSGPPNSL
LIGGTPQKVEEYMKSLLEDC
KEGGMMIWPGVDGGISRDAR
PENVKAVIEAVKKYGTY
>_0120.001963_ YP_001301494.1 gi|150006751|ref|YP_001301494.1| biotin carboxyl carrier protein [Parabacteroides distasonis ATCC 8503]
MRGGMIMSKALATYFATVND
IPDTEFKVEILEDGPIKKVS
VNGTVYDVDYNLGGDTIHSI
IMNHKSHGVQISSVGDSTYE
VKNKGDYFQVQVIDELKKLR
LSRTSSKTVGRQVIQAQMPG
VIQKVYVKVGDEVKAGDPLC
VLVAMKMENEIRTPIDGVVK
EVYVNETDKVSVGDKMLVVE
>_0120.000996_ YP_001304148.1 gi|150009405|ref|YP_001304148.1| putative polysaccharide deacetylase [Parabacteroides distasonis ATCC 8503]
MILLSFDIEEFDAPLEHGVE
LPFEEQMRTSVEGTRKILAC
LARHRVKATFFCTANFALHA
KDLILDIQKGGHEIASHGFY
HSSFETADLRKSKEALEELT
GQPVNGFRMARMMPVEEEEI
HKAGYLYNSSLNPTCIPGRY
NHLGQPRTYFMKDGVLQLPA
SVTPIVRFPLFWLAYHNLPA
TLYRKLALWTWKEDGYFLTY
FHPWEFTSLSDRKELKLPFI
MTNHSGCGMERRLDALIRFF
KDKRAPFGTYTQFSQEILSK
SHGQE
>_0120.000747_ YP_001303543.1 gi|150008800|ref|YP_001303543.1| conserved hypothetical protein, putative phosphoesterase [Parabacteroides distasonis ATCC 8503]
MIKVGLLSDTHAYWDDKYAE
YFKDCDEIWHAGDIGSDLLA
AKFEALKPFKAVYGNIDGQA
IRLQYPKVAHFKVEDVNVMM
THIGGYPGRYNPEIRKELYD
TRPNLFISGHSHILKVVFDR
SLKCLHMNPGAAGKSGFHQV
RTLLRFVIEGKDIKDLEVIE
LGNRAL
>_0116.000855_ YP_193708.1 gi|58337123|ref|YP_193708.1| cell-division protein [Lactobacillus acidophilus NCFM]
MERRQASKFYPHFNQEERPV
IDYFTGLFNQLIFKHEPILT
SFLDPGKRNILKTIVGNDAF
IQEYGGYANAEKKRVYLSEE
WVNLRPDNYQIQPYEIEYPQ
KFVKITHSSILGTLANSGIN
TDAFGDIITDDNGTWQFFAK
KELTDFFEEQVDRIGRTQVK
LKPISFKNVIVPEDDSIEKT
EIIASMRVDAVLSGISKQSR
GQIQKMIDSKLVKLNWHDIT
GSNIMVKEDDVLSLRHFGRV
LIENVSATRKGKYKVVLKLW
QTKKCN
>_0115.003687_ YP_001336987.1 gi|152971878|ref|YP_001336987.1| putative pyruvate decarboxylase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
MSEMITVGDAIARTLEQYHV
EAIYGVISIHNLPIADAVGQ
REKIRFVPARGEAGSVTMAD
AHGRFSGLGVALTSTGAGAG
NAVGALVEAMNAGTPLLHLT
GQVEKAWLDADTGFIHETRD
QLTFLKASSKRAYRISNANQ
AVAILHKAIQEAQTPPCGPV
SVEIPIDIQSAKIPLSLLTA
PLKRAPAVEPEASLVDALWA
QLKQAKQPLLWLGGGALESG
EAVKTLADAGVTVISSTHGR
GILADSHRASLRAFHNSPSV
EALISQCDFTLVAGSRLRSN
ETRSWTLELPTPRVQIDIDP
AAASRNYLMDNTLVADCRAL
LAALAARVQGRIWGDARWDS
QLKEAVEAAERGLRDQCGDY
AKLNDAIAQALPDDGILVRD
ITVSGSLWGSRLFRAHGPLM
NIHSLAGAIGMGLPMAVGTA
IANPQRKVVGLVGDGGLSLN
LGELATLAQEKANVTLLIMN
DGGYGVMRGIQDKYFGGRQY
YNELHSPDFTLLAQAMGLQA
WSVDRAEDFQAVMTEALAMP
GPSVVEVKMGQIGALRFAGP
PQKTLY
>_0115.002743_ YP_001335512.1 gi|152970403|ref|YP_001335512.1| putative bacterial regulatory protein, MarR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
MPDTPLIQQIRTASRLMVRE
LGFMSTTLAATHYSPSAVHT
LLEVSMRGEMTAAQLVTLLG
LEKSSVSRVVSRLLAAGELE
ERPCAEDARAKSLALTAKGH
DTVAKINAWGTRQVVEALDH
LDETQQHTVATGLAAYARAL
AQCRDSALADTAPQISLMTG
YQPGMIGRIAQMHGEYYARH
HDFGAFFEGKVASGVAEFAT
RLSSPANQIWLAIREGKIVG
SLAIDGEDLGQQEAHLRWFI
LDDSCRGTGIGRRLLSEAMA
FCDSRQFSAVQLWTFKGLDA
ARKLYESFGFTLIREWQGEQ
WGKVMTEQQFTRSGNIG
>_0115.000567_ YP_001335539.1 gi|152970430|ref|YP_001335539.1| putative transcriptional regulator, TetR family [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
MHYLQRDARREGIMQAAMRL
ALRGGFAAMTVRQIAREAQV
AAGQLHHHFTSIGELKAQVF
IRLIREMLDMPLVAEDASWR
ERLFSMIGSEDGRLEPYIRL
WREGQVLADSDPDIKAAYLL
TMNMWHAETVAIIEQGLASG
EFRSAEPAADIAWRFIALVC
GLDGIYALDAQALDEAAFSR
YVNKMITLELF
>_0113.003678_ YP_001086936.1 gi|126698039|ref|YP_001086936.1| TetR-family transcriptional regulator [Clostridium difficile 630]
MSELSKRDKEKIQRENEIID
KAEKLFCLNGFDNTTMNELA
KEVEYTKRTIYKYFSCKEDL
FFAVVLRGYKRLWDNVKIES
AKGKTGFEKIKLSYFAFHKF
YSVEPSLLCLMGMIGIVNSE
KSDTDMLFKEKFFSFNKFMF
DEIQGMFEIGKNDRSIRHDI
EIPTLMYSSIFTLTGFFNLL
SVTGKSYLNNFNIDEEKFIE
TTLALLIDSIKA
>_0112.001293_ YP_910275.1 gi|119026430|ref|YP_910275.1| probable sugar kinase [Bifidobacterium adolescentis ATCC 15703]
MTQEQVAVTAEKIRAGKTSL
GIEFGSTRIKAVLIDDAYHT
IAAGDYEWASHLEDGLWSYT
QEEIWKGLQTAYARMAGDVE
TAYGERLTHVGHIGFSAMMH
GYLAFDKSGELLVPFRTWQN
TNTHEAHEKLSELFQYNIPE
RWSVAHLYQAVLNHEEHVSK
VDYITTLAGYVHWKLTGEKV
LGVGDASGMFPIDPATHTYE
TEFIKRFDAIEEVAAQPWKL
ENLLPRPLVAGTPAGTLTAE
GAKLLDPTGTLQPGVVLAPP
EGDAGTGMVATNSVRVRTGN
VSAGTSIFAMVVLEHKLARL
HPEVDLVTTPAGDLAGMSHA
NNFTSDLNAWVGLFGQFAAA
IGQPVDAGTLYGTLFRAAIA
DDVDADCGGLLNYPFRSGEF
LAGLPEGRPLFARSPEARMS
LGNFMRTQLFSAFSPVKIGM
DVMTKDEGVAVDSLVGHGGI
FTTPKVAQKILAAAFDTPIK
VMATAAEGGAWGMAVLADYL
WHADQPLADYLDTRVFADAA
STTEAPDANDVAGFEAFFDR
FRKGLPIEHAAIESIPLETK
>_0110.001163_ YP_001300047.1 gi|150005303|ref|YP_001300047.1| glycosyltransferase family 4 [Bacteroides vulgatus ATCC 8482]
MKVLMFGWEFPPKIYGGLAV
ASYGITKGLSLQGDMETTFC
LPKPCGDEEKFLNIIGMNQV
PIVWRDVDYDYLKSRLSTST
PEQYYAFRDHIYSDFSYMHV
NDLGCMEFAGGYPGNLHDEI
NNFSIIAGVVARQQEFDIIH
AHDWLTYPAGVHAKLVSGKP
LCIHVHATDFDRSRGKVNPT
VYAMEKNGMDHADCIMCVSE
LTRQTVIHQYHQDPRKCFAM
HNAVYPLSQDLLDIPRPDHS
KEKVVTFLGRITMQKGPEYF
VEAAALVLKRTRNIRFVMAG
SGDMLDAMINLAAERGIADR
FHFPGFQRGRQVYEAYKNSD
VFVMPSVSEPFGIAPLEAMQ
CGTPSIISKQSGCGEILDKV
IKTDYWDINAMADAIYSICT
NPSLFQYLQEEGKKEVDGIT
WEKVGLRIRALYEQVLKNYG
K
>_0110.000965_ YP_001299680.1 gi|150004936|ref|YP_001299680.1| glycosyltransferase family 4 [Bacteroides vulgatus ATCC 8482]
MKILQINVFNYRKGGSEVVY
FSTMELLRMHGEEVVNFALR
WPENYPSEYESYFPESKETR
SELLKPVKNIINYFNNREAA
RKLEQLIEKERPDLAHMHLI
WGQITGSILPVLKRHNVPII
FSIHDYRIVCPAYTFRNGKG
EICEQCRGRNFYHCVINKCT
KDSYLLSVMMAIEQCYRNRF
FNPAEYIDGLIYVSQFAKQM
HEKYMPELKEKRNIVLYNLA
DKILDAPAQKTDRYFLFFGR
LSYEKGVKTLISAFKDMPNC
NLKIAGTGPLEDELKDYTKS
NNVTNVEFLGYKSGKELTDL
VENAYFIIVPSEWYENNPMT
IIEGYAAGVPVIGTNIGGIP
EIIEEGVTGYLFTPANSVDL
TRVVKAADSLPVEQYSNYQQ
NALSFARKHFDREKYYPQLI
GFYNQLVK
>_0109.003050_ RER070207003051 REr070207003051
MKLMKTTEAVGQVLCHDITQ
IIPGVKKDAVFRKGHIITKE
DIPVLLSVGKDTIYIWENDE
TMMHENEAAEVLYRMSACGT
NSNETDGERHCEAAESGAFG
GTASKMHPSPVKEGKIEVIA
DCDGLLKVDSEKLKKVNSFG
EMMIATRHGNTTVKKGDKLA
GTRIIPLVIKKDKLEAASHI
CDDGPILDIKPFVVRKAAII
TTGNEVFHGRIQDAFTPVIE
KKIAEFGAQMMFHEVFDDDD
QKITDGCLRAIEAGAEIVFC
TGGMSVDPDDKTPLAIKNTG
ARIVSYGSPVLPGAMFLLSY
YDAGDRLVPICGLPGCAMYN
KRTIFDIVLPRLMACDMILA
DELAGLGEGGLCLNCDVCTF
PNCGFGKGF
>_0109.001880_ RER070207001881 REr070207001881
MTRVYFVRHAQPEHDWEEDR
TRPLTEEGKKDSAIVLEFLK
DKKIDAFYCSPYKRSMDTIA
EAADFFTKEIITDERLRERE
KGLDGNNHGMFRKRWADHNY
HEEGGESIAMVQKRNIEALN
EILSDNTDKDIVIGTHGTAL
STILNFYDNNFGCEDFLRII
DWMPYIIELDFESSCNELEF
ECPSYSFKLIGKQEHCYIEK
EFKGK
>_0109.001671_ RER070207001672 REr070207001672
VNTFLSPLSLERETECLKKV
AQNDKEAKDELILHNMRLVA
HVTKKYAVSEDEMEELISIG
TIGLIKAVSSFKADYGNRFA
TFAIRCIENEILMHFRSRKK
SRGDVSIFEPIGTDKEGNQI
HLVDVIENGQSDVVSDIEVS
ESLKILRQNMRSVLSDREYY
IITKRFGLDGEKELTQRQIA
KTLSISRSYVSRIEKAGLKK
LRKLLE
>_0108.0001669_ YP_460136.1 gi|85857934|ref|YP_460136.1| 2Fe-2S iron-sulfur cluster domain with dehydrogenase [Syntrophus aciditrophicus SB]
MVNLVIDGKKIEAETGTTIL
SAARDNGIVIPTLCHHESIE
ASGACRLCVVEIAKGGRKRI
VTSCIYLVEDGIVVDTKSER
VLGVRRLVLELLMARCPESE
VVRNLAEELGVKTQKRFKPD
KDKGKCILCRLCVKTCEDIV
GVSAIGLSFRGKDKVVGPPF
TEDSKACIGCGACAYVCPTG
HIEMTTGNGGAERTIWGRTF
KMAQCSVCGQYFAPEDQLQY
ISNKTGVPMENLTVCMNCRL
>_0108.0001016_ YP_462835.1 gi|85860633|ref|YP_462835.1| hypothetical cytosolic protein [Syntrophus aciditrophicus SB]
MTETIDARGLACPQPVILTK
KALEHCDSLTVRVDNIAALE
NVKRMAKSQNCRVTVKQAQD
GTWTLELTRESGAKEVEEGS
ELQDIVCDVAGKEESEPSLS
GPSVIVISSDCMGQGDDELG
RLLMRGFFHTLPQLDRRPDM
IIFYNTGVKLTVKGSEVLED
IGQLEQAGVEILVCGTCLNF
FNLTDQLSAGKISNMYDIAD
ALTTAGRLARP
>_0105.002057_ YP_055077.1 gi|50841850|ref|YP_055077.1| putative PTS system [Propionibacterium acnes KPA171202]
MPTPRLIVADVTATSQNDLY
AQVNDRLTADNMVKSTFLNA
VSAREKKFPTGLDFGYVSIA
IPHIDPEHVISPGLLVCRNS
ASTTFHAMDDPERNLDVQLS
IWPLVTDPGNQIDMLEAVIT
LIQDESSYRILLHGSHAEVA
NTLPDVLATVED
>_0098.002292_ YP_316233.1 gi|74318493|ref|YP_316233.1| iron-sulfur cluster protein [Thiobacillus denitrificans ATCC 25259]
MSELKPMSDNTPESAERRRV
IGGLAAAAAGLAIAPGIKLI
EVAQARPEEQGASSAVRWGM
LVDATKCATGCDDCVSACST
ENGWTPVAESAKPRQAPQWI
RKLELQDPLTQMETNLPMMC
QHCAEPPCVDVCPTGASFKR
ADGIVLVNRHTCIGCRYCMM
ACPYKARSLVHEPLNDTQKA
DVPRGVGCVESCSLCVQKVD
RGDGTTACAEACSAAGHNAI
VFGDLNDPDSEISKRLRELP
TKQVRADLKLNTGVRYHGI
>_0096.001934_ SYN_PCC7942_21JUN05_CONTIG52_REVISED_GENESYN_PCC79421887 syn_PCC7942_21jun05_Contig52_revised_geneSyn_pcc79421887
MTNFPPLLLAYGLDLEGPIH
RGIATYAKAMIRLLHQSGYP
LHLLTGAGGLAQGRLASLSL
HRHLDQPSNWSRIQLAQSYF
AERLGRSRQTPIKVDSNLII
GDRIQYLQQIDQLINHPFFY
RKLRLQAKISDRPFFLKTKN
YPVVLTSSPLNLRVSSSSRL
IQVIHDLIPLNYLRHPDEAV
TFLRRLQATADYSDRIICLS
ETTRQQFLELFPQAESRTLT
LYQPVSFSAEALALTDRPDF
AAAVLRRYGLERDRYFFFVG
AIEPRKNLETLIAAQQVAVL
RTQLPLVIGGTADVHTQDYA
QQLQQRSRSTDQILWTGYLT
EAEKICLLRHCRALTFLSWQ
EGFGIPMIEAALCGRSSLLA
NIPVLREVMGAAATYANPQH
PLEVADQLIQLGCYPAQLSE
LRSRATQQIQAFADGQVQQQ
IQQVLQSLIS
>_0094.000253_ SSUI_28JUL04_CONTIG162_REVISED_GENE255 ssui_28jul04_Contig162_revised_gene255
MLIIRSRGENLDSNKRQKIL
NLLGLAQRAGRLVSGEDLVV
EAIQKGQAKLVFLAEDAAGN
LSKKVTDKSHTYQVEVVTVF
STLELSAAVGKARKVLAVTD
AGFTKKMRSIME
>_0093.001404_ NP_342484.1 gi|15897879|ref|NP_342484.1| Conserved hypothetical protein [Sulfolobus solfataricus]
MFMMKLDELEKELGSKLIMD
NNVIDHYSKSPYLVSPVLSK
MGKRVLGVVIAEDRYDIEFV
VKFCDIHRIPLLARGAGTST
IGQVLPIHPSIVLDIQKLNK
TMEYDEKYLKISPGVKVLDA
LNYLRKRGKELQVYPSSFYI
STLGGYIAGGDVGIGSYQYG
YHFHNGGIRRVKVVGSTGTF
ELTGENTLAVAQAAGTTGII
VEADIATVDYEDWKDQLVRF
DELGKLVKFLKDVENERDKI
RRITIEDQEALSLVAKNRAI
PGKWNVILASTKSFGEEVEM
KFLDELAFAAIYVTMSRLTN
FSEYFYEVRLLSLDSFLKVV
SQVKNALGSNVLIHGDVMTL
RGETVIYTVFISDRQNFNII
DSIMTKEGIPFEIHSLVVND
RVDEEYRLELMKKYKRIVDP
HNILNPGKLRI
>_0090.003768_ YP_166107.1 gi|56695756|ref|YP_166107.1| glycosyl transferase, group 1 family protein [Silicibacter pomeroyi DSS-3]
MRITFLSPRSNLSGGLRVIA
IYARMLRARGHEVTLVTPAR
AQPGRRQKLRALLRGQASNS
PEPPGHLDTLDLPVIETARA
DFHVDPDEIPDADVIVATWW
ETAFAAAAMPPEKGRKFYLI
QHHEVHDFLPWQISRATYYL
PLTPIVISNWLDGILRRTYG
RDDARLVPNGIDLTQFHAPE
RGKAARPTVGFLYSPHPIKG
SDTALAAIALLRQRFPDLHV
VAFGAEPVTPDLPLPPGADF
HLRPAQERIRDIYAACDVFL
CASTAEGFFLPLLEAMACRT
PLVSTRVGAAEDLIEPGVTG
YLADVGDASALAEGAAHILS
LPDGEWRAMSARNHKIAQGQ
SWDHACDLLESVLSGEGRS
>_0088.002579_ NP_717372.1 gi|24373329|ref|NP_717372.1| transcriptional regulator, AraC/XylS family [Shewanella oneidensis MR-1]
MNTEHAAYQIANELGGLELL
NAHYHKQNFSRHTHEGYTVG
VIETGAQRFYRTGGNHVAPK
HSIILVNADEVHNGCSATED
GWSYRAMYPVPAQFANINKE
LASNRGAPYFPNPVVYDPQL
AELLRLTFTTLDTSDNRLLR
ESLVYSSLTQLMARHGRNYP
CEHLGANAKPALALVKSFID
DHPAADISLEDLATLAGLSP
YYLLKQFQHYYGLPPHAYQI
QARVRLAKAKIKQGTRLLDV
ALDCGFHDQSHLNRHFKKTV
GVTPGQFAKEIGRNFIQA
>_0086.002022_ ROSE_TM1040_30MAR04_CONTIG53_REVISED_GENE2024 rose_tm1040_30mar04_Contig53_revised_gene2024
MPPKPVLHRDNPDAEPLIGN
IKVTREDWLKMGLDVLIRDG
EERVKVLALAEAMGVSRSSF
YWYFKSRQDLLDALLTCWEE
TNTAGLIRQANAPAERITGA
VLNVFRCIANPNLFDTALDF
AIRDWARRSEPVRARMRAGD
DARVAALTMMFARYGCAEME
AITRAKVLYYMQLGYDMAEP
EESYAYRLSMTPEYLKVFTG
QTPTEAELREFEDYSRQFWR
DVSP
>_0084.003685_ SFRI_16AUG04_CONTIG90_REVISED_GENE3692 sfri_16aug04_Contig90_revised_gene3692
MKNHKYRLTMNSYFNKNACQ
DADAREHSLFTKLPDFLNFA
KHECLHYQQTLNNIDVDKID
SRALLAKLPITRKSDLINLQ
KLNPPLAGLNAASAKFHRIF
QSPGPIYDPEHCTDDWWRLG
QAFHAAGFKQGDIVQNCLSY
HLTPGGFILDSGARACGCVV
IPAGPGQTEQQLDIIEDLKP
NGYCGTPSFLKILLDKATAD
NRDVSSLQKALVTGEALPTA
LRREFDAAGISTLQAYASAD
VGLIGYETIADDGFIISEDV
IVEIVRPGSLLPVADGAIGE
VVITSFNRDYPLIRFATGDL
SAIKAGESACGRTNMRIKGW
LGRADQTTKVKGMFVHPEQV
DKVCQSDACIIKARLVVSQV
NHQDKMHLVCEVIESALRDG
NEQVLKDKIAQTLKTVTKLT
GSVELVPLNSLPDDGKVIDE
QRDFD
>_0082.000966_ NP_764421.1 gi|27467784|ref|NP_764421.1| cell-division protein [Staphylococcus epidermidis ATCC 12228]
MSLGIQRDQLGDIIVGEDIQ
FVLTKQLESYIISELTRIKG
ASVKLNSIPTEDMIQSEENW
KVHSTTVSALRLDVVLKEMI
HKSRNIAQQLIIKKRVKVNH
TIIDSTDFQLEQNDLLSIQG
YGRAQIVEIGGKTKKNKLHI
HYQTLFK
>_0078.003159_ NP_827957.1 gi|29833323|ref|NP_827957.1| putative TetR-family transcriptional regulator [Streptomyces avermitilis MA-4680]
MSHLVYACLMAVDREHVLRS
AADLLTRKSTATMDEVAKAA
GISRATLHRQFAGRDALVRA
LEELGIRECEAALDAARLEA
GTANEAVRRLVSEIEPAARL
LAFLYTENQLFEGDAQHEGW
ARLDARIAALFRRGQESGEF
RIDLSPAWLTEALYGLMASG
AWAVLDGRVAAKDFSYMTVE
LLLGGALRREES
>_0076.001369_ SAMA_14OCT04_CONTIG18_REVISED_GENE1370 sama_14oct04_Contig18_revised_gene1370
VFDHKAFLKTVSSASGVYRM
YDAAAEVIYVGKAKDLKKRL
SSYFRTNLPNIKTQALVSNI
ANIDVTLTHSETEALILEND
YIKQYMPKYNVLLRDDKSYP
YILLSGHKHPRLAYHRGAQR
EKGEYFGPYPNGGAVRESLN
LMQKLFPIRQCEDAYYRARS
RPCLQYQIGRCSAPCVGKIS
DEDYDEHVRLATLFLRGKDQ
QVIGSLVRQMEAATLAMAYE
AAARYP
>_0076.000495_ SAMA_14OCT04_CONTIG101_REVISED_GENE496 sama_14oct04_Contig101_revised_gene496
MKIQFIATVVGPLGPDVLQS
LAKVSREQGAEWLSSKLIMQ
DGQFAAMMKVSIDDDKEAAL
RDNLAREFPTLGFVYAPVAA
VEGPVQQIQVELDCNDRPGL
TRDVNNVLANLGVSVSHFES
HRVQVTSLGRTLFNASLSVA
LAPEMDIATLTSALEAVEPN
ARVHYREMAFAAHRV
>_0074.003680_ RRUB_10JAN05_CONTIG98_REVISED_GENE911 rrub_10jan05_Contig98_revised_gene911
VRRADPGVRGSPAMTPKIEA
LFNDALIAAAARTPRGPTPT
HADFHVHRDNPFCGDEVSID
LVLGEDGRIATATVRARGCL
LVEAAATVLAEAAPGLHPCD
IAEAARHLRAMLKKNTPPPG
APWATLEMFSAISSTPSRHS
CALLPFEAVEKALGGPLVQS
SLCKK
>_0073.003015_ YP_296479.1 gi|73541959|ref|YP_296479.1| Rieske (2Fe-2S) region [Ralstonia eutropha JMP134]
MPESGIEGMAAARFLCPADA
LVDGGSGVRFTVELNTRQVG
AFAVRFDGAVHGYLNQCAHV
PMELDWLEGQFFESSGLYLI
CATHGAMYEPDSGLCVGGPC
RGASLAKLRIEERDGNVFWV
PEAPYHPADTADNA
>_0071.000019_ NP_743060.1 gi|26987635|ref|NP_743060.1| ferredoxin reductase, putative [Pseudomonas putida KT2440]
MPEICVGERRWLVPIGSNLL
DALNEAGLNVPYSCRAGSCH
ACLVRCLEGQPADALPEALA
LEKHAQGWRLACQCRVVEDL
RVALYDPQQGGVPAQVCALD
WFGDVLRLRLRPDRVVRYQA
GQHVVLWLGAVARPYSLASL
PGEDDFLEFHIDCQRPGAFC
DKARGLQVGDEMRLGEFRGG
ALHYDPDWQERPLWLLAAGT
GLAPLWGILREALRRGHRGE
IRVVHVARDPAGHYLAEKLL
KLPGVSVELVLVEHVDEALA
GMRLLSRQTVALLCGAPGSV
ERFARRMFMAGVPRGQVFAD
VFVEHA
>_0069.001701_ NP_895746.1 gi|33864186|ref|NP_895746.1| glycosyl transferase, group 1 [Prochlorococcus marinus str. MIT 9313]
MTAALPAGSDLVIVLPHLGP
GGAQKVALMAAEHFLVQGRQ
VTLVTLLPDKPLSHAVPEGL
RWVDLGPAVAETTSNRAPIA
RIWRFSCTWGRRSLAWISLV
IGWKVLKRLVPGQAPLFVQW
LVSSASGVQATLLRDLLYAG
KPARVLSLLTRTNLLCCQAM
WALPGHLVVSERNDPRLQKQ
SFPWLRLRSWLWQRADVITA
NTIGVLEGLQHCHPAMADDM
RLLPNPLVVDSHPGNHSDEP
ASGTCFLAVCRLVPQKGIDL
LIQAYAQLPEPLREMWPLLI
AGDGPERASLETLASSLLPR
GQVRFMGFQRNPQVLYHRDA
VFVLSSRFEGMPNSLLEAMG
SGLAVIVSDASPGPLEVVVH
GKSGWVVPTEKVTLLAEAMQ
AMAENPALRCRLGDAAAEFM
DAYSWDTLDPIWSDILCLEK
PG
>_0062.000448_ OOEN_16SEP02_SCAFFOLD1_REVISED_GENE23 ooen_16sep02_Scaffold1_revised_gene23
MSELKIPGKLMLAGEYAVTL
ANHLALVFSIDRFISKNYSQ
LVNEKGVKYGLGSSGAYAVL
MTKMENSSLSDKDIFRQALI
LSRQTQPQNSGADIAASTYS
GLLLYKNGSFPERIFFPENW
NLIVGWTGKPAITSELVKKN
QLSSFFVKESDMIVRKMVDF
IKAKDFEKFNQEIFLAEKNL
EKLSGVLTDKLAKAIEIAKN
FGIEAKISGAGGGDNVIAFT
RDPKISQQIKNNWQEAGIIP
LDLHVYYKK
>_0061.007001_ NPUN_22DEC03_PLASMIDB_REVISED_GENEPNPBF153 npun_22dec03_plasmidB_revised_genepNPBF153
MQIIMYLTKVFYKVGDIPIF
NPLYIHAYIIHQWLLNFRSQ
PLSVNQKSAIIFPPHQDDET
LGCGGLIALKREMGIPIKVI
FLTDGQKSHTAIPWVQPLEN
LIQVRKQEATTALHILGVEV
SDIHFFDLIDGTLNHLSNEQ
YQNTIKHLVELIQTFNPGEI
YVPHRKDNHPDHECTYKFVK
AAVEQSQIELEIL
>_0061.000837_ NPUN_22DEC03_CONTIG1_REVISED_GENENPF1648 npun_22dec03_Contig1_revised_geneNpF1648
LTQKRGFGRFNLAVYWKRKY
RNKQETEPWYLLTNLPDLET
AAQIYGARFGIEAMFRDCKT
GGYNLEGSKANPDRLVRLIF
LIALAMTSAWLHGQRTKLQK
QESYICRTQEKSRTSKRHSN
FWIGLYGQNWIVAWNECQAW
VEELVASIRNKQSFYLRGLR
AMKLIQKAL
>_0056.000175_ SARO_25NOV03_CONTIG22_REVISED_GENE189 saro_25nov03_Contig22_revised_gene189
MDGISNVTAGAAKGVISKGR
RTANRILDVAEELFARKGYG
ATSLRDIASQVGLQQPGLYK
HFSGKEDLYRQVYERALKPM
IDLMDEILMRPNSDFSDLTD
HITDLLAAHPNIARLLIRAA
ISSDSEPDPVGLDWLHRMIG
YGRKMNEKAGLPSSEEALGV
QIVAIFNMLFGFFWASPLLE
SLSGRKATAPQAMAIQRDLL
RTFVRSLDQTSAPVLPHPTL
AR
>_0054.000223_ NP_988503.1 gi|45358946|ref|NP_988503.1| coenzyme F420-reducing hydrogenase delta subunit [Methanococcus maripaludis S2]
MDLERHKLTYGNHKKNHFNG
IDMEYSLTPSYLLKENMVLA
CGNILFADDGFSVHVIEKLQ
EILTEEEKENIALVDAGAGA
PQQVLTLIDSESKTKKIIVV
DIIDYGLEPGEIKILTMDDL
PKPDHTKVDSHDWPLSTTMY
RVVRDSPREIDFKVVGCQKK
YVSEPDVVLELSEEVQNAVD
VAVDIVLSELRGKPIN
>_0049.001969_ NP_785729.1 gi|28378837|ref|NP_785729.1| phosphoesterase (putative) [Lactobacillus plantarum WCFS1]
MQYFTSDTHFYHADLLGDND
FAPRLFPDVETMNQAIVDHW
NARVTDQDTVYHLGDVALYF
TRPAKLSYERVFALLAQLNG
KIIFIKGNHDSRAFFKYLAA
HDPQLNGQPKFEFHDVGVLI
KYDHRQYYMTHYPMMMGIVK
QIINLHGHIHHYAVNVKETS
TWGSIHQKSITWTIRCPLER
HFHWPRSSRWLTVKPLILPS
ASKRVLDRLW
>_0043.001088_ JANN_22DEC04_CONTIG21_REVISED_GENE951 jann_22dec04_Contig21_revised_gene951
MDSTDRKILDLLQKNAKTSI
QQLSETTGISTASVQRRMRA
FREAGIIKREVAILDPTQIG
LGITAIVSVELERDRLDQID
AFKRKARNDRQVTHFYCIAG
EADFILVVMAENIAGYEAFT
HRFFFADKNVRKFRTSIVVS
TEKATSELPI
>_0043.000038_ JANN_22DEC04_CONTIG11_REVISED_GENE39 jann_22dec04_Contig11_revised_gene39
MALSDRIPYQAIVDRPRLHL
PGDKRVAVWVILNVEEWRIE
NPMPRTVLPTTMGQPLLPDV
PNWSWHEYGMRSGFWRQWKA
LVDRNIPVSLAINGNVCTSY
PRVAGAALEAGWEFMGHGFL
QGPMHRLDDQEGAIAQAMDG
IEAFCGTRPRSWESPGLTET
EDTLDLLRAAGVDYVADWVI
DDLPQDIDTPHGRITTLPYS
VETNDIAVYALQGHRSDEFL
TRGRDQFDRLYAEGAENARV
MAISIHPYITGVPHRIRYLE
ELLDYVGGHEGTAWMTASEI
GDWYRAEMARIDGGT
>_0037.002456_ NP_953432.1 gi|39997481|ref|NP_953432.1| methylcobamide:CoM methyltransferase-related protein [Geobacter sulfurreducens PCA]
MTSFERVMAAMGGVETDRPP
FTLTLSLYGARLIGASPEQY
YTSPRLYAEGQDRVAELFGP
DILFAPFALAREAEAFGSTV
VYHRHGPPNVVKPVVKNAAD
FMRLADPDPDAHPALLYLRE
SVRLLADGYKGRVPLAGILT
APVDLPAIIMGIDAWLETLL
FEPELASAVLEKTGRHFVAM
ASRLLGDGADFVAMPVMFFN
TALVTSRIAAERIVPALAAA
FAQVPGPLVFHHGGNRIAPF
LGELAELPGVAGFVIDPRDS
FQDARARVGDGRVLLGKLNG
PLLGLLTPDDACRVTAEILA
DRRDDRHFIFASSAADVPWN
TPPETISAVADTIRQWQRHG
Q
>_0036.002616_ EXIG_01APR05_CONTIG285_REVISED_GENE2617 exig_01apr05_Contig285_revised_gene2617
MKASLLLQTALRHFAQHGYE
GASLQEIAQDVGIKKPSIYA
HYRGKDDLFLTAMRYALDTQ
KTHLATYFISTRHLSLEQSL
KGFFDWFLEESTQNDQLKFI
LRIAYFPPVKLEREVTDLIN
PFFDTMQRHLTRLLRERNRT
EQILYSDDYASAALAYLTVT
EGTMTEFVFNGVAAYERRFT
AVWPIFWRGLVR
>_0035.002689_ NP_814093.1 gi|29374940|ref|NP_814093.1| transcriptional regulator, GntR family [Enterococcus faecalis V583]
MLLEIDEQSEQPIYQQLIDQ
IIVGIAKGELVPNESLPSIR
QLADEIGVNMMTVSKAYNKL
KQSGYIVTDRRNGTKIAAKL
PATAVWQQQLHERLELLLAE
SFLHQQSEAEIQALIQKIYQ
NFDSKGRAL
>_0032.002843_ YP_012257.1 gi|46581449|ref|YP_012257.1| glycosyl transferase, group 1 family protein [Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough]
MHILLFHFDESCPASVRQTF
LLARDLSAGTAGDVTLVCTA
GGFLEREARSVDVPVLPVGG
LTGKPLTLMRLVRAVRSREA
FVLHCCDTASAALVRQLKRL
SGGRCRTVQTWRVVGGDAAR
HVERVCRHADAVLCHGEMVC
DRLERHGVPRSRLFAVSPAV
DAGHYAPRRPRGDGRCVFVV
DAPLAASSGHGIVLAAMRLL
ATMPGLPEWEVRLVGDGPDF
ASLLATARQTGVDTHLAMLG
TQDERRILPDADVLLAPSLD
GEHGADAIRAAWCVGLPAVA
SSLDVHTGMVRHDETGLLVP
VGDADALAAVMARLARDVAG
DGAMAAGLVAGGRAEVLRRT
PERLAAAHLDIYREQAGAVR
RSLQSAGV
>_0030.000886_ DHAF_12NOV03_CONTIG1044_REVISED_GENE987 dhaf_12nov03_Contig1044_revised_gene987
VLRLSGISRGFLRWNYGKSL
KKKILNGVRKVTSETNNYLL
ELTQPEAEAILRRSQLAIIP
NGSVEQHGPHLPCGTDHYCI
MAIARKVASGLDGLLLPFSH
TGVTPFHASFAGTLTLRQET
YVNLLLDTAVSVINHGVQKI
LFVNWHEGNTTSINYAASQL
QKEYGVTCVVAQACYITEQL
YKGEADLTHAGALEVLPVMA
YRPDLLKLERATNPSPYEAA
KEVDALRRSKSVYPILKDIR
QIAPTGWYGDLDIVSEEKAA
ELVERVSGEIITAAQQVFER
MQ
>_0028.000591_ DDES_06JUN05_CONTIG143_REVISED_GENEDDE0592 ddes_06jun05_Contig143_revised_geneDde0592
MPEPVLVIVKYCDPSTGGEG
VAYRFCRYMQSRGVPFQLVC
GRNKDPHGPLAEHVVELGML
RPTRLLKYASFFRRAERYIA
CTRGVPFSFEYVRGAAIVRQ
TGVHAIFLRRSLEGLPEKEK
RRKMRSRWWNLYNRYVPAQE
RRVLDSAELQRILVPSGMTR
DEVCQSYPQHCHKVTVIHNG
VDTERFHPADEAARAAARER
YWPGAGARRIVGFAGNIFMR
KGLAHCIGSLRGLPEDVVLL
VAGGDNAAPYRQQAAALGVE
HRVRFAGAVADMPQFFHALD
AFCLPTRYDPFGLVIAEAVA
AGVPVVTSHLAGSAEIVQDG
VTGAVCRSLDDSAVAQAVDK
ALRLDRSGIAASAPDERDMF
ARYLALADNVRAARRPVRP
>_0024.000361_ CHUT_08NOV04_CONTIG199_REVISED_GENE1323 chut_08nov04_Contig199_revised_gene1323
MNLHMKNIVLGLTLLIVAWS
CNKESGKNTPDNVFYTCSMD
PQVMEKKPGKCPICKMDLTK
VIIDKNDMQSGLKLNNEQEQ
SANIKTLIISEGDLGREKTV
NGRIVINENKRFKISSRVSG
RIEKLYIKSLGETISKGVKL
YDLYSEDLLVAQREYLIAIE
KSKEFSGSELDYIQLADGAK
NKLILWGMNENQIKSLINKK
ELSNTVTIYSPYKGVVTSVN
KREGDYVMDGDVVFETADLS
TLWVEAELYAGEVNEFDVND
PVAIKIIGFPGKIWNSRIDF
FAPQLQTQSKVNLVRAEISN
TDMSLRPGMQANIVLKENTK
KALFLPLNAILQDSKGATVW
IKEKDGSYHSRMVITGIESN
DNIEIRSGIEAGEEVVINGA
YLLNSEYIFKKGTNPMAGHD
MSNM
>_0021.003048_ NP_421967.1 gi|16127403|ref|NP_421967.1| glycosyl transferase, group 1 family protein [Caulobacter crescentus CB15]
MTTILHAMLGKGLGGLEQVF
LDYQPILEAWAARRGGRCVG
VVRKGGKMAVAQANRTPPLS
AMPALTDWDPITVGAARALV
KTYRPALIFSHGQRPARVFD
KAAPADVVRAVCLHKPSFDV
TPGTHYVCVGQHLAALAIER
GAPADHVWLVPNAVKPPGVE
AQPFAEAGRPIRIVAAGRLH
PKKGFDVLIHAVGKLRAWDY
EVTCEIAGEGDERGALEGLI
RDLDLEASVTLKGWTGDVAG
FLATGDLFAFPSHQEGFPLT
LLEAMAVGLPVVASEIDGPL
EILTDGRDGRLVPDNDPDRL
AEALAELISDRETAVRLGAA
ARQQVLTEYSPQELARRLEA
ALDGMTSRA
>_0021.002926_ NP_421763.1 gi|16127199|ref|NP_421763.1| conserved hypothetical protein [Caulobacter crescentus CB15]
MRHTLCVVHPMPTDTDIFES
LRQELRRGTLILAVLAQLRE
ERYGYSLRQALSGVGVEIDE
GALYPMLRRLEAQGLLASEW
REEDKRKKRFYQLSSEGRAV
LARLADEWRAINAALEPLLE
PAPSDGHQKG
>_0020.001336_ CAUR_25MAY01_CONTIG1108_REVISED_GENE1979 caur_25may01_Contig1108_revised_gene1979
MIVSHLANLQRSYHHIVLSP
HLDDAALSCGGSLAAAVAAG
EPVLVVTICTATPPTDMQFS
ALAQQFHADWGLSPTMVMQT
RCREEETALSILGADGVWVG
ALDAIYRMPEVYNSRAALFG
EPAAGDPLFTTLHDLCHQLR
HRFPHATVYAPLGVGNHVDH
QLTCLAAATIEGPVMWYEDF
PYVVRPGALEQRLDILDWPL
RPLVRTIDERMTTRLAAITA
YASQLAELSRSQLGHPIANG
EAVDVMADAVRTYARQVAPP
GTLYGERFWVRSGDCRYT
>_0019.002945_ NP_346893.1 gi|15893544|ref|NP_346893.1| Molybdate-binding protein [Clostridium acetobutylicum]
MENKTLTPLDVAKILRISKN
TVYELIKRGDLNCYRVGKKI
RIDSKDVELYKHKCKTNTKK
APNSLQNTRKNINENFLQSN
GNIPNGSFIICGQDILLDIL
SRYLQIHPSGTTALRSYVGS
YSGLLGLYFGKIQIATAHLW
DGDSGDYNIPYVRRLVPGIH
TIIINLAFRTMGFYVAKGNP
KNITGWEDFRRDDLTMVNRE
RGCGTRILLDEHLRLLNIDG
NKINGYSRESLSHLAIASII
SRNGADIGIGNEKTGLQVAN
IDFIPIQRERYDLVIRKDDI
EKPPFKAIIDILQSETFKSE
LMGIGGYDLTQTGTTIAEM
>_0018.001044_ BFUN_06OCT04_CONTIG480_REVISED_GENE678 bfun_06oct04_Contig480_revised_gene678
MNDVQGFIARLGDMPVISDP
DVVRRRSRDMSMSFSPIIRR
DAADKVAELIVRPRDKADVL
GIASAAARTRMPLMMRGAGT
CNLGQGVPLRGGAIVDMTAL
AQVLWTKPGRVRAQAGTRLI
DIDATTRASGWEIRMHSSTK
RAATVAGYIGGGHAGIGSCT
YGILRDRGNILGLEVVSVEE
APQVIELRGDDVNLVHHAYG
TNGIITEVELPLAPAWPWVE
AVVNFRGFMDAVHFAYALAA
SDGLIKKLISIDEFPNWQYM
EAMRPFGRDGHSMVRCMIAE
HCMEGFRGLVTEAGGAIAVE
APEGQGPYGAPLWEFGWGHA
RIQVNKTRPDIVNNIGLYLD
PNLIDAVERSYRRFQGVGGM
HLEVKRYGGRIAFQGSPYYG
FVDEAQVAGVISGMIEDGAM
VANNHTFFVKENGMKHVDER
DADFKRRMDPYGLMNPGKFE
ADDIEPKEGAGLALPTTGWS
YDGASAPQTSASRG
>_0018.000787_ BFUN_06OCT04_CONTIG480_REVISED_GENE446 bfun_06oct04_Contig480_revised_gene446
MSTPANAGNTNGTSHAFPLD
GEDVPFEPGDTILQAARRAG
RYIPHLCWHPDFHPQGSCRV
CTVKVKGRPGSACTMHAADG
QKVESNTDELNAERKMLLQM
LFVEGNHFCPSCEKSGNCLL
QATAYEMNMEGVLFDEFYPR
RPIDASHPDVMIDFNRCILC
ELCVRASHDIDGKDVFAIAG
HGSGTHLVVNSVSGRLADTE
MDLADRATSICPVGAILPKR
RGFLIPIGERRYDPQTAADP
DTQEAS
>_0017.002570_ NP_810016.1 gi|29346513|ref|NP_810016.1| RNA polymerase ECF-type sigma factor [Bacteroides thetaiotaomicron VPI-5482]
MPSPGYLNSKINIMRGFDFD
KALVALQNELHCFAYKLTAD
KDEAENLLQETMLRTLDNKD
KFDSGTNFKGWMYTIMRNAF
INNCRTKKIRGNLYVLSEPE
YHFLLRDDSFIFVDNGHDAK
EIREALKTLPKAHYVVFMLY
RSQISGNSRKDRSVTEYDKK
PYLL
>_0016.003983_ YP_441364.1 gi|83719988|ref|YP_441364.1| transcriptional regulator [Burkholderia thailandensis E264]
MGLTLMVAVPARHPLLAHKY
LPLEEVLHYPLVLGDPHACE
GFARQVDRILRRVDREPIVA
EWVASIDLMMALVSAGFALG
LAGTSQIVASREPGIVARPL
AGRAPMLTTYLLRSDNEPSQ
VLARFIERVSNLESLAAKKA
VVSFDPDAREE
>_0009.003367_ NP_244217.1 gi|15615913|ref|NP_244217.1| transcriptional regulator (Lrp/AsnC family) [Bacillus halodurans]
MERKELDVLHILEENGRVPI
PTLAKMIDATEEEVTAIIKK
LENDHVILSYSAVIDWSKVK
EVETVTAMIDVKVTPQRGVG
FDEVAERIYRFPEVKALYLM
SGAYDLSVVIEGKTMSEVAR
FVSEKLSTIDTVLSTTTHFQ
LKKYKHDGVVFKKDEDDKRI
VVTP
>_0006.003545_ NP_889419.1 gi|33601859|ref|NP_889419.1| hypothetical protein BB2883 [Bordetella bronchiseptica RB50]
MGNLKDLHPPVARGQAHTAK
GARVALQNLWGAAGLPDEAL
DHVELHGAEPVLPSSFAVGT
AAQASIAAAALAAAEIWHLR
GGQRQRVAVDMRHAAQECRS
YFKINGVTPNIWDKITGVYP
CGDGGWVRIHANFPHHRDGA
LALLGCPPGEAATREMVERA
LARWRAGDFEQVAADAGMVV
AAMRSFDQWDRHPQGLATAS
QPVVRIERIDNADPRPLPKY
GHEATPLQDIRVLDLTRIIA
GPVCGRALAAYGADVMLINS
PHLPNIDNIIDTSRGKLSVH
ADLETADGRIALGNLLRSAH
VFVQGYRPGGLQALGFGPED
AARIRPGIVYVSLSAYGDSG
PWAGRRGFDSLVQTATGFNH
AEAQAAGQEAPKAMPVQILD
HASGYLMAFGALAALARQRI
EGGSWHVRVSLASTARWLRE
LGRVPDGLACPMPPIEELLY
AEESGFGELTAVRHAAQFSL
TPARWTRPAMPPGSHPTVWP
FR
>_0006.003209_ NP_888734.1 gi|33601174|ref|NP_888734.1| phage-related exonuclease [Bordetella bronchiseptica RB50]
MNRYILSPHEQGSDGWLLDR
CGRVTGSRAADMLAMTAKKE
WSTKRADYKFELAIEVLTGM
PQGSDYTSKEMQWGIDQEPF
ARMAYEEASGNVAIESGFMY
LPDVAAGCSVDGLFVEDGRR
GVLETKCPKSTTHIRYLEAG
TLPDQYRPQCLHNVWVTGAE
FADFVSFDPRFPEELQLFVC
RFTPTAKELADHEKAVLQFL
AERDELVAQLKRLAA
>_0006.002379_ NP_887126.1 gi|33599566|ref|NP_887126.1| TetR family regulatory protein [Bordetella bronchiseptica RB50]
MQNTVDESSLVTRRRAQLVK
AAIKLFSRMGYHAATVKDIA
DEAGVSAGLMYQYVSDKQDL
LFLALQHIVQRNKEEMPLAL
KGVEDPIARLYRAIDAYTRV
IAANQQAVLLTYRETKSLKP
EYIEQMKELELETNQLITEC
VTDCIRAGYLAQTHEELLVY
RIIVAAHAWPLKHWRLRHIV
TLDEYLEQAIHAPWMGLLLP
RGTSRYEELRRAGELCPTRI
ASEPEVEDADQAPAPKAKKR
ARRSRAA
>_0006.001525_ NP_890103.1 gi|33602543|ref|NP_890103.1| putative decarboxylase [Bordetella bronchiseptica RB50]
MGAIAAHETGDTAATAAWDE
TVWRILKKEDIRLVTYVPDK
VLKPLIDRVEADDHFQVVCP
AREEEALGIVCGAQMAGMRS
ILLTQTSGFATLANVLASLP
VPYEIPVVMVISERGALGDR
QLVQVRVWQTMRPILDSLGI
PHHTLTRADEVEFVVEEAIR
QAFATRSPAALILSPKLTKK
SSD
>_0005.002927_ YP_325300.1 gi|75911004|ref|YP_325300.1| Squalene/phytoene synthase [Anabaena variabilis ATCC 29413]
MDLRSDALQILKDTSRTFYI
PISILPSGLQEAVASAYLCM
RAIDEIEDHPTLDNPTKAKL
LRGISLTLQAGVDGFPVDAF
AAGFSGYENTLAEVTMRIRE
WSLLAPETIAPRIWDATAAM
SDRMAYWAENNWKIYTESDL
DRYTFGVAGAVGLLLSDLWT
WYDGTQTNRTLAIGFGRGLQ
AVNILRNHVEDLGRGVSFFP
DGWDANNMQEYALRNLALAD
AYTQALPDGPALNFCQIPLT
LAHGTIDAIANGKEKLSRND
VMALLEHLITFNLKAG
>_0004.004940_ 17743724 gi|17743724|gb|AAL45972.1| ECF family sigma factor [Agrobacterium tumefaciens str. C58 (Dupont)] (gb|AE008687|:280231-280593, Atu5283
MLRGLRALHGFTPGTALKSW
LFTILRNTFCTRYKVSKREC
VGLPVGIEQTMSTPASREWH
VQHQEAMRAIRDLDKDQKKA
LLLVAGGTSYSDAAAICGCR
VGTIKSRVNRARESLRRNLD
>_0004.002836_ 17741413 gi|17741413|gb|AAL43868.1| transcriptional regulator, MarR family [Agrobacterium tumefaciens str. C58 (Dupont)] (gb|AE008689|:c49814-49329, Atu3052
MSKPTAKPPVSPTDINLDVL
EDTLSFYIRTINLAVSRDLD
NRLEGLDVAKGTGKITTLLL
VDDYPGIRPSVIAHLTMRDR
SAMGRVIDQMVSHDLIRREV
SPDDSRAQELYITAAGSALA
LKIREIVPQQSRDFFSFIPE
DEQKQVIDILRRAYRHIVGL
S
>_0004.002752_ 17741321 gi|17741321|gb|AAL43784.1| Cobalamin biosynthesis associated protein [Agrobacterium tumefaciens str. C58 (Dupont)] (gb|AE008688|:c2804886-2803531, Atu2803
MAAVADPVQPFGRRGLCPAL
SAPMQTGDGFLSRVAFEADI
SPHVMVTLCGLAERHGNGLI
DITARGSLQFRGLTPESACA
LAKDVLALDLPLREGLAVET
SPLAGRDDAEIADGRFLAEE
IRKGAGALALHDKLAAKTSV
VIDGGGRLAMGDLLADIRLK
AIRLEGRTFWQLLVGGPESK
ALKAGLVEPVAAAGVVLSLL
VFLAEKGPFARGRDVDQQTV
TAICGERLLGWGSGGEARTP
SLPLGLMMTGESRFAVGVAP
AFGQIRSADLAHLCERADTF
GIDALRPSLNHSLLFFGSSS
ACEALREAAVASGFVTTAGD
ARSSIAVCSGAPGCASAFLH
THDLAAFAAEECAALLDGSF
TLHVSGCGKGCAHPAPSLFT
LAGTSDGLAFSISGRAGDPP
AGILPFEQQQTALSRLARLY
EKEHKPGENAAIFFARLGRE
EIGAALRQDNQ
>_0004.001731_ 17740205 gi|17740205|gb|AAL42763.1| methylenetetrahydrofolate reductase [Agrobacterium tumefaciens str. C58 (Dupont)] (gb|AE008688|:1748130-1749089, Atu1764
MPQQTQTSAEKRCMVTKRIM
LKLPDISAASLIPASIEASP
AQVLGPASLAGIFPRGVRVY
LTDTGAASQEKLVDAATHLR
NLGYEPVPHLAARRIPSRVE
FEEQVKRLAGEADVTDVLVV
GGGVDRPAGPFASSMDMLSS
GIFDRYGIKKIAIAGHPEGS
PDFSEETAIAALRLKRDFGE
RSDAAMRIVTQFGFDPARFI
AWAEGLAASGIDLPVHIGVS
GPAKITTLLKYAALCGVGNS
IAYLKKNALSLTTLARGHSP
DSIVGPIERHWQANPQGPIR
QIHVFPFGGLQNSADWLVSR
GSWQTRDAGRPAPADSMAG
>_0120.001187_ YP_001301455.1 gi|150006712|ref|YP_001301455.1| hypothetical protein BDI_0038 [Parabacteroides distasonis ATCC 8503]
MNKREIVGYALYQIGKFGRK
EPDFLSIYFHDPAPKTFTSI
LEWCKKKSYRFITLQECYAI
LSGKIRQEGKVAYLSFDDGW
QSNLNLIPIIDKYQAPITIF
VSIDPLLSGNFWWEYALADG
IELRNKMKLMSYKKFVSSLE
SLKKKYSLERSVLTEQELVK
IASHPLVSIQSHTMSHPILT
NCDDEILSYELNSSKAYLEN
LLHHKIEAFSYPNGNFSNRE
IEAVKKAGYKMAFTTEYIPI
QINHTNLYRIPRMAMNTYGG
YYENLSKILGIWQDILKK
>_0117.001119_ YP_795402.1 gi|116333875|ref|YP_795402.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC 367]
MRLLGSKVKQYRKQKNLSQQ
ELADGICTQATVSLMEKKDK
ILSIKIILQVCRRLNVSLGD
ILAGVGSGLDEQFDAICLDL
RQDKYTEMAARLDQVDVSTE
AASAFDRERYHYYRGFAELT
VEQRPDEAIFHFNLVLRRSF
HMAWDLYAIIGNVGMASAYL
MRQDRDQARYYLGEATSYLT
NFEWHDESSFQRLVWARYQI
ALMYLKLEQPQQALTNVEAA
LRVVKHRASLYLIDVLYEVK
GLGEQALLARTAAKRSLMIA
KTLALVTHNQALQERLNVTT
DDLPAWSDQVNGFS
>_0116.001280_ YP_194300.1 gi|58337715|ref|YP_194300.1| transcriptional regulator family [Lactobacillus acidophilus NCFM]
MENIKKNKLHQLFENLEIGI
GGVSSSIGVSQRQLRYWEKK
GYIKPINEESGVRHYSLATV
YLIAFIKDQLDAGYTLEAAV
KKSKEVRVKSMIGRRLLHDA
FDDVEITDEEKAYGKMKMGE
VVLGDKKAEVIGIVDENGSH
FELE
>_0116.000275_ YP_194591.1 gi|58338006|ref|YP_194591.1| hypothetical protein LBA1749 [Lactobacillus acidophilus NCFM]
MVAIAFYSITGQTERFIDKI
QLKAHQISDANPKYDMGQKY
ILIVPSYQDFMMDSVVDFLT
YKDNKKNIIGIIGCGNRNFN
DLFAQTAKKIAATLKVPILY
LLEFSGTNQDVKNVRKIVHD
LSAGQSTKEVQKPKELRGNI
SFLSDYRD
>_0113.002058_ YP_001088069.1 gi|126699172|ref|YP_001088069.1| MarR-family transcriptional regulator [Clostridium difficile 630]
MDYSNELKELFLMNQTYATL
FTLTNKIQIEGDKYFGILTS
RQYMTILSILHLPEEETTLN
NIARKMGTSKQNINRLVANL
EKNGYVDVIPSPHDKRAINV
KVTDLGKKVMVTCSRTGINF
MADVFHEFTKDELETLWSLL
KKMYRFNGEEQDGFEEDANF
MEYEEIDKIKSEALEEFAKR
RNRVNKND
>_0111.004388_ YP_212951.1 gi|60682807|ref|YP_212951.1| hypothetical protein BF3340 [Bacteroides fragilis NCTC 9343]
MEGINTPFVIDEHTAIVMTD
PQNDFLSENGLGWGAFGENI
QKNGTVENLRRIFEVAEAKG
MLVFISPHYYYKHDHQWLFE
GPIEKLMHDTGMFERRGQLT
GEGFEGSGADWLDLYKPYIN
EGTNIIVTAPHKLYGPENND
LILQLRKRGVNKVVVCGMSG
NLCAESHLRELQERGFEAAV
VFDATASAKLPGMDADTAAF
INFTLLAEKVYTTDEFVNEM
WQR
>_0111.003176_ YP_211426.1 gi|60681282|ref|YP_211426.1| putative ferredoxin [Bacteroides fragilis NCTC 9343]
MDYKSKTANDKEISIYYFSA
TGNSLKLSQDIAAAFGGAGL
FRMTPSAGITASDSRIVGFI
FPVYMGGLPGIVRRFLESYP
FRKGVYYFSIGTYYTYKGCA
VSVVDKIMSGKGVRLDYGYN
LPTVGNCLKEYEVSSVRRTK
ILERAELYTSRIIDDLKKGK
RKKPFPYCRLSDLLHKGLFN
AFFSRSHLNFSLENGCMGCG
VCERVCPVNNITLKNGVPRW
GTGCEACHACVHWCPRNVIQ
IGKSKGRLQYHHPAVKRTML
YRVE
>_0111.000143_ YP_210751.1 gi|60680607|ref|YP_210751.1| hypothetical protein BF1070 [Bacteroides fragilis NCTC 9343]
MNCKFEGSKVFFTSDTHFYH
GNIIRFCNRPFKDVGMMNET
IISNWNNTVGLDDIVFHLGD
FCLGGSAEWTKILDRLNGKI
YLILGNHDLKNLRQGYVDRF
EHLAMQMHIEVNKQKIYLNH
YPFLCFDGGYKDVWQLFGHV
HTRNNNTGIDATRLQHLYPT
QYDVGVDNNNFMPVSFAQVK
TIIEKQIKQSKMEE
>_0108.0000282_ YP_461465.1 gi|85859263|ref|YP_461465.1| 4Fe-4S protein [Syntrophus aciditrophicus SB]
MLKTLRREVFSKMAKIKKKI
KTIKIDESKCNGCRACEMIC
SAFHSTPKYSTINPERSRIR
MYRDVRNDLYLPVYAGEYTA
AECMGRDVYVIDGREYEECA
FCRAACPSRDIFHEPDSGLP
LKCDMCEDDPPQEVPLCVKW
CLNDALIYEEREEEVEEGIE
MEDVETGLLAMVDKYGLQKV
LDTAARVAKKGESVESKK
>_0107.000684_ AFE_0704 AFE_0704 site-specific recombinase, phage integrase family {Acidithiobacillus ferrooxidans ATCC 23270}
MTDVTLLGPWIRRFLLEYLV
RERNLSINTQRSYRDMLSLF
LPHVSKQLNKSVDRLTVSDL
SADLIRQFLSDIEESRHCLA
ATRNQRLGGLHALARFIGEN
SPEHIEWCSQIRLIPFKKTA
YPGITYLEKPEMDALLESPD
RQTPQGQRDYALLLFLYNTG
ARASEAADLRIVDVDWHAQC
AHIIGKGNKRRTCPLWPTTL
DQLRALATQRGLDQRVFLNR
NGQPITRFGIHTMVERHAAR
ACVQVPSMSTKQVSPHVIRH
STATHLLRAGVDINTVRAWL
GHVSLTTTNIYAETDLETKT
RALATCAPPTAEGMATKHWR
QQPDLMAFLHGL
>_0102.001314_ NP_111110.1 gi|13541422|ref|NP_111110.1| Predicted ICC-like phosphoesterase [Thermoplasma volcanium GSS1]
MRDIEILRDVFLSDLYCVYL
RDISAVVVSDLHLGYEEEMN
LHGLFLPRMQRDHVTHIMDK
IVERYDPEKIIINGDFKQEF
SKNLPSEWDDIIYFINRYDD
RDLIFVRGNHDNYLATILSK
KNKELLDYYEDDRYFIYHGD
KDLSTKKITILGHEHPSLVL
RDRVGGIYKLPAFAFNFKKN
VIITPAMSFFSSGTDLSQSL
LSEEHFTPSLKGMKASSFRI
FAITDEFGLVDFGYLEDLRS
SEGQQTRYR
>_0095.002081_ NP_459861.1 gi|16764246|ref|NP_459861.1| putative inner membrane protein; homology to SgaT from Vibrio [Salmonella typhimurium LT2]
MKDSVNILFVCGYGVGSSVM
LQTVVKKALAKYDFSFDMEH
TAAGEVGGFTDWADIYAISK
KLLDVVSLDPKHGQYLIPIE
NIMDGESIGKQIYDVVEKNF
PHLLNK
>_0086.001829_ ROSE_TM1040_30MAR04_CONTIG52_REVISED_GENE1831 rose_tm1040_30mar04_Contig52_revised_gene1831
MSDGRSGTGFGGESLLFLTD
EQLRQGIEAMFFAYQGFTAD
PDRILADLAYGRAHHRALHF
INRSPGTTVNNLLSILGVTK
QSLNRVLRALVEDGLVDSRV
GTLDKRERNLYLTERGVDLE
QRLSDAQRVRMRAAYKQAGP
EAVQGFKKVLEAMMDADMRR
AYTELREKSQ
>_0081.003708_ SDEN_20JUL04_CONTIG99_REVISED_GENE3710 sden_20jul04_Contig99_revised_gene3710
MISFSTGLSNRGLISESFTE
KIVKITTEELLRLFMFAPTQ
VQKIPFAGRSLYIKRDDLIH
PQFSGNKARKFQYFLTHEFA
HITKLVGYGSAQANSLYSLA
VLAKLKGWKFDYYVSHISDY
LLKQPQGNYLAALDSGANII
ALDKLVSQEVACSEFGAHAS
MGLAPLAVPRDSQTQVMPKL
ESVMQRLEATGKDNELYIPE
GGRCEYAREGIELLGEEILQ
WAKAQEIEHLVVFFPSGTGT
TAVYLQAFFNQWASSQHKPF
IEVHTCSCVGGDEYLLAQFK
QLCPQLSHYPTILNTGKKYH
FGKLYLECYQMWQKVCQTGI
EFELLYDPIGFLVLEAALQH
RYSHKDTILYLHQGGVLGNP
SMLGRYQRKYPLG
>_0079.003886_ SBAL_17SEP04_CONTIG249_REVISED_GENE3889 sbal_17sep04_Contig249_revised_gene3889
MEETKMDVVYIDARPLLGLS
TRTNNRAEMSADSAKIGSLW
QAFFESSQLTAMLNSPMYGV
YYDYESDMNGEFAVLVGKAI
DAPVEANHFTSLELEAGKYL
KFTGQGDMPQCVIDLWGQVW
GYFSANDCPHQRRYQTDFEV
YLSATEVEIYIGIL
>_0079.002481_ SBAL_17SEP04_CONTIG233_REVISED_GENE2484 sbal_17sep04_Contig233_revised_gene2484
MPEFIPFTHTDIASLVSLRT
GETKLGQCVHLANHEHTLET
ILATAKAHGASFAIFGVGED
IGPRANLGRGGATDAFTTSM
RQWLNLQSNRFLSGAECLVL
GQVNAADLQQQTASNTTDNT
NVTLDELRDAVEQLDERVIR
IVSAILKAGLEPILIGGGHN
NAYGLLMATYGHYQRQVAAV
NLDPHSDFRLLEGRHSGNGF
SYAADRGALGCYHVLGLHEL
KNSEANLSQLSEFGGTWHSL
QQIWVRREISLSQALLEIAA
KLNDTGLPVGLELDVDAIAK
MPSSASTAAGVPLLDAAHYV
SYIARHCPCAYLHLAEAAPS
CHEAGIEAGFRDVGQSLSEL
IYAYVQARMQFLAQ
>_0079.001431_ SBAL_17SEP04_CONTIG210_REVISED_GENE1433 sbal_17sep04_Contig210_revised_gene1433
VAHNIDVDELDSIAVAVEHN
DIAQMRVANIKIASINLFNF
IEPPLAYYDFENIYSHGQWQ
KKCQWLSEFLAHRQPDIVGF
QEVFSPEPLKRIASEQGLVH
FAVIDAPTLISDYIYRSPVV
ALASRYPIVEISSVEPDARL
VAAMGLSSEFAFSRKVLRAT
VEVPHIGKCDYYVVHFKSKR
AGLALEPKLIEPKRFEHQPL
ALDNLAPAASMKLHSETQLL
TEQALGRWASTMQRGAEAAL
LFNGILVRRQASKHPVIVMG
DFNDSLTMGALDALTIQGES
LHSNDIKAAGLGHLSDAALA
AVFAQYQLKDAYELFIEANL
RDSLTGYTAYHREHRAATHY
YGPKGSVLDYILLSSEFDAS
HGRSLAQVVDYQTCDRHLVR
PEYERDAYSTDHAPVIVELA
LRS
>_0078.004065_ NP_822684.1 gi|29828050|ref|NP_822684.1| putative ArsR-family transcriptional regulator [Streptomyces avermitilis MA-4680]
MTTAAPTARSRALAHPAREE
IRLEAVLHALSDPMRLQIVR
ELAADGDELSCSHFDLPVTK
STTTHHFRVLRESGVIRQIY
RGTAKMSGLRKDDLDALFPG
LLDSVLTACAHQADRLGGA
>_0078.003277_ NP_828093.1 gi|29833459|ref|NP_828093.1| putative TetR-family transcriptional regulator [Streptomyces avermitilis MA-4680]
MNNSQQRGVVRPGARGTDRS
AARRAELIAIGRKLFADTSY
DALSMDDIARQAHVAKGLIY
YYFKSKRGYYLAIIEDSVTG
LVTRAAEGLELPPDQRVHRT
IDGYLRYAEHNQAAYRAIIS
GGVGFDAEVQAIRDGVRQAM
VDAIAEGAYGRHEIAPLARM
GLLGWLCSVEGATLDWTGRP
ELPRDIMRKLLVKMLGGTLR
AIEELDPAYPAPPAARRDT
>_0077.000735_ NP_373138.1 gi|15925604|ref|NP_373138.1| putative regulatory protein [Staphylococcus aureus subsp. aureus Mu50]
MMTRSQNKQQQLEQAKDIVI
NSIGQTMDLYGTNRSVGNLY
GTMVFEGSMTLDEMRHQLQM
SKPSMSAGVKKLQEFDIVKQ
QFTRGSRKQHFIAEKDFFIF
FRNFFTKKFQREIDINVEAV
KDAQAIINPLLESSDLTEAE
TQEAQKIKAQLDHTHVYYEW
LEQLTEAIESGEIFKYFPIP
EQPSDSEN
>_0075.001861_ NP_689018.1 gi|22538167|ref|NP_689018.1| hypothetical protein SAG2032 [Streptococcus agalactiae 2603V/R]
MKRNKHLPLTETTYYILLAL
FEEAHGYAIMQKVEEMSGGD
VRIAAGTMYGAIENLLKQKW
IKSIPSDDRRRKVYIITETG
KEIVELETNRLRKLLNTANQ
LGFGGDSYDKV
>_0075.000186_ NP_687190.1 gi|22536339|ref|NP_687190.1| adc operon repressor AdcR [Streptococcus agalactiae 2603V/R]
MTVLEQKLDHLVSQILLKAE
NQHELLFGTCQSDVKLTNTQ
EHILMLLSQEQLTNSDLAKK
LNISQAAVTKAVKSLISQDM
LKANKDSKDARITYFELSEL
AKPIADEHTHHHDNTLGVYG
RLVNHFSKDEKVVLERFLDL
FSRELEG
>_0073.005654_ YP_299252.1 gi|73538885|ref|YP_299252.1| Peptidase U32 [Ralstonia eutropha JMP134]
MTISSSVRARHPQLVAPAGS
LTALRAALEHGADAVYLGLR
DATNARNFGGLNFTEADIRT
GVAEAHARDAEVLFAINTFP
QTGEVAKWQRAVDAAADLGA
DAVIMADAGLMAYASERHPQ
LRLHLSVQGSATHADAIELM
RERFNVKRVVLPRVLSLAQI
GKLARQTSVELEVFGFGSLC
VMAEGRCLLSSYATGDSPNN
KGVCSPAHAVRWTEQDGTMH
ARLSGILIDSYAPGEPAGYP
TLCKGRFEVQGERGYVLEEP
TSLNALSLLPALIDIGIAAI
KIEGRQRSPRYVADVVGVLR
AAIDAACAEPARFTPRQEWQ
GTLGRHAEGDQVTQGAYDRP
WR
>_0073.004948_ YP_297949.1 gi|73537582|ref|YP_297949.1| regulatory protein, MarR [Ralstonia eutropha JMP134]
MATKKQESPVTITPSDEVDV
ERLAHLVKDAARAYIRALQL
RLAQHSVSYGHWTILRILWR
HDGLSQRELSERAGVTEPTT
FSAVKALEALGYVERMHLPG
NNKKVHVFLSKAGRALRRKL
EPLAEEVNAISVEGVTEEDV
MTTRRVLISIAEKLVADEAA
LAESGRRVPSTQEVGRLLAD
L
>_0073.001918_ YP_297582.1 gi|73543062|ref|YP_297582.1| regulatory protein, TetR [Ralstonia eutropha JMP134]
MFCAAEPVSDANDIFGPLMP
VSSLSPHANPKNRRGLETRQ
RVLEVTRDLIRAHGYADVTL
DQISASAGVAKSSLLWHFGS
KEMLLAEAATSLFQQIAQEI
EPDVRAGETPQRRLDRVFNQ
VAQAFTANPEAKGVVLGMLF
SGSVPASVRAEIRRGWDSHV
RQLVDAFSQPHRPMPAAMAR
LMLATFHGCYCHWYAGGCSE
SVAEYLEPARELFRAWLGAD
AG
>_0070.000499_ PPEN_30JUL02_SCAFFOLD21_REVISED_GENE657 ppen_30jul02_Scaffold21_revised_gene657
MFFEVNSRQGVFNMENQIYI
IYISVAGNTQSFVDDLADYA
EKMHQNDTSNPLIISKEVTD
QTDFADETQPYFAFVPTYLD
GGNGIDNGVKELMTNTLGEY
IAYHDNRKFCLGVIGSGNRN
FNEQYCLTARRYAQDYGFEM
IDDYELRGNSSDCKRIYDNM
ANRVKNNI
>_0070.000250_ PPEN_30JUL02_SCAFFOLD15_REVISED_GENE373 ppen_30jul02_Scaffold15_revised_gene373
MKITIGNILKQTRQSQGLTQ
KAVADGICSQAMLSSLEHNK
YIPNAQLIIALCQRLSISLE
QLNLAENYAISNDKKLNQKL
NFLCNQHQYQLLFELLHQDS
TLNSLTTPSQIQSYYYYLAI
SEFQLKLDVTHAVQHLKLAL
ASESSKQSVLRRLCLGTLGL
ILNLHTSSSGDVYLQQSLKN
LQDNIYHPNLNILFYLQAFN
AYHQQNFLECTHTIENGLSF
ITNHDSHYMLANLYYLLAKV
ASKTNNLNLQNEATQRSKIF
TELFNERPYQDFKI
>_0067.001781_ NP_142735.2 gi|33359332|ref|NP_142735.2| hypothetical protein PH0799 [Pyrococcus horikoshii]
MTVVKMSKERMVELLQEHFE
LNLYEARAYVALVAFGVLTP
AELASVSEVPAPRTYDVLRS
LEKKGFAMNQPGKTNKYRPV
HPANVLEKFIQDWQERVKEE
LEAKKKAKEELLELMAPLIE
TEVPKYGVERVWVVRGIKNS
TLKTKEMLEEVQREILLADD
GFIAINLEDDIIKAVDRGVK
TRIILTKNLLARIKTSKIVQ
YAKEGKLELKVLDKFDLPML
VCDEEVFFALEDLAARYFNY
ETQVWIKDHRVVDLFKKRFE
EYWEKAENA
>_0064.000045_ YP_264178.1 gi|71065451|ref|YP_264178.1| possible  transcriptional regulator, TetR family [Psychrobacter arcticus 273-4]
MSRQHQFKVREENILAMAEQ
LLLESGDGNITLDSLADQLD
LAKGTLYKHFSSKDELYLRI
IIRYEEQLFEINRIDDCPSA
GVARMIFQQLFNPQKAMLLN
QIEERLAASVTGLNRLFGEL
YDIRRQRMKRLIDIISAYLK
DEHSSLSTRDYLSSIWAMGQ
GGAGLLNSSFYQRYLGRRDT
LRYAFVQQMLELPSHYPAVD
DEVMDEDMQELVEQIDTESE
EHRNTNY
>_0062.001707_ OOEN_16SEP02_SCAFFOLD8_REVISED_GENE2088 ooen_16sep02_Scaffold8_revised_gene2088
MNDKQYQEIASLLERLSRNN
AMSIYGDWIKNSFSKELIAS
ISVLTHNDLKILDSLFKQDL
SISDVVSRTGLSQGGVSRRV
NMMSEKGIIHKYQNDKNKKT
VFLKLNPIGQELFDFHRKLH
DHIKEIFFQKTQRFNEEQIR
VVISFLEAILT
>_0062.000951_ OOEN_16SEP02_SCAFFOLD33_REVISED_GENE1297 ooen_16sep02_Scaffold33_revised_gene1297
MKYKILLKGKQYFATINLFD
GRIAMDVQVQFMAELSQLID
KLSFLSRDQLKIALKGYKPA
EVHTIEFIGEHSETNVTAIA
SALYVTRGAVSKITKRLISR
GLIVRYQKPDNQKEVYFKLT
AQGQEVFEIHKKFTNYFMQR
DEPIFRDSPDAVATTLAFLH
QYNAFLDQKLTIKK
>_0061.007109_ NPUN_22DEC03_PLASMIDB_REVISED_GENEPNPBR124 npun_22dec03_plasmidB_revised_genepNPBR124
MELVLVKLGGSLITDKDKPY
TARREVITQLVEQVSLIKRE
NPNLKLIIGNGAGSFAHQSA
NKYNTINGFSGDEEKLGFCL
VHQDALDLNFLLAKSFLQVG
LPVVSLPPISMIITHNKKLL
KSDFSGIESSLQAGLIPLVF
GDVVLDQAIGGTVFSTDAML
AELAKYFYLQGKFKVRLINV
GNYAGVYDRAKVLNVKKNPI
KTAQNMLNFGRKIKVYLFNS
DYKFISQDCQRYLERTAKKR
LSSIEQSSVL
>_0061.003435_ NPUN_22DEC03_CONTIG1_REVISED_GENENPR0442 npun_22dec03_Contig1_revised_geneNpR0442
MMMVGKLELMNPPTIEHFLI
VDSLDTAFKAEIKRCSSPWL
CFRESGVRTGRNKSRLTDLC
VVTVEQARELLNASAVFQSP
PLLIVEVVSPESVKRDYRHK
RSEYAALEVPEYWIVDPLKA
KVSVLLLEDGFYEETVFTGT
>_0061.003313_ NPUN_22DEC03_CONTIG1_REVISED_GENENPR0153 npun_22dec03_Contig1_revised_geneNpR0153
MRSIGCLMHWLFTGHLRVDK
ITVKIAELPASLQGTTLVQL
SDFHYDGLRLSEEMLEKAIA
LTNEAEPDLILLTGDYVTDD
PTPIHQLVHRLKHLQSRCGI
YAVLGNHDIYYSHSKAEVTQ
ALTSIGVHVLWNEIAYPLGK
ELPFVGLADYWSREFYPAPV
MNQLDSVIPRIVLSHNPDTA
KILQQWRVDLQLSGHTHGGH
IVIPGIGPLVFHYKKLLKKI
PKKLRCWVTFLLGDCSKVVR
YWEWAQGFHKVQENQLYVNR
GLGTYKPGRLFCPPEVTVIT
LVSH
>_0061.002968_ NPUN_22DEC03_CONTIG1_REVISED_GENENPF6064 npun_22dec03_Contig1_revised_geneNpF6064
MAELCKNYATQSMYEAGKSS
SRVPKIKPRNNNGGIIIRFQ
YQGKQYTLSPGGRHDDKLAI
ANAERVASQIKTDILAGYFD
YTLEKYQPRVKQADNVVSIN
QQIVFNLKDLWEQYKVAKQA
RLAETTKKSIWRDVDRMLGK
LMANDLLPENACLLVGRLLG
FYSASTLERLLIEIEACSNW
AFENHLTHTHIWRRLRKQLP
ERPKSERSKKAYSRKEVDYI
IQAFGGDWYCNLNSAFKDSY
YADFIEFLYLTGCRPEDAIA
LTWDCVKDNVIVFDKAYSKG
ILKSTKNNKARLFPITPQIR
QLLDRRAIYVSTLLNKLVFP
SQKGNRINLKDFTQRYTKRI
IENLVSEGKVKQYLPTYNLR
NTSITHYLRQGVDIATVAAL
METSEEMINQHYWSPDEDII
NNNVQLPEI
>_0060.002608_ NMUL_10JAN05_CONTIG15_REVISED_GENE2609 nmul_10jan05_Contig15_revised_gene2609
MDPALDHLYEAAIIETIRRF
EATGSPVITDGEQRKYHNFW
TYCVDGLENTTPEGFIIPFS
AGHSRRMPMLKEGPFRYRIY
ADYYLETAMRYTNLPVKQAV
ISPSALSLMYPPHEIEGYSR
DQFIEDLLNEHETEVRRCLH
KGAHKVQIDFTEGRLALKID
PTGRLLDSFIDLNNMALSRF
NSDELSRIGVHTCPGGDRDS
THSADIDYSQLLPKLFQLKA
KNFYIAFSGEKDRLRILNMI
RAHLKPDQKVFIGVTSPINP
EVERPEHICDLILEAAEFIP
VEQLGTTDDCGFSPFCDDIS
TTRETAFAKIAARVQGTALA
SSILSGIAQSCTS
>_0060.002136_ NMUL_10JAN05_CONTIG15_REVISED_GENE2137 nmul_10jan05_Contig15_revised_gene2137
MSTSWRIRIMLTIHAKLVEA
MLAQAHKDHPFEICGVIAGP
EKSNLPLRLIPMRNAAQSET
FFKFDPQEQLQVWREMEARG
EEPIVIYHSHTHTPAYPSRT
DVQYASQPQSHYVIVPTDPA
YGEEIRSFRILDGMVTEERI
RMINSYKAEWELSMEAMVA
>_0058.001544_ YP_209085.1 gi|59802373|ref|YP_209085.1| lipooligosaccharide glycosyl transferase G [Neisseria gonorrhoeae FA 1090]
MKLKIDIATNNFKHGGGTER
YTLDLVKGLNRQNITPAVYA
TKFDHGIPEYAMIEPHLVDQ
RRTLKKLRSFLFSSRLAQTR
KNSAAKLIACHHADYADLLI
CGGTHLGYLHHMAQKPNLLD
RLAIRRNRSNYATAKLIVAH
SHMMRRELVGLYGVPPERIQ
VAPPPADTERFFPQPRETAA
LRAKYGFADHETVFLFPSTG
HTRKGLELLADFFEQTELPV
KLAVAGSPLPRPMKNVVGLG
FCTDMPELYRAADFTIMASL
YEPFGLVGVESALCGTRVVL
SENMACTEVMNEEAGFFFSR
QNPETLAQAVAQAVSLKKQG
GHRLSDPMRALNYNPSLSHH
IDRLTDMLASV
>_0054.000289_ NP_988584.1 gi|45359027|ref|NP_988584.1| hypothetical protein MMP1464 [Methanococcus maripaludis S2]
MIDMVSKILKKYFDNLDINF
ELDSQYISNKIEINPEICIL
CNRCLEVCPVTAISSNFPEV
PDIDNKCVYCNTCVETCPVD
AIKITKTRVRVENGNLIIEN
RLKSKKLDYNRKKCVMCLVC
TKNCPFEAISESDDTISFNM
DKCVLCGHCEEICPAKAIKL
E
>_0053.000315_ MMAG_12JAN01_CONTIG3650_REVISED_GENE321 mmag_12jan01_Contig3650_revised_gene321
MTEYYDSLETRSLDEREADH
FEALPAQIALAKADSSAFAR
LLADIDPEEVVDRAALAKLP
VTRKSELIDAQQADPPFASL
IATPKSELRRVFASPGPIYD
PEGWDNDWWRIARALYAAGF
RRGDLMHNCFSYHFTPGGVM
FETGAHALGCPVFPAGVGNT
DQQAKAIADLKPQGYGGTPS
FLKIILERAEEMGLDHSSLT
KACVSGEALLPPLRQSLKDL
GVDVTQCYAT-DLGLI-YET
KAREGLIVDEGVIRRDRASG
TGDPVPEAKSAKSRHQLQQD
YR
>_0052.006176_ NP_102513.1 gi|13470944|ref|NP_102513.1| probable transcriptional regulator [Mesorhizobium loti]
MTDHSSRPSPPPHIPIDALS
EILQDFRLSGVNYGRCELRH
PWSIEFPQQSLLRFHFVGQG
PCWIHTEAEGWQELRDGDLA
LLPQGIAHRLASAPDVAGGS
LDDCRVTKLGSNVCEVVREG
TGATSTLFCGSMALGACALN
PLITLMPPIIKGCDVAGNDP
VVGPLLTAMTVEAAQPQMGS
ATILSRMADLLTARLIRCWV
NCTGASTTGWLAAIRDPHIG
RALAAMHRDPGHNWTLESLA
SLAGQSRSIFAERFSAVLGE
GAARYLARLRMQLARELLGQ
NGLSVAEVAARLGYDSEASF
ARAFKRITNVSPGVVRRTIP
GRMDMNFGL
>_0052.002364_ NP_107178.1 gi|13475611|ref|NP_107178.1| transcriptional regulator [Mesorhizobium loti]
MANAAPAGWNAHAILEPPAN
PAAEPTLVVPEQTPIPCFEF
STGDLPPKDQFAAWRQSFAT
MLDFVEPGDTEAGFAGTQVI
WDLGDLALAQVSTNGLDFTS
LAGHVRRDPVDHWLVTLIQD
GRSQTITPSKSFDGDAGSVQ
VHPLGRVFEGSVTDSEMLLL
FVPRDFCRDMSWGLAAAEFS
VLRGGMGPLLADYLASLVQR
LPTMGVNDLPGLLSATRAML
QVCIAPSPDHLTEAHDPISA
TLLERARRFVQHHLFQPDLS
IEQMTRELGISRSRLYRLFE
ASGGIVHYIQHRRLLAAHAA
LADPNDRRRILDIADEYGFG
DGAEFSRAFRREFGYCPSEV
RTGVKNGPSHWHMDEVETAA
PGLRLGQLLRRLQAQ
>_0052.001932_ NP_106458.1 gi|13474888|ref|NP_106458.1| ferredoxin 2[4Fe-4S] III, fdxB [Mesorhizobium loti]
MTGAFVTRDGSPWTPHYLTA
IDGATCIGCGRCFKVCSREV
MHLHGVDDAGEILGICAGED
DDFDGEPNRMVMIVDHAGRC
IGCGACGRVCPKNCQTHLAA
DQLAA
>_0051.001546_ NP_247712.1 gi|15668908|ref|NP_247712.1| coenzyme F420-reducing hydrogenase, alpha subunit [Methanococcus jannaschii]
MKIRGFESSMMGKDIDFIPP
AMTRLCCLNEISHALAGVMA
VEKAYNITVPNEGQYLREIA
RLGEIVEVDAIKLREFKNTD
DLADIGNKIKSVLGKKAKYL
AVGGVLENISDKRKEKLINL
AKEGLNLVDKDFVKLVDERK
AKIPLPDVELIDAYNFDANK
VETNGLPKTALYDGKVVYSG
SLARMYKEGLINSKNLWDVL
SSRMIEIEFCLNKIIELLNK
LKLTHPYMEPIIKDGKAIGE
AVIEGGEGIVYHKVELLGRE
ILDYTILTSENFNKAVLDSV
DNDEAKRIIQLCERCYYL
>_0051.000428_ NP_247228.1 gi|15669880|ref|NP_247228.1| conserved hypothetical protein [Methanococcus jannaschii]
MYPKRIDIIKKIVENVGEKE
IIVSNIGIPSKELYYVKDRE
RNFYMLGSMGLASSIGLGLA
LNCEDKVIVIDGDGSILMNL
GSLSTIGYMNPKNYILVIID
NSAYGSTGNQKTHTGKNTNL
EEIAKGCGLDTITTESLEEF
EKEFKNALNEEKCKVIIAKT
IPYNEKCSNIEIPPVVLKYR
FMEAIKRS
>_0050.002021_ MFLA_01DEC03_CONTIG130_REVISED_GENE2245 mfla_01dec03_Contig130_revised_gene2245
LSIIIGTFRILPMALPSFSY
LQCSFAGMDFILRIETALLS
PAILSGNRILETMPAPAFCQ
AVPAPYFEAIEGNKLYKLAY
YLENLASLPPAKRIWSYGSA
QSNAMLALSALAQLMGTEFH
YVLPYLADALKTQPKGNLAL
ALDRGMQLHIDSKLYRRMTQ
QAFVPGEHEWIFAEGANHAH
VAHGFGYLGAEISEIAGTLG
FKQVFLPSGTGSSACHLAAS
LSGMEVMTTPVYGDTPYLQQ
VFSAMQPQHHPVILTHEPHY
RFGSLYRELWELQAELVAET
GISFDLLYDLPAWACILQHR
ERFKQPWLYLHQGGMKGSAT
MRERYVRMFGSERPSKAGAR
SEIQGKAEVD
>_0049.002700_ NP_786695.1 gi|28379803|ref|NP_786695.1| aldose 1-epimerase [Lactobacillus plantarum WCFS1]
MILETKKTVFDQLDGQDVMR
YTLVNDHQTRISVLSYGGTW
QEFVVNEDGVEHPLIWGLDN
MTDYQRVGYCLCQSIGRVAG
RIGGAKFKIDDQSYQVDMNE
QTHSLHGGNHGFNTLNFEGA
FSQTNDSVSVTLKKHINASD
DNYPGNMDVAIKFTLDNQDQ
VSIAFTGDTDAATLFNPTNH
VYWNTTDDRTSLAQQKLQIT
SAAHLEFDDEKVPTGKKLAV
KGTAYDFNQAQPVEKALDQL
KTENGGIEFDDAYEVAPSAA
EPIAIVGDTDDKRQVKIYSD
RNSLIIFTANPFDADKEDAH
QYNALATEAQTLPDAINHPD
FGDIVLRPGAPVTHTIRYQY
ERLN
>_0049.002246_ NP_786059.1 gi|28379167|ref|NP_786059.1| glycosyltransferase (putative) [Lactobacillus plantarum WCFS1]
MNRVYVERSDWLFNRQSTML
MKILITVENLVMDGVKRAAT
VLGNALTSQAEVAFYSLAQP
RSFYELSAPLITARRPASAT
VLNYFGADPLTVYAPQIDDL
LTTIGSGAYDAVILPGGLLT
SFAPAIKQRFPRVNVIAWMH
NNVDIYLNQYYVQMQDELVA
GLLAADTVVTLTDYDWEGYS
RFNAHTVKFYNPPTMQAHGQ
QADLAQHIIAYTGRIDLQHK
GLDYLLTVARALPDDWQIAV
AGTGPEDQLATFNRLMAELD
VRDRIIYRGALKDTELRAHY
QQASVFMMTSRWEGMPLVMG
EAMTMGLPIVSMWNTGSAEY
LQGGQYGVLTPARDVNALIT
GLMPLLTDFDCRAEYAARAR
QRSHDFTLSKIVRQWLALLN
RQYVPQTVVESNWPADLSSG
GH
>_0045.001322_ LBUL_20SEP02_SCAFFOLD7_REVISED_GENE1825 lbul_20sep02_Scaffold7_revised_gene1825
MAQSKGTDVVIQLLNQALKA
GSTAKYVMFDTWFSNPHQIV
QIRQRGLNVIAMVKKSSKIT
YEFEGKRMNVKQIFNACKKR
RGRSRCLLSVPVKVGDPAKD
GAQIDARIVCVRNRSNRKDW
IALICTDMTIDENEIIRIYG
KRWDIEVFFKTCKSFLKLGT
EYHGLSYDALTAHTAFVFLC
YMFMSVEKRDDEDDRTIGEL
FYCMVDELADITFNHSLQIL
VEAMFESVKEIFQPTEEQME
RFTNAFISRLPKYMQEAISP
SLAA
>_0045.001230_ LBUL_20SEP02_SCAFFOLD6_REVISED_GENE1679 lbul_20sep02_Scaffold6_revised_gene1679
VITEKAPGKLYIAGEYAVLE
QDCPAILVALDQYVRVSIKP
SSSDTGLIHSKQYSQDSIHW
VRRGSKIVIDNRDNPFEYIL
SAISFTERYCLEQKVKMDVY
DLFVNSDLDSADGKKYGLGS
SAAVTVATVKAILRFYGVQA
SKDLIYKLSTISHYSVQGNG
SAGDIAASVYGGWIAYQTFN
KLWLKEELASKSLSAVVGEA
WPGLKIQPLVPPKGMELLIG
WSQQPASTSRLVDKTNANKN
NLRTEYAKFLADSRKCVLQM
IRGFEEANIALIQKQIGINR
RLLQHFAAINNIAIEIPRLT
ELIEIANKFGGAAKTSGAGN
GDCGIVIVNKDTDIDRLRKE
WVKNDILPLEFHIHQSELTY
>_0044.001886_ LCAS_20SEP02_SCAFFOLD5_REVISED_GENE3163 lcas_20sep02_Scaffold5_revised_gene3163
LTTKHQILHREIVLDAARTM
VAQDGIRDLTFQTLAKELNI
CSQSLYNYFPNLPAVIEALG
TEFMHNLYQELIENVSGISG
KEAIRAFAEVAHRYFERQQS
LDEIIYFVHQFPESSPFVQG
TGDVINLLKRLIVHTELKQM
AKESFVQDFISSVLGFTVLE
VMGFLPDNKASRDTSFESLL
DMYLNEIKE
>_0043.003043_ JANN_22DEC04_CONTIG27_REVISED_GENE3044 jann_22dec04_Contig27_revised_gene3044
MGNTKPPDGAPVAVLPCVCR
MGLGHQIDTKSQYGVAMKIL
FVHQNFPGQYRELFSWLRAQ
AGHELVFLTQRKDMPAIDGA
RVITYTPHHKPAKDAYALTQ
YWEECAGNGFGCAQAAGKLR
GEGFRPDIILGHVGWGELTF
LKEIWPNTPIIGYFEYYFLA
QGGSVGFDPEFPASPHAPFT
MHARNAVNFANIQTVDQGHS
PTAWQRDTFPDSFKQKIYVK
HDGIRTDQLRPDPTAEVALG
RLGRAVTKEDEIFTYMARNM
EPTRGFHSFMRALPHILDAR
PNARALIIGGSDVSYGKKSG
SEGGYRAEMEREVGDAVDWS
RVHFLGRVPYGDYQKIIQVS
RCHIYLTVPFVLSWSCLEAM
SMGATIVASDVAPVREVIEH
GKTGLLADFFDPKDIARNVV
DVLERPGTYSHLGPAARNHV
VQHYDFQTICLPEHLRQINA
LVPPAKRIPLPA
>_0037.000889_ NP_953468.1 gi|39997517|ref|NP_953468.1| hydrogenase maturation protease [Geobacter sulfurreducens PCA]
MVVCVGNDLVADDAVGYEIH
RRLAGAPLPAGVRLHYAAVG
GIALLDYLTGGEAAMIVVDA
VQFGAPAGTIHQLAWDELPN
FGGGSISAHSIGLKETMDIG
KLLYPERLPPTVTLVGIEGR
CFDRTRDAMSPEVASAIEPA
VALIRNYLHTLGQGI
>_0037.000458_ NP_952558.1 gi|39996607|ref|NP_952558.1| heptosyltransferase family protein, putative [Geobacter sulfurreducens PCA]
MLCKMRREGRRVIVITLLEH
LGDIVACEPVARYVRSQEPN
SFLIWFVSPTYREIVETYAS
LDRVRTINCITSWSRLRRSV
RFDRVVDLHIDGRVCPTCRI
PHGNFDGDRSINLSNYFYYG
SLLGSFCKAAGLPALDDQPV
LHLPKRVKGCVASLRLAEQY
LVIHCNSNELCKDWSSQKWN
KLLDRLALDDIKVIEVGLQS
DLGRSQSEHYIDLCGKLSLL
ETAEVIRGSKLFVGIDSGPA
HIANAVGTYGIILLGQYRAF
NCYQPYSGAFADGSMASVIY
SKSHVRDISVNTVYQEISRV
LTLSATLSAVASNNKSRANA
>_0036.000378_ EXIG_01APR05_CONTIG262_REVISED_GENE379 exig_01apr05_Contig262_revised_gene379
MAYNEQDHLLVIFPHPDDEA
FSSAGTIIEHAENRGPVTYA
CLTLGEMGRNMGRPVFTNRE
ELATIRKRELIAASEKMKIS
DLQMWGLRDKTVEFEDEAML
AERIGELIAKTQPTRVISFY
PGYAVHPDHEATARAVVRAL
RAMDENERPEFLAVAFANNT
RDELGEGTFVHDVSAYTDQK
IAALQAHASQTGGLMKVISE
DSNIRDLLVKERYYHYPL
>_0035.001539_ NP_815090.1 gi|29375936|ref|NP_815090.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583]
MTLISRIKQLAQSKQLTLAQ
LERNVGISNGQIRRWDTSSP
KVENLLKIADYFSVSLDYLM
GRTQQTEINHQAPMKSTQKE
LHIHITTEELTEEEITQLEE
EANRFLRFRKFEMTNS
>_0032.001888_ YP_010559.1 gi|46579751|ref|YP_010559.1| transcriptional regulator, Fur family [Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough]
MNAREQLDAHGVEATPRRLA
VLEGLAAFPHAPTAPELLEE
VRKTVHLDKVTLYRTLDLLV
EAGIVGRHPGGDGLLRYCLV
HEETRPFHAHFYCTRCRRMS
CLPATSTIPPRPEGLAEGMT
AERVEVRFDGICNHCGDAPS
SGSDSQSGSTTPARRPDTHG
APRP
>_0030.001035_ DHAF_12NOV03_CONTIG1049_REVISED_GENE1185 dhaf_12nov03_Contig1049_revised_gene1185
MSKDNAQYGILIDYEYCTNC
HTCEVACKKELGLPVGQFGI
KVLEDGPRENVYGKWSWTYL
PLPTELCNLCEDRVKEGRLP
TCVHHCQSGIMYYGTLEELS
KKLVEKPNMVLFSR
>_0028.001557_ DDES_06JUN05_CONTIG143_REVISED_GENEDDE1562 ddes_06jun05_Contig143_revised_geneDde1562
MIEGKGAPALKKILLLAAFL
GVWQACCLPSAAQSAAAVFV
VEPAHRVVTLTGFTRPRTRL
ALVSEVPARCTQVYADVGDP
IGEKGVFATLDTTFIRLELQ
ANRADQQRLKSDVAYFDKET
SRYRNLVGGKHAAQSQLDGI
VRDLVTARQQLERLRIDEMT
LAERLRRHTISAPSGWRVIE
RSVEPGEWVTQGQKLAVIGD
FDTLLVPLALSVREFEALKA
MERIELTLPDSGTRISAVVE
RVSPDFDPATRKINVDLQVT
GETGVLRGGIRTELALRMPD
EGGAVAVPQSALTRAYEDWF
LVRPDGERVRVLVLGPGEQA
GTMRVRSAQVHAGDVFLVTP
EAG
>_0028.000736_ DDES_06JUN05_CONTIG143_REVISED_GENEDDE0737 ddes_06jun05_Contig143_revised_geneDde0737
MSLYFCTPFKPPDHPRPSGD
VTIAQDLCAFMRQQGQHVET
VPYLPTDRIWRRPAMWPRLA
WRRAALGLSLCRRRPGAWFT
YHSYWRAPDLLGPAAAAHGV
PYFIFAGAHSPKRAHDRASR
WGHDKNLAALRAAAQIFVNK
HRDLPALRSVLPESRLSFIA
PGIRPDDFAFDRSSREELRR
QWRVSTASVVLSVAMLRKGV
KTEGIKQVISACARLRARGE
DIILVVAGDGPEKEALERLA
GYELAGNARFTGFVPREALY
KYYSAADLFAFPGINEGLGM
VYLEAQAAGLPVVAWDHDGA
PELVKTGTTGIITPAWDTAA
FAHAIGWLATDGRMRRTLGD
NARNHVRAQHNLHTNYSRML
DIMNTLCGETRPDGTCTHPD
FK
>_0019.000007_ NP_149271.1 gi|15004811|ref|NP_149271.1| Predicted HTH containing transcriptional regulator [Clostridium acetobutylicum]
MVVIKLSSINLIILGYLQHK
EKSAYEMVKDFDKWNLTKWL
KISNPSIYKNIIKLCDNGYL
NSRIVKEGEMPEKTLYSMNE
KGNAYFNELMEESSKNIGNV
YLEFNAFLVNIENLPKEKRR
EYLENFKNKAEERSAFVESV
YNYEKQHTEKPGSEFLIMDL
YNEFYHILQKWSEKVFDHYN
>_0018.002129_ BFUN_06OCT04_CONTIG481_REVISED_GENE2130 bfun_06oct04_Contig481_revised_gene2130
MPGFSITFQVMDRQRGLAII
VGMNTLSLAQSVPPHMPAAS
RTVGDLLREWRQRRRMSQLL
LAAEADISTRHLSFVESGRA
VPSREMVMHLAERLDVPLRA
RNALLVAAGYAPLFRERQLS
DPQLAAAREAVELVLKGHEP
YPALAIDRHWTIIAANGALA
PLLDGASPELLKPPVNALRL
SLHPEGIAASIVNWHAWREH
ILARLQRQIDVSGDDTLSAL
HEELAAYPAPPGADAAEHDT
ATAAQIAVPLRLRTPIGVLS
FLSTTTVFGTPVDVTLSELA
IEAFFPADQQTTAALRESAG
NQRADAVRQP
>_0017.001180_ NP_812138.1 gi|29348635|ref|NP_812138.1| hypothetical protein BT3226 [Bacteroides thetaiotaomicron VPI-5482]
MKYFCVTEAVALYIQKYVQY
RKRKIFFGATGKIEDLVPSI
VKHKTEKYLVPMSDVHNDDV
KNLLDKNNIQHTEAVMYRTV
SNDFTSDEEFDYDMLVFFSP
AGVTSLKKNFPDFDQKEIRI
GTFGSTTAQAVRDAGLRLDL
EAPTVQAPSMTAALDMFIKE
NNK
>_0013.003299_ NP_878974.1 gi|33591330|ref|NP_878974.1| oxidoreductase [Bordetella pertussis]
MMQQEQRILFKNDVGDYAAV
AAGEESVLQAGLRQSVPLNY
HCASGSCGSCKARLIQGALK
VYTGTDFIQVSHSAGQACEC
PEVHLCQSHAVSDCVFEALY
DKNVPPDLAAPKHYAASLND
VRPLGSGLYRLLVDLDDSIR
FLPGQYVMLATKAGGRARAY
SVANFAQDSRQLEFILSCNP
NGAMSPQLCDINNIGMQLQG
YGPLGKAYIRPKKDNELVML
VGGSGVSVALSTLEWAISSH
YIDDRHLTIFWGVRDTSPID
LIGVFNRYAAVHSNLRVAVC
SDISPSVQDRGRFPYIEFFT
GYPADHIVNDASISWEGKEV
YISGPPPMVDHTIRQLMINT
EIDALDIECDSFV
>_0011.003091_ YP_105811.1 gi|53716990|ref|YP_105811.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344]
MSDIAVQEDAAVAASARPAS
RANPGGTARDAQTIDVVWCG
HARRAADADPRFAPRLGVAE
MLASARGTAECGRIATSLLR
LMGFATFAYFALEFTRDDAE
CLYLHEAFTPAAYRGDYVRR
RHHDVDPRMLGTRASSMPVV
WDLRQLAREHAARGCDALDG
FLRVMHDDDMCSGVMYSMPV
PGTRVHAFASFTAPRRSRDW
ISSATLEQVLSLGLSVHRFA
APQLIASARERAAERLTPFE
RELLVGIAEGASDKEIGRRL
DTSAHNVDYHLRKLRKRFGV
ANRIQLTYFASARGLI
>_0011.001188_ YP_102393.1 gi|53725253|ref|YP_102393.1| hypothetical protein BMA0605 [Burkholderia mallei ATCC 23344]
MQDLSTELAPELKPELKPEL
KLDDPFVDAVHTEFVQLLDA
AARADDAHFLQAYDVWMDHC
RQHFEREERWMASTKFGPQY
CHAADHNEVLKVAADVREKL
ARDAQFELGRRLLVEVAEWF
DQHVRTMDSMMVSHLKMLNF
AMVDVPTEA
>_0009.002559_ NP_243215.1 gi|15614912|ref|NP_243215.1| BH2349~unknown conserved protein in others [Bacillus halodurans]
MLLEDVLKEYEYHCQARNFT
KKTMTNKRQEYNQLKQFLET
KRGITELESIYHQDLKSYIR
SKQMSGLKPQSIHAIAKQIK
AFFNWCVSEEYLKENPMDKV
ALPKVPKEVLTGLTTDEVVK
MMDSFKGDSYLEIRNKAIIA
MMSDCGLRAMEIAGLKECNV
RDTDIKVFGKGNKERMVFIS
PALKKILLKYERAKKNYFKD
KIQYSDSYFLAYQGKAMSTS
TTL
>_0008.001153_ NP_978715.1 gi|42781468|ref|NP_978715.1| 4'-phosphopantetheinyl transferase, putative [Bacillus cereus ATCC 10987]
MIESKVVDSIPILNENDCQI
WWGRISDLQSWHYNLLNDVE
REKANSYHHSADRARFIIGC
VISRLVLGKMLSMSPVQVPI
NRMCPVCKLQHGRPQLPEGM
PQLSVSHSGEWVVVAFTKSA
PVGVDVEQMNPNVDVMKMAE
GVLTDIEIAQVMKLPNEQKI
EGFLTYWTRKEAVLKATGEG
LMIPPVDITISAPNDSPNLL
VFKDRQELVENTVMRDLRPS
VDYMASIAIFSKEVTEIIQL
DAVALLNYK
>_0006.004449_ NP_890852.1 gi|33603292|ref|NP_890852.1| putative dioxygenase [Bordetella bronchiseptica RB50]
MSTTNAASTEQPLKFAGYRK
RDMPAHDAELTSTMPGTPMG
EYMRQYWQPVCLSEELRDVP
KAIRILGENLVAFRDKSGNI
GVMHRHCAHRGASLEFGVIQ
QHGIRCCYHGWHYGVDGTLL
EAPCEHDDTRLRQTVCQGAY
PAFERDGLVFAYMGPPENQP
PFPEYDTYTLPKGTKLVPFS
NVYPCNWLQVHENIMDHMHT
AVLHNHMVVEGVDAEVSAGV
TLEGFGDMPVMQWHPTRSGN
GIVFVAGRRLPQDRVWVRIT
EMNLPNYLQIGSLVPTAARE
RHSTSGCTRWHVPVDDTNMI
IFGWRHFNAEVDPDGMGCEA
DCGVDKIDFLVGQTGNRSYD
EAQRAPGDWEALTSQRPIAV
HALENPGASDVGVYMFRKLL
RDALHGKTKPDPAYAQLLAS
GQSLPLYAQDSVLYAKQRED
TAEDRKLINELGRKVLDIMR
AADGLAAAERDAFVRAELDR
IDDGVGKQIVAQALAMEA
>_0006.004161_ NP_890349.1 gi|33602789|ref|NP_890349.1| AraC-family regulatory protein [Bordetella bronchiseptica RB50]
MRSLYIDAALVRGMPDDCAV
LDMTALMRELVVRASTDAPS
TRDAPQRHEASDGALDEEYG
LLSALMVAELRRLPRCGLDL
PLPESAALRGLCERALADLS
AFDSAQAQARRLKLSARTLY
RRFLDETGLSFARWIQQARL
LDAVRRLGDGQAVTDVALDL
GYQSPSAFTAMFNRALGCSP
REWRRLGEGRE
>_0005.004734_ YP_324071.1 gi|75909775|ref|YP_324071.1| LmbE-like protein [Anabaena variabilis ATCC 29413]
MEPKLSHKIYLKELGKLIPI
VWLEKVQYIHSWLLLKWLLF
CNSKPLLSNQKSAMIFSPHQ
DDETFGCGGMIAYKREHGIP
VVVVFITDGKGSRSLDLDCQ
NQIVQTRKQEAISALGILGV
ESSHIHFLSKPDGCLPELSN
EEHQQTIREISELIQHYQPE
EIYVPHRKDCHRDHEATYNL
VKTVIREANIPVEVFQYPVW
LFWRAPLFILLKIQDIAAAY
RFSITSVQDKKKRAIASYSS
QIENLPRGFIKQFLNSHEIF
FKSEL
>_0005.003164_ YP_321162.1 gi|75906866|ref|YP_321162.1| Protein of unknown function DUF820 [Anabaena variabilis ATCC 29413]
MFTISDLEQLQAEHPEWQME
LVDGSILVMGPSDYISEEIG
VEFARQLANWVRPRKLGRVT
GSSAGFILPRLETENGIEAD
IEKRNLRAPDVSFVRAERLK
ISKRDFVELVPDLMVEIKSK
SDHIKPLEEKIQLFLQLGCT
VGILIDPDKLTLTVYRINQE
PVILQNNDKLTLPDLLPGWE
LTVSEIWPPVFE
>_0004.002311_ 17740837 gi|17740837|gb|AAL43343.1| transcriptional regulator, MarR family [Agrobacterium tumefaciens str. C58 (Dupont)] (gb|AE008688|:c2329523-2329017, Atu2354
MALRLAHSNGPRTEKSESGS
AEAAHNTAIDYGLLTTAISY
HLRHSQLAVANGFADVLAEQ
GLRPADFSVLVIVGGNPGLK
QSDVAEALGIQRANFVAIVD
SMEEKGLLVRRKSEEDRRVH
FLDMTEEGSSLLDRLSNTWR
DREEKLIDRIGGKKARDQLL
ALLGRLRD
>_0004.000482_ 17738843 gi|17738843|gb|AAL41514.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (Dupont)] (gb|AE008688|:482512-483240, Atu0495
MLSRLTLSDRFSNGFECLGS
ETAIHGVAAWCDPLGGLYLP
DLSLLVVSDLHLEKGAAFAR
RGRMLPPYDTIATLKILSSL
VSRYDPKIVVSLGDNFHDRV
GSQHLPLPLRELIREMARGR
EWIWINGNHDPDGTVDLPGS
SVDEMFYGNLVFRHEPKVGE
AAGEIAGHLHPSATVRRREK
TVRRPCFATDGSRLLMPAFG
VMSGGLDLRHQAMRGLFDHT
ALVAHLMGRDRIYSVRFSNL
LG
>_0003.004029_ ARTH_26JUL04_CONTIG47_REVISED_GENE4035 arth_26jul04_Contig47_revised_gene4035
MEFPAFPDSAHPITWPEGFR
AAASFTFDVDAESCTIAHDP
TSTRRMSLMTHQSYGPKVAV
PRLLQILQRQDIQATFFIPG
FTAESYPDVVRRIVDAGHEI
AHHGYLHEPMQGIDAATEAR
YIDRGLEALAKVAGVRPIGY
RAPWWELNWHSPALLADRGF
LYDSSLLDGDAPYRFSVGEG
DSRDLVEIPVDWALDDWEQY
AFYPGVTGSGVIESPAKVLE
MWTLEAEAHHAAGSCFVLTN
HPFISGRPSKAVALEQLISR
VKDMDGMWVTTMAGIAQHIR
DTVTEVHSHARIEVPGFPDA
GARFTPAQVRQPALAAEPAG
R
>_0003.001808_ ARTH_26JUL04_CONTIG41_REVISED_GENE1813 arth_26jul04_Contig41_revised_gene1813
MQIGVFSVSDITTDPTTGRT
PTEHERIKASVAIAKKVEEI
GMDVYAIGEHHNRPFFSSSP
TTTLAYIAAQTERIILSTAT
TLITTNDPVKIAEDFAMLQH
LADGRVDLVMGRGNTAPVYP
WFGKNIQDGIELAIENYSLL
RRLWDEDTVNWSGKHRTPLQ
NFTSTPRPLDGVAPFVWHGS
IRTPQIAEVAAYYGDGFFAN
NIFWPKEHYQQLIGLYRERY
EHYGHGKADQAIVGLGGQFF
MRKNSQDAVKEFRPYFDNAP
VYGHGPSLEDFTSQTPLTVG
SPQEVIEKTLTFREYFGDYQ
RQLFLIDHAGLPLKTVLEQL
DLFGEEVLPVLRREYAALTP
AHVPEPPTHAGRVAARMAAQ
VQEDSLTKPTAQDA
>_0002.000879_ NP_148058.1 gi|14601518|ref|NP_148058.1| 3-phosphonopyruvate decarboxylase [Aeropyrum pernix]
MSLLTLAFNPQPRAKTYCSG
PILRVSGVWAVKILYIVLDG
AADSPTSPRKTLEEASKPNI
DSLGSHAVCGMVYTVKPGVA
PQSDYATLSLLGYNPDEYYP
GRGPLEAFGAGIEMRRGDIA
LRANFATVDPGTLRIIDRRV
GRSLTSREARELASAVDGME
LEDGEGTALFRATIGHRGVL
VLRHRSKPLSDAISNTDPAY
ERRGRFSVALEKYEPFIKLS
NPLVEDEAAVLAARMLNEFT
LKAVEILDSHPVNLAREKRG
LLKANAILSRDAGGLPEEKP
PSFQERFGLRGASIVEMVVE
RGISRYIGLDDIRVEIEGRA
REEVYREEAARAVEALETHD
LVYVHLKGPDEPGHDGSFEG
KIRAVEDIDKHFFAPLLDRL
SSAGLEPAFVVTSDHATPWD
VGAHSGDPVPLMISHQSIQG
SIGKFSETVCLRGRLGTIIG
GYRIIPKTLSLLAG
>_0001.001556_ NP_070625.1 gi|11499386|ref|NP_070625.1| phosphate regulatory protein, putative [Archaeoglobus fulgidus DSM 4304]
MLENRKVYFSGKSSYILTLP
KRWAMENGIEPGSEVVLSVG
KNFITIYPKNPGLKIKRVEI
DAKDVKHEALLRRIISYYLA
GVDSLRIRVYDEEQRAAISR
ASESLMGVEIVEDTGKEVIL
EIFLDNSRLKPEGIIRRMGN
TCVGMVSDFCTALRKYDRYL
CSSIIFREREVDRLYFLLLR
QLKQATLHADVAAQLDIPIE
TIQEYRTVVRTLERVADHAA
NMAESLIELGKPVDYLCDFV
EIDLEMLRTAMVAFIENELE
LAEVVLEEFDDIQDIERKYY
SSILNEDVEEALNLKSIVDS
LSRIAGYSADIAEVVVNMVV
V
>_0000.002643_ ADEH_23AUG04_CONTIG87_REVISED_GENE2646 adeh_23aug04_Contig87_revised_gene2646
MAEGEARMLLRVIDYVANPG
GGVRFTVEMLRGLHRMYGPQ
IELVSHGEALQRYASLLSRD
RGVRLVDVPPVEAWRSRTLM
AGIPGAGPLNLLLGTARFHH
AVAGDLLEGADVVWFPWLHR
HRIPWARAGRVVATLHDVIT
LQFPEIAPAWIRRDERGTVR
AWLASGARIAITSNATAATL
HSMFGTDAERLEVIPLSGSH
ERPAAPVTRGDLAFKGREYL
LAPINITPHKNAEVLLRALG
RTGARHPLVLTGSGMDLWPP
RSTRARKLTELAEASGFVRD
ASLFAPGYVDDRAYEQLLDE
AWALVMPTLAEGGGSFPVLE
AMTAGIPVIASDIPVMREMV
ERTGGQVLWFDPRDPADLAA
KLAELEARYPEYRGRAERQA
KTLRLRTWDDVAAGYARLLG
LT
>_0000.000262_ ADEH_23AUG04_CONTIG40_REVISED_GENE264 adeh_23aug04_Contig40_revised_gene264
MDGSVATRRIGPPRAGIAER
IWDAARAEFSKRGYHGARVQ
GIARGASCNVALIYRHWASK
RALYLDILRAVWLSAANELS
RFVENGSGGPEAVIAAYLDA
MMHDAMGAQILVREYLDGAP
YLSQLTTAEPALLDPLRRAA
AVIAEGTDGGVDPVLAVVTV
GGLAALVASSREAMLPMVGQ
QLAPEAWRAHVLHVLANGLA
PRAGGPRG
>_0118.002204_ NP_266594.1 gi|15672420|ref|NP_266594.1| prophage pi1 protein 03 [Lactococcus lactis subsp. lactis Il1403]
MKKIRLPEMIDYFRKENGWT
MKEFGEKLGKSESAISKWIK
GVRSPMVEDFDKMVNLFNTD
PDTLMYGASDLSTTLSEINK
ISSQLEEPRQKVVLNTATNQ
LDEQNQEKKKESKVIPINKI
PDDLPPYISRKILENFVMPT
NTMEYEPDEDMVDVPILGRI
AAGLPLDAVENFDGTRPVPA
HFLSSARDYYWLMVDGHSME
PKIPFGSYVLIEAVPDVTDG
TIGAVLFQDDCQATLKKVYH
EIDCLRLVSINKEFKDQFAT
QDNPAAVIGQAVKVEIDL
>_0116.001589_ YP_194668.1 gi|58338083|ref|YP_194668.1| transcriptional regulator [Lactobacillus acidophilus NCFM]
MARRKEFSKDKILDTAYKMA
IKDGIEGLTARSIAKAGHFS
TQPLYLEFDNMDDLRAQVLE
RISADLRNHTLQQEFTGEPL
IDLDLSYIEFAKTHVNLFRA
MFADGKFGSKVIADTLLGLG
TEKFKEQYPDTNYDEDKIRN
IVIANWISTTGMAALVVNKI
ASFSQNQIINVLNAQIHDAM
LNDHLSETQENPMFAADEEA
SLKDNLA
>_0113.002083_ YP_001088182.1 gi|126699285|ref|YP_001088182.1| putative flavodoxin [Clostridium difficile 630]
MNTIIIYSSKYGCTKDCANI
LKNKLSDNVTFVDINNNNNN
KIELSKFDKIIIGSSIYVGS
VSKKIQVLCNDNVELLNKKQ
VGIFLCCGFSEQADKYLKSN
FPSSLLESANAIGIFGSEAR
LEKMKFLDKLIMKAVSKGNY
DSFRISQDNIDNFLINLNS
>_0112.000789_ YP_909581.1 gi|119025736|ref|YP_909581.1| hypothetical protein BAD_0718 [Bifidobacterium adolescentis ATCC 15703]
MTDALFLLDTDHDDVPVNSD
ELNAGWRLTLPSSVRRHAIQ
AMRLKDGDELQLSDGRGLRI
HAVLRDVQQGIAEVLRFGKE
PQPVTRLALVQALAKTGHDE
QAIDMATQIGVDQVIPWQAD
RSIAKWKAGRTDKKWRQVLE
SATEQSRRSWTPQLDDCVTS
KQVVAICKRACVHGDMVIVL
HQDATKTWEQLETGIAKLSD
TCLKDGRPRTIYVLVGPEGG
ISDAEVEAFTKAGAEVCVLG
SNILRASTAGPVALSLLARA
LGRFV
>_0111.002418_ YP_213855.1 gi|60683711|ref|YP_213855.1| putative glycosyltransferase [Bacteroides fragilis NCTC 9343]
MNILIQQTKAFPHRANSFYW
FYAQLTEWLTAHGVDSKLYF
SYLELADSEFENGLLLPDHY
SQFYTPRNIEAICRFIIDKQ
IDVILDYSHVITGDTRKYYL
EIKKRNPGIKICTMIHNCPS
HTTQLKQYELSTLRFKDVHG
PKKLFQWMLPQLYISLLKKV
VSHQNRSAYDTLDEVVLLSP
AYIPEFKKLIGKKDAWKLSA
IPNAIKPVHSNIPIEEKDKE
IIFVGRMATEKALPKLLKIW
GMVQDKLPDWKLTLVGDGPQ
FGTCRQIIAEKKLKRVCLTG
HQMSIPYIDRARILCLTSVI
EGLPTVFTEAMSLGVIPIGF
DSFNAIYDMIDDGIDGFIIP
DNNYEQYAETILRLAQNDTL
RCRIAYKAQKRKNRYDIEQV
GPLWMETFRKHGLIK
>_0110.000433_ YP_001298825.1 gi|150004081|ref|YP_001298825.1| hypothetical protein BVU_1516 [Bacteroides vulgatus ATCC 8482]
MIMTIVEGFDRIEKKLDRMG
RVKDFMNGDELLDNYDIARL
LNVSLRTVARYREKGLIRYY
QTDDNGKNFYRSSEIQEFLL
KRGKKK
>_0106.001700_ SWOL_07JAN05_CONTIG134_REVISED_GENE1701 swol_07jan05_Contig134_revised_gene1701
MSVSGINFVCAGRDELEIPR
EIVEQGGFHFPDLHSDSQEM
ARLALAIKHNKQNSICMLPF
CLTVEAEALGARVNLGNASS
GPRISSYSYESIEQLKDLRM
VDFNSGRIKSVLDAVETLTQ
SGEVVALNVSGPFTIITSLF
DPMVLYKAVKKNREGIDDVL
RIIEGIILRYILEAIKMGAR
IISYADAVGTADMVGPKIYK
DIAGIASLNLLKRLQTSDEL
DGCFVHICGKTSVSLENHGF
ARSYPIEVSSNQTYGQAITE
LLYKSQGSRFIGHNCMKRTV
NKLKDNTVWRIEF
>_0105.002007_ YP_054992.1 gi|50841765|ref|YP_054992.1| putative NADH dehydrogenase [Propionibacterium acnes KPA171202]
MRHPQRVFSSMRKIMFVIGS
MPLTHPSQSADGDPGKKYEV
TRLDLGHLHPTRSGLVTIAT
TVDDDVIISSQVNVGTLHRG
DEKLFEVRDYRQIPMLASRH
DWTAPFIGETGAAHAIEDAM
GITIPTRVAWIRTLLAEFSR
ITSHFTFLSWVGHHCDDAGL
ENAIATAIENARRIWQRCSG
NRIHPMITRIGGLRIHPESE
WQPALGEWLDDANALVTRLR
TALDATVGVRGVAVIPTNMI
DRYGLSGPVSRASGVDLDTR
RRTAVYDELKWPEVVIEPRG
DAYSRLATLCNDAAVSSSLC
RQILDRLPSLDGPLETRLPT
AIKAPRGRTWTTIEALWGRA
GYLLESRGSTTPWRMALRTP
TFANVQVLEAVLPGTRVDDV
EATIASLGWTLGDLDK
>_0105.001925_ YP_056916.1 gi|50843689|ref|YP_056916.1| putative MarR-family transcriptional regulator [Propionibacterium acnes KPA171202]
MCLSPLILSDKGGTVTEDSA
VWLDDHQQRVWRLWLEVSTT
LPAVLNRQLSRDSQLSVQDF
EVLVRLSETDGGDMRVVALA
EHMGWERSRLSHHLTRMEKR
GLIERRVCCSDGRGAIIHLT
DQGTAALQQAVPGHAALIRR
VVFGGLDCGHLNDLEAILSR
ICQSLAEEGKVNPTDHS
>_0105.001081_ YP_055544.1 gi|50842317|ref|YP_055544.1| putative TetR-family transcriptional regulator [Propionibacterium acnes KPA171202]
MASPTAIRTQGVIRRAAIEL
AIEKPVDDVTVDDIAERAGV
SRRTVFNHFPSKYDVYLPPL
VTYPQEVLDAFATDVETPLA
TLIRDLLEARWRATNVDFDD
LCILMKIGRESSELRMAFKE
AVEGQRAALVAASARRTGKS
EDSLEVLALVGTVQAMERCA
VQSVVARPGGSSAEVADTFD
RVVDVWARLSAELSADMSST
KP
>_0104.001179_ NP_638326.1 gi|21232409|ref|NP_638326.1| phage-related lytic enzyme [Xanthomonas campestris pv. campestris str. ATCC 33913]
MMFTDTQLASIMQCSPQRAQ
RWHGPLLAAANRFGITTKRR
AAHWLGQVGHESLSLSRMEE
GLTYTTSARLLEVFGTRITP
AQAPKFLRNPVGLANFVYAD
RLGNGNTASGDGHRYRGRGP
MQHTFRGNYRRIGELIGLPV
EEQPDLLLQVEPSALGAAAY
WHDNGLNVLADTGDVLGLGR
KINLGNVRAKRLPEGHSDRV
TRTQRALQILGVS
>_0104.000516_ NP_637049.1 gi|21231132|ref|NP_637049.1| glycosyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913]
MHVAHLNLLPAPSGWDAVQV
FAQWPSLADIAEAVASTGTQ
VTVLQVAAHTEQLTRQGVAY
HFLDPGKRGSAVRARRLADL
LQQLDVAVIHVHGLEFAGDA
RRLARLLPQVPIVLQDHANR
PPRWWRRPVWRARYAAAAGI
AFTSLALAQPFVRARLFGPR
TQLFAIPESSSRFTPGDRIQ
ARAVTGLAGDPCVLWVGHLS
EGKDPLCVLDAVAMAAARLP
GLRLWCAFHEAPLLEAVRQR
IHDDPRLASRVHLLGKVTHA
QIQQLQRAADVFVSASHAES
CGYAALEAYACGTLPLLSDI
PAFRALSDNASMGALFPVGD
AARLSDLLVAHARQRPGRAR
VRAYFDARLSFAAVGRQWRD
AYTQVLRTAAGQRQ
>_0102.001253_ NP_110560.1 gi|13540872|ref|NP_110560.1| Predicted regulator of amino acid metabolism [Thermoplasma volcanium GSS1]
MLLILSEYFKEHPIKQRIIE
GLYRSGISVKEGRFFANDVE
ISISEIAKTFGVNRKTVYDT
VKLVEGNSHLKRVMESIMPM
ADVSNVALLTGNQIITVYTT
LGHYPTVWKDVFMAISKYGC
YIREIFSRNMSQDESFIRII
FYRPIPQKIIDQIKAIDGAR
NVEVKVSSDVDEILCRTCDI
KICPTKYISDVEESKEDQV
>_0102.000959_ NP_111784.1 gi|13542096|ref|NP_111784.1| Predicted transcription regulator [Thermoplasma volcanium GSS1]
MNSDPTKERILHGLITLYLL
KELVRGPMHGYELQKTLSSV
IGNPLPQGSIYVLLKTMKER
NFVTSENAKNEKGQTLTKYY
ITEEGKKFLCSHSESLLIAR
KIIDDLLKTVDLIDEE
>_0102.000616_ NP_110590.1 gi|13540902|ref|NP_110590.1| Threonine synthase [Thermoplasma volcanium GSS1]
MEELLNSETKPPGRTPTIKA
YALGKELRLNNLFLKFEGAN
ATGTQKDRISEAHVLNAIRD
GYNGIAVGTCGNYGASIAYY
ANLYGIKSYIGMPSAYTHDR
EDFMLSSNAEILYYNGKYEE
TVSFIHDYATDNSLYDASPG
SDHSYIDTKMYAGIAFEIYE
AILKVPDYVIVPVGNGTTLS
GIYEGFHLMYLNGTIDRMPR
MVGVSTRGGNPIVSSWKRGY
KKVVDLDPARIRETAVNEPL
VSYRSFDGDKALAAIRETHG
KALYVSDDEMVRFSELMYRE
EGLNPLPASASAVAALVHLH
LNPDDYVVSVITGRRM
>_0102.000251_ NP_111975.1 gi|13542287|ref|NP_111975.1| Ni,Fe-hydrogenase III large subunit [Thermoplasma volcanium GSS1]
MKYYRFGKPEGRFVGNTEKY
SVYEHILSDQRREIPSESYR
NLPGEFTFNYGPATGGLIES
VAFDFHTPGELIKHVDVYPY
IKTRKIKVRGLSPEDALLLV
ERINGFHAASHAVAFEMAVE
DALNIDVPEEVQYSRIIMLE
LERMRSNLEVVKRLCEPAGF
GVPQNQIAYLRENIARIITS
FAGHRYFFSSSYVGGCQFNG
LVLESVIEDVKEEFEGIFND
LLQSKIFLNRLQNNGKISSS
DMLGPAARAAGIEVDARIDE
KRLPYSKLGFKPIVFDEPDA
FGRFYVRSKEILSSADLISK
AIRFSGNSPPAKIEKTNGEG
AARVESPQGDLFYYVKINDG
KISDVQISSPSLLNIEAFKK
SMIGNIFTDYHFNWESFGIW
VSELAVVIQ
>_0099.000387_ TFUS_04MAR05_CONTIG93_REVISED_GENE1347 tfus_04mar05_Contig93_revised_gene1347
MDVRPLVSALDRALCTDPRL
AELPGRFLFGLDDGRGDLAG
MPIDLGIYAIDERSAQIRVG
TFSGPVISSTEIVDIILDLA
HRFLDISEGKWNVVQLPKKG
RELLNNVEFSNFLRHTKSGD
RWSVERFRRNILHGIITIST
AESAVAGSVPLGVLTPPMQR
ALLDAAEHSDSTIILTPWRG
VIVTPVPTDQASNVAALLQE
AGLVLDPASPWSRISACIGS
PGCARSRGDTRSQAVKLVRR
LSSPDTSDDGSPYHIAGCER
ACGAPHTPHTLVLLGSST
>_0095.001375_ NP_462677.1 gi|16767062|ref|NP_462677.1| putative helix-turn-helix protein [Salmonella typhimurium LT2]
MSAKTKFKSPAFEPIHSAAS
GLFSVDAIPQETMRSFDTAC
LSSIKDLQPLEIKALREKLN
VSQPVFARYLNTSVSTVQKW
ESGAKRPSGMSLKLLNVVQK
HGLKVLV
>_0093.002557_ NP_341886.1 gi|15897281|ref|NP_341886.1| Transcription termination antitermination factor (nusG) [Sulfolobus solfataricus]
MGCNFVEKPNMRNYYAIKVV
GGQEINVALMLEERIKTNNI
KGIYAIIVPPNLKGYVVLEA
EGLHIVKPLIAGIRNARGLA
QGLLPRDEILKIVSRKTVGP
TVKPGDVVEVISGPFRGTQA
QVIRVEEAKGEVVLNILESA
FPLQVTVPLDQIKVSKR
>_0093.002539_ NP_344516.1 gi|15899911|ref|NP_344516.1| Acetolactate synthase large subunit homolog (ilvB-6) [Sulfolobus solfataricus]
MIKYLVMNAGRLFLSLLKES
GVNKIFIVSGTDYASLIEAK
VEDSSLPEFEIVPHEITAIS
TAIGYALGNKLSAVAVHTTP
GTANALGGIMSAFTSRIPLL
VIAGRSPYTEKGNTASRNLR
IHWTQEARDQGELVRQYVKY
DFEIRMADQLPAVVSRAIQI
MMSEPRGPVYIVLPREVSIQ
EVNEARRIPMDYYEPAPSPD
KINKAKEMLEKSERPLIITW
RAGRRKEWFESLRRFADNYN
IPVLNYAGEVLNYPSSGPMA
LDRFDLRNSDLLLVVEAEVP
YFPKKIDLDIPIVKIDVDPS
YSYIPYYGFRCDLCIQSTPS
NFFDYISIRPKSYDEIKELR
AKQEEYKKQEIERLKDKKPI
HPKYLSYEIGIVASEYNLVI
FNEYQFNPRYARLNEFGSYF
ADLSVGYLGFALGAGVGYKI
ATNKDVLITTGDGSFIFGVP
EAFYYVASKYPTMVVIYDNG
GWLASAEAVDEVFPEGLAKS
KKYYPGADFDRRFEIGKTVE
TFHGYYELVEDPWEIKPALI
RGLEKMRRENKIAVIQVIVD
KVR
>_0092.000488_ NP_268850.1 gi|15674676|ref|NP_268850.1| putative protease [Streptococcus pyogenes]
MEKIIITATAESIEQVKALL
AAGVDRIYVGEANYGLRLPH
NFSYDELRQIAKLVHDAGKE
LTVACNALMHQDMMDQIKPF
LDLMIEIAVDYLVVGDAGVF
YVNKRDGYNFKLIYDTSVFV
TSSRQVNFWGQHGAVESVLA
REIPSAELFTLAENLEFPAE
VLVYGASVIHHSKRPLLENY
YHFTKIDDEVSRERGLFLAE
PGDASSHYSIYEDNHGTHIF
INNDIDMMSKLGELYAHGLT
HWKLDGIYCPGDDFVAITKL
FIQAKTLLEAGQFTQEEAEK
LDQAVHAHHPAGRGLDTGFY
EFDPKTVK
>_0090.001423_ YP_168774.1 gi|56698401|ref|YP_168774.1| transcriptional regulator, MarR family [Silicibacter pomeroyi DSS-3]
MTHETDQLYQAVQATRPLLR
NITAAVERGTLREGVTVGQR
AILEGLSLTPGATAPQLGAA
LQMKRQYISRILQEVQRAGL
IERRTNPEHARSHRYWLTPR
GEAIITAIRADEMAKLALFS
EGFSSVELTAYHKVQLALTR
FFADLAKEA
>_0086.001141_ ROSE_TM1040_30MAR04_CONTIG49_REVISED_GENE1195 rose_tm1040_30mar04_Contig49_revised_gene1195
MTGGHHRVVPLCAKAQTALT
HDISNARRFLMAQAALQPQN
ACVLLSFSDGTTAQYPYIWL
RDNDPEGFHPDTQERITDLS
AISPDITVADVELNDSQLLI
HWEGADSATSRFDLDWLRSY
VPGTRTADPARTGFQHWRCD
LGAGGIPRATAQEILSSDLA
LRTWLEQTQIYGISIVEGLA
DSTEAGMDVARRIGFLRQTN
FGVTFEVKSKPNPNNLAYTP
IALPLHTDLTNQELPPGFQF
LHCLANEARGGGSLFCDGYA
IAEDLRRDDPESFELLSTVS
VPFRFHDQDTDIRNRKKVIT
LDEDGRVIEICFNAHLADIF
DLEPALMQRYYRAYRKFMIL
TRSTNYLVTLKLKGGEMVVF
DNRRVLHGREAFDPQTGYRH
LHGCYVDRGEFESRLRVLHR
GQ
>_0086.000393_ ROSE_TM1040_30MAR04_CONTIG45_REVISED_GENE394 rose_tm1040_30mar04_Contig45_revised_gene394
LGRRFRGESHHKVDSKGRVS
IPASFRRVLEASDPNWQPGD
APELVIVYGDHRRQYLECYT
MEAIEEVDAKIAALPRGSKG
RKILERIFNGQSLPTTVDET
GRLVLPAKLRQKIDLDKEAF
FIASGDTFQIWKPETYEEVE
MAEAEKLMDELPDDFDPLEF
LDGAGGA
>_0085.002706_ SHEW_20DEC04_CONTIG154_REVISED_GENE2708 shew_20dec04_Contig154_revised_gene2708
MSQVNRNSKAKGVNRRQFLA
TTAKAGCAMGLLGLGVSGVA
KQSSHLDPMAIRPPGALDEQ
DFLSACVRCGLCVQACPYDT
LKLARWFEGAPTGTPYFTAR
TVPCEMCEDIPCVKACPSGS
LDHALTNIDEAKMGIAVLID
EKNCLNFKGLRCDVCYRICP
LIDNAITLERQHNQRSDHHA
MFLPTVNSDTCTGCGKCEHA
CVLEEAAIKVLPAHIALGKT
ATHDTYINTEETTLEMLNKG
LTL
>_0081.000345_ SDEN_20JUL04_CONTIG104_REVISED_GENE346 sden_20jul04_Contig104_revised_gene346
MSDIGATEIGIDTLGSTSIG
SNAVSSVIIGLVNPKTPVNV
GGIMRAAGCYRVDSVCYTGR
RYELAAKSGDAQYDVDTKDA
AKTIPLTGVESLLDQVPVGA
KIICVDLVVGATPLPHFVHP
EHAFYIFGPEDGTIPQVLID
AAHEVVYVPTVGCMNLAASV
NVLLYDRLAKSAQMLAGDEL
IKQSRDNNNRTKVKHWRNKE
>_0079.003423_ SBAL_17SEP04_CONTIG245_REVISED_GENE3426 sbal_17sep04_Contig245_revised_gene3426
MVISQLLVEENMTQLLKNWL
TQGPFAQQLISFNHHDIVTG
ALFTNQVAYFYEQLLAAPEK
KWLLASDTSDLFAVGLCAAL
LAGKEIILPPNTQTGTLSEL
THQFDGILSDKPLCECQAFV
LLKKELSLPNKPWPASEAIG
ELVLFTSGSSGEPKAIRKTL
EQLDVEVSVLEHTFAEHLPH
CSVVSTVSHQHIYGLLFKIL
WPLAASRPFLSEQIEYPETL
SYYTALLPNLCLISSPAQLS
RLPKALEHERQLRSPSLVFS
SGGPLSFAAAKGVNQCYGHL
PIEIFGSTETGGIAYRRQHE
ADEPWQVFDRISIDQDPTDG
ALLLKSPYLADDEWLRCEDK
IEPTENGQFRLKGRLDRIVK
IEEKRLSLAQMETLMSSHAY
VEQAALVVLPQFKSQLGAVV
TLSELGKNVLQEQGKLSINN
ALKAHLLTQFERVTLPRRWR
YPDILPLNTQGKRVTAQLVE
LFDHD
>_0079.002995_ SBAL_17SEP04_CONTIG240_REVISED_GENE2998 sbal_17sep04_Contig240_revised_gene2998
MKKKFATIFNNFENVHLTKD
VGMIPCAFTMLEGYDKSIIF
YWDKKGKEEKIELNEVILHP
IKARFRLFYYLKLFIEIFLE
NVTAINLYHDSIQTALFCYV
AKLINVKVYLKLDLGDRGCE
ALLKRKYSKNFIDKMRLVGL
NLATCISTETLWIFDNLNKN
NVFKSDRFLQIPNAILESTV
KSEPKPYCQRFNRIVVVGRV
GAFEKNHELILNALTEIKML
NGWTIDFVGPIEESFNEKID
LFYKNNESYINIVRFIGNKN
RDELMDIYSTSKVFLLSSLW
EGFSLAMVEAAYLGCYIIST
KVGGVLEVTDNGSLGNIYEK
EELAEKLMQLDDSVVGAGYD
KRLTFCQDTFKLGKYSKNIA
KRLG
>_0076.001908_ SAMA_14OCT04_CONTIG72_REVISED_GENE1911 sama_14oct04_Contig72_revised_gene1911
MTLFFLDNQRFHAESGETVL
SALKRVGHPINYSCTKGQCR
SCLLRLDEGKIAPKAQKGLE
PDLKAQQLVYACQCVAKNGM
KLSSPAEDTYVSARLLDKLS
LSEDVTRLIIKPDTRTPYIP
GLCTGIRGPEGLGRTYGIAP
GQGEGTFAVHVRRKRNGRFS
RWLCDEVKVGGSLSLTRPWG
RCNYDGAYGNDELIVVAFGT
GIGPALGLVQSALDSGHQRP
ISLYHWGKYLDDLYLHRTLL
KLMLEHKVLHYQGLISASSD
ADRIDNHRVRLMDVPQILKE
RHELGRDKRLFLFGEPDMVA
KVTEYAFLCALDMDRIHAQS
FEYRDLRRRPRNQDGQ
>_0074.002349_ RRUB_10JAN05_CONTIG98_REVISED_GENE3112 rrub_10jan05_Contig98_revised_gene3112
MNGRETMPESDTRTIHHVDA
HVGQRVRQRRTALILDQETL
ARRIGVSFQQIQKYERGRNR
ISASRLYDIAKALAVPIDYF
FSDLERGDPRHDGALAEDMG
RLAQGGSAPPDPLRLTQSLD
LAQAFWALPDDGMRQSFIAL
LKAMSSFED
>_0074.001834_ RRUB_10JAN05_CONTIG98_REVISED_GENE265 rrub_10jan05_Contig98_revised_gene265
MDTVSVFTRVGGPTNRASEA
DRHVGKRIRERRVMLGLSQQ
QMADMIGVTYQQAHKYERGI
NRISAGRLFEIAQVLHVPVN
YFFDGLDDEASETLSPRQRM
CLELARNFAMIQNERHQEAL
SQLARALAAQVSVVEVIEEC
QAQRA
>_0073.006290_ YP_298265.1 gi|73537898|ref|YP_298265.1| regulatory protein, ArsR [Ralstonia eutropha JMP134]
MVRESPKQRAPDSASAKPEL
DVDAIHKALANPMRRKILAW
LRTPEAYFSAQEHPLDMGVC
AGLIDTHCGLSQSTVSAHLA
TLQRAGLIRARRIGQWVFFK
RDEETIQAFLDHIHQDL
>_0073.005949_ YP_299832.1 gi|73539465|ref|YP_299832.1| regulatory protein, TetR [Ralstonia eutropha JMP134]
METSTASAGEDTPVKASRRL
LPEEREQQIVEKAIEHFTRN
GFGGSTRELARQIGVTQPLL
YRYFQSKDALIERVYNEVFQ
WRPGWEGQIADRSLPLTERL
HAFYLDYSSVILREEWIRLF
IFAGLTHEGINKKYLSKLRS
KVFLPVLAEVRAEFGIPAPR
NAAETEAEIEMIWSLHAAIF
YIGVRKWIYGLKVPADMDAL
IRRQVDMFLNGAAAAIRAMR
AGTP
>_0073.005659_ YP_299261.1 gi|73538894|ref|YP_299261.1| hypothetical protein Reut_B5069 [Ralstonia eutropha JMP134]
MPATNNKARQVMVYGCARYG
QPDSHQAMTLEQIGRNVATI
GGYGFSGAYEHSATARTPAG
GTAAPYLVPLDTVVGDAQAQ
ALHLRSADDLFGGVVPFAFV
ATKVISHGLVAPDAVAPAGW
NPDFAQRAGAAVLPGFTAFS
LEDARSAGLRLMAGGVVRLK
DPCGIGGLGQQTVDSEAALD
AALAAMSATDIESHGLVLER
DLDSPDTYSVGQILVAGVLA
SYCGTQDLTVNNTGEEVYGG
STLAVVRGGFDALLAQPFGP
RALSAIRAAMAYHDAALACY
PGMVLSRCNYDVAFGVPVGA
TGEGAARALTGVLEQSWRVG
GATGAELAALRALKADPARE
RVVAATREVYGPDAHLPAGA
ELYFQGEDRHVGLLTKYAYL
ESDNDGHP
>_0071.003444_ NP_744479.1 gi|26989054|ref|NP_744479.1| hypothetical protein PP2330 [Pseudomonas putida KT2440]
MFGLIKTWKALEARGIMGIN
RRNADYVLKYNKRNLYPIVD
DKIITKERALAAGIHVPEMY
GIIETEKEIEKLDQIIGGRS
DFVIKPAQGAGGDGILVIAD
RFEDRYRTVSGKIISHEEIE
HQISSILTGLYSLGGHRDRA
LIEYRVTPDQIFKSISYEGV
PDIRIIVLMGYPVMAMLRLP
TRQSGGKANLHQGAIGVGVD
LATGVTLRGTWLNNIISKHP
DTTNAVDGVQLPNWDGFMKL
AAGCYELCGLGYIGVDMVLD
QDKGPLILELNARPGLNIQI
ANDCGLTQRTHAIEAHIEAL
AKEGVTEDAEQRVRVAQGLF
GHVPNR
>_0071.002963_ NP_743401.1 gi|26987976|ref|NP_743401.1| hypothetical protein PP1241 [Pseudomonas putida KT2440]
MISKKISPQDMPILDLDLSK
TKRFEASRFLDSPETIAAFL
AEAMKANDAQTLMHALGEVA
KAKGVNQFAQDAGVNRESLY
KTLKGEEKTRFTTIQKLMVA
LGVELTVRPLEKLPGS
>_0071.000585_ NP_744020.1 gi|26988595|ref|NP_744020.1| ISPpu8, transposase [Pseudomonas putida KT2440]
MAKLALEQAIAPEWVDQVFE
EHRQRQYSRELLFSTIIKLM
SLVSLGLKPSLHAAARQLDD
LPVSLAALYDKISRTEPALL
RALVTGCAQRLAPTIHELGC
SAMLPDWQVRVVDGSHLAST
EKRLGALRQERGAARPGFSV
VVYDPDLDQVIDLQPCEDAY
ASERVCVLPLLAEAKTNQVW
IADRLYCTLPVMEACEQVKT
SFVIRQQAKHPRLIQEGEWQ
APMPVATGTVREQSIEVKGG
HRWRRVELTLHSPNDSGDNS
LMFWSNLPESISAQQIADFY
RRRWSIEGMFQRLEAILESE
IETLGSPRAALLGFTTAVLA
YNVLALLKRSVEQAHRDALP
ENWEASIYHLAVQIRGGYEG
MQIALPSEYMPVVPMENLAQ
RLLELARNIQPRQVAKSPRG
PKVLKAKAWVQGTAVHAHVS
TDRVIKAAKTKRP
>_0071.000089_ NP_743181.1 gi|26987756|ref|NP_743181.1| hypothetical protein PP1020 [Pseudomonas putida KT2440]
MPEHPLHRFFSSQRPRPTFE
WERYQQRDVLIIDHPRCQAV
FSRQGAQLLHFQPAGERPWL
WCAEQWPQVGAIRGGVPVCW
PWYGRHPSEDLWPAHGWARL
LDWKLVDSREDEEGVTLKWR
LDLCDWQVDLHARLGSRMEL
SLSTEHQDSEPCQLSHALLA
YWRISDVSEIALSGLEDIEG
YDRLNRQACREDGALKLKGG
CQKVYPGTPRVQLQDPAWQR
ELCIDTGDSDDTVVWHPGNR
PLMGVTGRESQRFVCVEATS
GSGEGLSLAPGQRAHLRLQA
HRLS
>_0070.000031_ PPEN_30JUL02_SCAFFOLD10_REVISED_GENE132 ppen_30jul02_Scaffold10_revised_gene132
LTKLYFIRHGKTEWNLEGRY
QGANGDSPLLKESYTEISQL
ASFLAPNKFQHIYASPLRRA
RVTATTLQHELDELQGYPTP
ITISSRLKEFNLGIMEGMKF
VDVEREYTDEVDAFRNHPDR
YDPTKIKGETFQHLVKRMKP
TILRICEKYPAKNDNVIIVS
HGAALNALINSLLEVPLADL
RKRGGLANTSTTVLASNDLG
KSFELVDWNNTSYLKKRIDP
TDVI
>_0069.001073_ NP_894501.1 gi|33862941|ref|NP_894501.1| phosphoribosylaminoimidazole carboxylase [Prochlorococcus marinus str. MIT 9313]
MVDSLCMSSVKSPMIGVVGG
GQLAQMLAQAAKSRAVDVVV
QSGSAIDPAAVEATRLVLAD
PVDVEATGKLVQGCCGVTFE
NEWVDIEALIPLEQQGVCFS
PSLTALAPLVDKISQRQLLR
DLDLPSPDWTLLSSISFAQP
ELPREWNFPVMAKSSRWGYD
GKGTKVLKSVEDLSQLLRSV
DPTQWLLESWVPFEKELAIV
VSRDAQGRVRSLPLAETHQF
QQVCDWVIAPASVDHAVEMM
AYNMAASLLTELNYVGVLAV
EFFYGPDGLQVNEVAPRTHN
SAHFSIEACSSSQFDQQLCI
AAGLPVPETHLHAPGALMVN
LLGLQKGGESSLDERLAKLR
SCDRFHLHWYGKDCETPGRK
LGHVTVLLNGVDAPSRQLEA
ETALKHIRSIWPTQDTVCA
>_0063.004564_ NP_252917.1 gi|15599423|ref|NP_252917.1| transcriptional regulator PchR [Pseudomonas aeruginosa PA01]
MTITIIAPPQADAAAPAPGN
RPGVAHIDPNMKLVTGTFCS
ASEDWFEEPLERGLRLILVQ
SGQLRCRIPGQPEHLIEGPS
LCTIANDGDFTSAQIYGTDK
PLRYTIVQLGVEALDSRLGW
LPEQLIRRPGGDPRIMSCPA
PRAMQALASQIATCQMLGPT
RDLYLGGKALELAALSAQFL
SGEGRPVEEPRITCSEVERI
HAARDLLVGALQEPPSLDTL
ASRVGMNPRKLTAGFRKVFG
ASVFGYLQEYRLREAHRMLC
DEEANVSTVAYRVGYSPAHF
SIAFRKRYGISPSEIR
>_0062.001150_ OOEN_16SEP02_SCAFFOLD3_REVISED_GENE1186 ooen_16sep02_Scaffold3_revised_gene1186
MDKNTVNQAGIVFQKLRKQR
HLSTKKLAKGILSVSSVNKF
ETGKTKLSFFKLGSLLKRMD
ISLDDYYEQIESETLSDSYN
HFLNKIEPIYQGNDLLTLKA
IAKEETSKNNEEFINLIKTA
SLISFIKKIDSNYLVEDMIV
KKNKPIFNERRILEFIRTGH
FKKLFNYFDLSND
>_0061.006372_ NPUN_22DEC03_CONTIG1_REVISED_GENENPR6117 npun_22dec03_Contig1_revised_geneNpR6117
MTEDKWISSDPRSDKLLLRF
RVKGFPKQFQISTGLKNLKR
NRDIVRLRRDAIVTDISLGR
FDPTLERYQFRPSAIATPPS
RLHFLGEGNLGELWKMFTEF
QSRQIEATTIYSTYRVVSRT
IDRLPSRSLLDAPKIRNWLM
ENTSQFMASKYLLRFDQCCR
WALEEGIIKANPFESLKKIK
RIKNNTDDCRAFTREERDTI
IGAFESDERCSHYSNLIKFL
FWTGCRHGEAFALTWKDISR
DCLQISISRSKNLLGIEKGT
KNGKSRIFQCSAGAKLHELL
LSMKPTASGDSRLFSTKRGC
SMTSFGVKPCLEPRREKPDR
SSEKVVKSGKNSLLEPLRYQ
AHFCNLGDRFW
>_0061.003236_ NPUN_22DEC03_CONTIG1_REVISED_GENENPF6602 npun_22dec03_Contig1_revised_geneNpF6602
MMTNMAVNDELWLKDPEFTP
SPSRLFHLEPIGLGTCYVES
LTSYVARLAAAHSVLPGTLL
AREIKPIVGHNHTTNPLNSK
SIVSLYGQASVKALNGTQIG
AKQLVFALEILTKRTDLQFL
TMLPWAKVFPVLGLLKHSHA
WCPYCYQDWLNNQQVIYSPL
LWALKPANICPIHYRFLESK
CPHCDLEFLHLWHNSRPGFC
LKCGGWLGMNYEVSLPDKRL
FEEIPNLQQEIWIVKTLGDL
IAQAPEFPCPPPRETIKTIL
EAYVYQYTQGNVSAFGRWLG
LSRYEILHWYSGVAIPNLDK
LLKICYALSTNLVDFLQLKI
LPLTLKQLVSLPAPKQKKLS
SQSALVTSNSSPKCERVIQA
MQLAQEEEPPPSLTQLAVRL
GFKTPSSLTACSKSLSASLA
TRYSEYQQQLRFLHIRDILE
LALFSDEYPPPSLRKIAKRT
GIGLATFYHYCPIVCHAISL
RYKDYRKFVHKLAIEQGCRE
VRQLASVLHAQGITPTAKNL
RKFMPHPSLLWQAEVIDVLR
QIRLDLSQ
>_0061.000540_ NPUN_22DEC03_CONTIG1_REVISED_GENENPF1021 npun_22dec03_Contig1_revised_geneNpF1021
MAASVEHGLNNNASIPPLES
GDRLTRHEFERRYTAMPNKK
AELIEGVVYVASPLRFRSHG
QPHGQLITWLGVYQVCTPGL
ALGDNATVRLDLDNEPQPDV
LLLIDKPARGQAQISKDDYV
EGAPELVAEVAASSASIDLY
DKKRAYRRNGVQEYIVWQTL
ENKLDWFCLQNGEYLSLVAD
ADGVIKSRVFPGLWLDITSL
ITGNMTKVLAVLQQGLNSKE
HAEFVEGLT
>_0061.000183_ NPUN_22DEC03_CONTIG1_REVISED_GENENPF0314 npun_22dec03_Contig1_revised_geneNpF0314
MHITKVTQNLKVGDKVNQKT
NHVFVFLEIFAHEGGIQSYI
KDIFRAYLGLSQAYKAEVFL
LRDSPDRLNLFEDENLKFHY
FKNQSPHLGRLQMTAALLKC
LLQNRPQQVFCGHINLAVLI
QTLCQPLGIPYTVLTYGKEV
WEPLKNQERRALTSADKIWT
ISRYSRDRACLANGINPKMV
EMMPCAIDGDKFTPGSKQPE
FVQKYRLTGSKVLMTVARLW
SGDIYKGVDVTIRALPQIAQ
VFPQVKYLVIGRGDDQPRLA
QLAKDLGVSDRVVFAGFVAT
EELMQHYHLADAYIMPSQEG
FGIVYLEAMACGVPVLSGDD
DGSADPLQDGKLGWRVPHRN
PDAVAAACIEMLQGNDQRCD
GQWLREQAIALFGIDAFQQH
LQKMLLSSVFTPNNK
>_0058.001902_ YP_207980.1 gi|59801268|ref|YP_207980.1| hypothetical protein NGO0867 [Neisseria gonorrhoeae FA 1090]
MEVHDKIRTLREVNQWTQEE
MAEKLEMSVNGYSKIERGKS
GINLDKLRQIAQIFNIDVVE
LLAEQNRSFFFSIGDNTNNH
HNIIGSDEMLVFENEKLRSL
LDAKDELIRQKDSEIAVLKK
LVILLEEKK
>_0056.000451_ SARO_25NOV03_CONTIG24_REVISED_GENE482 saro_25nov03_Contig24_revised_gene482
MPFEPPSFPSTDQLDRDIAQ
MLADDARLSFRKIAADLGVT
EGTVRGRVKRLQNAGLLKLV
PILDIDRARDCGPGEGGQHM
MFVTVKCANGKLDQVRHGLL
GLPQVSALYDANAAPRLVAI
CILSSLREAAEVTDKVIALD
GIREVETELVLQSVKYNAAI
APIAALEDTGQAVAERED
>_0056.000378_ SARO_25NOV03_CONTIG24_REVISED_GENE405 saro_25nov03_Contig24_revised_gene405
MSATEAPETKAAATPAPTDA
RTPPVAVWQILEKMRGQELI
DWRTAPVEGRASVEERNLDI
GFPLGWYAIDLSANLAVGEV
RPLRYFSKDLAMWRGEDGQV
RVIDAYCKHLGAHMGHGGKV
HGNLLECPFHAWRYDGEEGT
VKDIPYSKSIPPQVKRKCTR
TWHVTEANRWIWLWYHPEDV
APLFEVVHLPEATDPEWTDY
DIYEWNVYGSIQNMAENGVD
VAHFKYIHGTANVPLGDLRW
GDWGRGADVKAKMGTPWGEV
DGQISYDTMGPGQSWTRFTG
ISETLLVACITPVELDHVHV
RFCFTQPRSQAEGERAGVAK
AIIRDICKQFDQDKIIWDRQ
KFEPNALICEGDGPIAQFRK
YYSRYYVK
>_0056.000161_ SARO_25NOV03_CONTIG22_REVISED_GENE174 saro_25nov03_Contig22_revised_gene174
MARQRIPGNERRAQIVTAAR
RVFSRHGYDGAKTLQIAREA
NVSEALVYRHFPSKLALYRA
VLRQVFIEQDERWREQGIRA
DGTMALAAAIHTFIAASVHD
ADDPQRIDTHRMTLASLAGD
GSYASLIYRRSQRRNISAME
AAFASSRADGGMQGEPISVS
ASAMFVEHVGSMIAAIRALP
QGAQPYGIEGDELVRQATWF
CLRGIGMTDAAIATYFAKAA
A
>_0055.001759_ RGEL_26JUN05_CONTIG562_REVISED_GENEMPEA1129 rgel_26jun05_Contig562_revised_geneMpeA1129
MLRPSLVEAEMSPSLLLRLS
FALVLGLSAGLAHPAPDRQG
NGEAAEFPGQRLALKRASDA
VLGVQSTATEGASTIDTLGE
YRAGSGVVIASDGLVLTIGY
LILEAEEVELVLDSGKRMPA
RVVAYDLATGFGLVQAVLPL
GIAPAQLGQAHAVAEGEPLL
FVSGGDDGALSAAELVSRRG
FSGYWEYHIDGALFTSPARR
DHSGAGLFNAQGELIGIGSL
LVPSAPGDGSRRAGNMFVPV
DLLPPIFAELRERGVSRASM
RAWLGVNCVEQDDGLRVVRV
SRDSPAEMAGLQPGDLIRRL
DGAPVGGLESFYKMLWNGGS
AERDLTIEVLREGRMQSVPV
HSIDRTQTLRRARGI
>_0055.001039_ RGEL_26JUN05_CONTIG562_REVISED_GENEMPEA0408 rgel_26jun05_Contig562_revised_geneMpeA0408
MSMTIAPPSLDALARQIQTA
QDATRQIEPFTSQLDGFDVP
AAYAVAQLVHEARLREGARA
IGRKIGFTNPDMWSLYGVRD
PVWAHVYDRTVVRVAGGRHV
CRLAPFTEPKIEPEIVLHFH
RAPPAGADAAALLDCIDWVA
HAFEIVQSHFPGWKFRAADT
VADAALHGALLVGEPQPVAR
LQPGLRSALAAFSLELVCDG
AVREVGVGANVLGSPLAALA
HLAGVLSRQPQALPLQAGEL
VTTGTLTTAQPVRAGQTWHT
VLRGIDLPGLAVEFVD
>_0053.003424_ MMAG_12JAN01_CONTIG3871_REVISED_GENE3442 mmag_12jan01_Contig3871_revised_gene3442
MKILVNAISARMGGIVTYTR
NLLASFNERRVKSTFAVSAR
FPDEGPGVLRLAASDLRPLR
RFAWEQTIWRETVRRIAPDV
LFSSANFGLFRSPVPQVLLV
REGGLFDPFYLANCTPEQGP
VAGFQRGIRRRLIIGSARSS
DLVITPTATMRDMLLAWAPD
LEGKVEVNSYGTLSDAFAPP
CGASRPWRGDGTLRLLYVSV
YYPHKQPGLVCQAVRGLLAE
GIETRATITMSRAETRDFLG
GIHDHILLEQAETDGLVELG
RRRYEDLPGLYHGHDVFVFP
SISETFGHPMVEALSSGLPV
VAADTPVNREVCGDAALYFD
PLRPSALVECIRRLDGDAEL
RGKMVRMGRERVVQAFTWAS
HVDRLIGMFERVAAGRRP
>_0052.007138_ NP_109407.1 gi|13488400|ref|NP_109407.1| hypothetical protein [Mesorhizobium loti]
MKMAEAGDLMSRGALPSPVG
TAIAIAHHGELIQGVFKDDD
GRLHRGLVTLPIAGLRSEAR
FDRSDGDAVVVTPDHKIKAA
AAARLTLDFLNVTGGGALTL
QSSIPVGHGYGSSTADVVAA
IRAVAAALNVQLRPSSIARL
AVSAERASDAIAFDDHAVLF
AQREGRVIENFAGSLPPLLL
LGFKANGGVPVDTLQLPPAR
YDSAEIQEFGVLRALVARAV
RLQDPHLLGRAASASAVISQ
RHLPKQGFDEIADIAERAGA
CGVQVAHSGSLLGLIFDLFT
PNLKRRAALVAQQIRRAGFK
DVEVHLVNAEGWPW
>_0052.004501_ NP_104857.1 gi|13473290|ref|NP_104857.1| hypothetical protein [Mesorhizobium loti]
MTKNGKAEENKKINIALQGG
GSHGAFSWGVLDRLLEDGRL
EISAVSGTSAGAMNAVALAD
GFVRGGVDGARQKLDDFWRA
VAAKGRFSPVQRMPWDVAWG
NWSIENTPGYVFFDTMSRVF
SPYVANPLGLNPLRDVVAQE
IDFKNVRACKSMELFISATN
VETGQLRVFSDGEIDLDTVM
ASACLPQLFRAVEIKGVPYW
DGGYGGNPALYPFFKTAATE
DVLLVQINPVVREGTPRSAN
EIQNRIDEITFNAGLLREFR
SIAFVKELIAAGRLPHGEYR
DIRMHRIDADEAFKDLSASS
KVNAEWAFLTYLRDLGRTAA
SDWLEENYDAVGKRPTLDLS
GELDDGFKPVRGPAPGRRVK
EFLAVRKNPEAERRRA
>_0052.003384_ NP_102856.1 gi|13471287|ref|NP_102856.1| hypothetical protein [Mesorhizobium loti]
MSESIAALPMYDWPEVRGEV
DAQWALLCDVFRQKGIDAPQ
TIVRRNGDLPPVPGGIHDAE
GAWIAPDPATLPPDELDFHK
LWLHPALLFAQTCWGPMELG
LSSHVQVIGQPSYDAYEGGQ
GELYSSALVMRTGEGSEARS
PADGKALLPLDLMRGKRFTF
NSLDSMSGMIGLTRDLQAAG
ESLDIFSSRSESGGHRASIV
TVAEGRADVAAIDCESWALA
QRFEPAARKVAIVGWTARRK
GLPFITARTTPEKTVRAMRE
ALAGLAEQPRIQRVG
>_0052.001408_ NP_105452.1 gi|13473884|ref|NP_105452.1| hypothetical protein [Mesorhizobium loti]
MFSTRRDIEVASAGTNHDAD
TPLTRELVAWADIIFVMEKV
HRTKLQKKFKASLKKARVIC
LDIPDNYEFMDLELIDLLKA
RVSRYLA
>_0050.002480_ MFLA_01DEC03_CONTIG131_REVISED_GENE2767 mfla_01dec03_Contig131_revised_gene2767
MQDLAVAHVYRTYFPDPPGG
LQEAIRQIALTTGMQGVDNT
VFTLSPQPRPAILQRPEACV
VRCRSWAAPASCDLGGIGAF
LAFSRLAEKSDVLHYLFPWP
FADVLHTVVRPGCPAVMTYI
SDVVRQQLLGRLYAPLMWKV
LRQMRLVVANSPAYARTSPV
LSHPEIREKVRVIPLGIEES
SYPKSGDEEILQRLGIGKDE
PYFLFIGVLRYYKGAHFLVK
AAKRIGAKVVFAGAGPEGAR
LKALAGEVGAENVIFAGMVT
NAEKVTLLQCCRALVLPSHL
RSEAYGMVLVEAAMFGKPLI
SCEIGTGTSYVNHHEETGFV
VEPASPEALASAMAVLLSED
RLATEMGAAARQRYELLFSG
PALGKAYAALFREVDAS
>_0049.002461_ NP_786370.1 gi|28379478|ref|NP_786370.1| transcription regulator [Lactobacillus plantarum WCFS1]
MGTELQFVQYLHQMRDYNDQ
HPTTKGLILLGYLERDFIRF
YRAGKIEEGIQFAKKNLTRS
RDLLNKLSSEEKQLQLSALV
DVLAFEGIQNHAEIYEFVKL
RNDYHRWLVKLPVTTERYQP
LVVQIIRDFAAIAKPNALAY
NAHLESTLDVMYYTNAHLHD
QLSVKKVLAHVNARCNPESV
RRSFSQEMHMSIRDYINAKK
IQEAEHMLLATDLTIRAIAA
ELCFYDAADFSKRFKKETGQ
TPLEFRQLNTRTD
>_0049.000493_ NP_785386.1 gi|28378494|ref|NP_785386.1| hypothetical protein lp_1833 [Lactobacillus plantarum WCFS1]
MTAKFPYAKSFLASLETAGK
QASTIEQYELTLADFFNYEQ
HFNETFAKDQLLADLTENDI
QAYLAMLREQRQFKTSTLNK
CLSNLNGYFSYLFSHRIITT
LPTFTIKGQPLTNRQQTTTW
PEQLAAWLAMDDLHPYTRLF
LLLTTKGYTATEMLTPGFYQ
QLNAITFTAVEQAFLVKLRA
YLQPLQTQSGSSDLFLKQRQ
RGTDPHLTLAALHKYLAGDS
QRLGVPLKPVALRQDFMLWF
LNQHRTTEPTEIMQQLRLDE
TSLEYYQNLLRQRDLRTLKA
TKTD
>_0041.000985_ NP_208076.1 gi|15645897|ref|NP_208076.1| conserved hypothetical protein [Helicobacter pylori 26695]
MDFIGFEDLKCKDKENSQKV
FVIRNDKLGDFILAIPALIA
LKHAFLEKGKEVYLGVVVPS
YTTPIALEFPFIDEVIIEDN
HLSATLKSKPIDALIFLFSN
FKNARLAFSLRKSIPYILAP
KTKIYSWLYQKSVRQSRSLC
LKTEYEYNLDLIHAFCKDHN
LPNAQLKKIAWKLKDKSKER
SIIASKLNADVGLLWIGVHM
HSGGSSPVLPASHFIKLIDC
LHNNLSCEIILICGPGERKA
TEELLKKIPFAHLYDTSHSL
VDLAKLCANLSVYIGNASGP
LHVNALFDNQSIGFYPNELS
ASIARWRPFNERFLGITPPN
GSNDMGLIDIEKEGEKIVGF
INYRKM
>_0038.001742_ NP_281184.1 gi|15791360|ref|NP_281184.1| glucose kinase; GlcK [Halobacterium sp. NRC-1]
MHYAGVDLGATNVRGAVSDE
SGRIVGVDRRKTPSGPTGIA
VTETVLAVMRAAAADAGVAP
TAIEAAGIGSIGPLDLANGA
IDSPANMPASVETIPLVGPL
ANLLGVDTERVFLHNDTVAG
VIGERFYADRTPDDMAYLTI
SSGIGAGIAVDGTVIGGWDG
NAGELGHMVVDPRGRRTCGC
GRDGHWEAYCSGNNIPEYAR
LLADDADGVETALPLDSGGF
TAKDVFECAADGDTFAAHVV
EQLGVWNGIGVTNLVQAYAP
LVVYVGGAVALHNPEQVLGP
IRAYIQERVFSNVPEIRLTT
LGDDVVLKGAIASALTGGTG
DSTHAP
>_0037.001541_ NP_951708.1 gi|39995757|ref|NP_951708.1| hydrolase, carbon-nitrogen family [Geobacter sulfurreducens PCA]
MDFTVALAQIKPKLGCVADN
CLMVRQAVERGIDEKADLVV
FPELALTGYFLKDLVPDVAL
RLDAPEINALRELSRHISIA
VGLVEVSADYRFFNTSLYLE
GGEVRHVHRKVYLPTYGLFD
EQRYLARGEHFRAFDSRFGR
MGLLICEDMWHLSAPYILAM
DGATTVICLSSSPGRGLTED
DSLGSTIAWQKLTSTTAMFF
NCRVLYCNRVGYEDGVNFWG
GSEVVAPSGAVTSRARILEE
DFLVAGVDEGALRRERIFSP
MMRDESLLITLSELRRIERE
RGR
>_0036.001463_ EXIG_01APR05_CONTIG280_REVISED_GENE1464 exig_01apr05_Contig280_revised_gene1464
MQKKALVVIDIQNDMTKNYK
EVIGTINQSIDWAVEQDMHV
VYIRHENLSAGRRTFKTGTR
GAELAPDLKIVSDHIFTKYK
GNALTSEAFAAFIEQNDITD
FYLTGGDATACVKSTCFNLR
KLDYGVTVITDGITSYDKKK
LPEMIEYYAKKCSHIIQFND
LLSIN
>_0035.002363_ NP_816235.1 gi|29377081|ref|NP_816235.1| transcriptional regulator, TetR family [Enterococcus faecalis V583]
MPTNTFFHLPEEKQQRLLDA
AQIEFSRHSLQEASIANIVK
LAGIPRGSFYQYFENKEDLY
FYYFATLRKNSERDLEKQII
AENGDLIEAMDVYFSKMIVE
VLTGENASFYRNLFVNMDYR
ASRRVTDNLATGEEEKNRKQ
HCHKHRGRKGHAAYAEHLYQ
IIDHSKLTIETPKEFTWFMQ
TAMHAVFSTIVDGYRQQREN
TAYDSTEAVKQLKMKLSWLK
NGAYK
>_0035.000702_ NP_816116.1 gi|29376962|ref|NP_816116.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583]
MKENFLKQKRMEKNLTLEQV
GNFVGVGKSTVRKWETGMIE
NMGRDKIVALSKILDVSPLE
ILGIPETEETPFVVPTNIMN
IYKQLTTENQEAVFRYAQKK
LTEQNYF
>_0035.000545_ NP_815531.1 gi|29376377|ref|NP_815531.1| PTS system, IIA component, putative [Enterococcus faecalis V583]
MVIKTSIFSLDTTYISNKKT
QEEVFEEVYLDLLKKKLVTP
DFLTNLLEREHNYPTGLSLT
PIDPALPNIAIPHTESTFVR
TTRIIPIKLKQSLSFHNMII
PDETLSVSFLFMILNENGIE
QTGLLATIMDFINTTDRSSL
LAFFQCEDKEEVYRFLQKNF
KGEI
>_0034.004295_ YP_026242.1 gi|49176397|ref|YP_026242.1| pyrimidine-specific nucleoside hydrolase [Escherichia coli K12]
MKLIITEDYQEMSRVAAHHL
LGYMSKTRRVNLAITAGSTP
KGMYEYLTTLVKGKPWYDNC
YFYNFDEIPFRGKEGEGVTI
TNLRNLFFTPAGIKEENIQK
LTIDNYREHDQKLAREGGLD
LVVLGLGADGHFCGNLPNTT
HFHEQTVEFPIQGEMVDIVA
HGELGGDFSLVPDSYVTMGP
KSIMAAKNLLIIVSGAGKAQ
ALKNVLQGPVTEDVPASVLQ
LHPSLMVIADKAAAAELALG
>_0034.002996_ NP_416025.1 gi|16129467|ref|NP_416025.1| persistence to inhibition of murein or DNA biosynthesis; regulatory protein [Escherichia coli K12]
MMSFQKIYSPTQLANAMKLV
RQQNGWTQSELAKKIGIKQA
TISNFENNPDNTTLTTFFKI
LQSLELSMTLCDAKNASPES
TEQQNLEW
>_0033.002198_ YP_049059.1 gi|50119892|ref|YP_049059.1| TetR-family transcriptional regulator [Erwinia carotovora subsp. atroseptica SCRI1043]
MSKPQARQRLSREERHVQLI
QAAWQIIREEGTEALTLGHL
AEQAGVTKPVVYDHFTNRSG
LLAALYKEYDARQTAIMDGI
IRKTEPVLDKLAAVIATSYI
DCVLLQGREMPNVMAALTGT
PELEHIRQEYDAIFTEKCRA
LFAPFCADQPPHDAALRAMI
GSAEGLSYAAVKGIITEQQA
KDELFHVIISMVKRCSAGR
>_0032.002876_ YP_009504.1 gi|46578696|ref|YP_009504.1| glycosyl transferase, group 1 family protein [Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough]
MRIAIVHYWLVGMRGGEKVI
EALCRMYPQADIFTHVVAPE
RLSSMLAARHIRTSFIQRLP
GSVRHYQKYLPLMPLALEQF
DLRDYDLVISSESGPAKGVL
TRADTAHVCYCHSPMRYLWD
FQQDYLDNASPLMRPFMRIF
FHYLRQWDVASSQRVDRFVA
NSRNVARRITKHWRREATVV
HPPVECDLFTQAPDVADLPD
DEVADIVRQGGYYLCLGQLV
GYKRVDIAIEACRKAGRRLV
VVGDGEQRAMLERNAPEGVT
FLGWRTQDEIRALYAGCRAL
LFPGEEDFGIVPVECMASGR
PVIAYGKGGALETVLDGETG
VLFHEQTATACHDAIMRHER
MERDFVPDSLRRHARTFDTS
VFERKFRREVEAALHAVRG
>_0031.001234_ NP_294185.1 gi|15805489|ref|NP_294185.1| hypothetical protein [Deinococcus radiodurans]
MGEPFGGPLMGRLVSLLPSA
TDLIFELGLGEQLLGVSHCC
DHPGAASLPVLTRSIIGSDL
PQAEIDRAVSEAVRAGRALY
TVDGPLLDRLRPDLVVTQGV
CEVCAVTPGTVAEAVRFLPG
CLPAEQVLSLEGKTFAGILA
DLRALARAAGVRERGEALAA
ESERRWNAIRPVGVQVPEPP
RVLTLEWVDPPFYGGHWVPE
QVAQAGGKDVLGHAGRDSGR
TSWEDVVQLDPDVIVVMCCG
YGLSDNAEFARQVLSHPELR
AVRAGQVWGVDANAHFSRPS
LGVVRGAEVLAALLRGEESA
GESVRVRAE
>_0031.000070_ NP_051594.1 gi|10957469|ref|NP_051594.1| transposase, putative [Deinococcus radiodurans]
MIDAPRVNHHDLSAHMPGMS
TPQGKKRRADRTFRDEQLDR
GFFIALLVVHLPPGKVLLSL
DRTNWEHGETPINFLVLGAV
VHGFTLPLIWVPLDQSGNSH
TYARMWLVLKLLRAWPAKRW
LGLVADREFIGAEWFRFLRR
QGIKRAIRIRQTDMLDDMKG
KEWFEHVQHGHFHEIGEKVF
VFGELMRVVATRSPVGDLVI
IATDFSARKTWRLYKQRWSI
ECTFSSFKKRGFDLERTGMT
ERSRLQRLFGLVTLAWMFCL
RLGVWLSQTWPIPVLKHGRR
AVSLVRHGAQHLVDALRWKP
QQFMAILEVFIQAFCPPGAA
ESEVVTY
>_0030.003713_ DHAF_12NOV03_CONTIG944_REVISED_GENE4239 dhaf_12nov03_Contig944_revised_gene4239
LNYRKEIEKCIEFIENHIKE
DITIEEIANQSGYSLYHFCR
VFSLCKGISVMEYIRGRRLA
LAATELFKGRKIIDIAFDYG
FETPSGFAKAFRKAYGYSPT
QYMMRMPQYADTKTTFEIGG
YIMKPVMVKRPAFKVAGYGI
KTNITGVTYTKDIASYWSNY
EGKNLESKMYKILNPAEHGE
VGLCVPLSEDGNVIYLNFRS
AKICSNSVYYWIRLKIFCSL
TEKHLSNW
>_0030.003263_ DHAF_12NOV03_CONTIG1087_REVISED_GENE3740 dhaf_12nov03_Contig1087_revised_gene3740
MPRFSDTEKEMIKEKLLREG
ERLFVAHGVKKVTVDDLVQA
AGIAKGSFYAFYTNKEHLYM
DIIEQCQMKLWQELDDFLAD
HKDLRPQELTKRSFGRMLEG
VKEYPILVKTDSAVMSYLQR
KLPQDVLDAHGFEDSKALVK
LQEYGVRFAYELPVVAKALQ
ALYVAIAYLQQEEADHAVVV
NLLLDSLIEQIVR
>_0030.002778_ DHAF_12NOV03_CONTIG1084_REVISED_GENE3159 dhaf_12nov03_Contig1084_revised_gene3159
MTTWVIVIYLNIELDRNEVA
VIYPKFYSLEAEKRERIINA
ALKEFARNGYEKASTNEMTK
EADISKGSLFSYFNTKKELY
LFLLDYVVEVIESIYDEVDW
QETDLFERMRKIGLIKFKIY
KKFPHAINFLKVAAHEDAGE
VKAEIAETGRHLIADGLGRG
YENIDWTKFREDMEREKMLN
IITWTILSFAEQQRDRVESF
EDLSLDLLREWDGYFDILKR
CFYK
>_0030.000593_ DHAF_12NOV03_CONTIG1033_REVISED_GENE676 dhaf_12nov03_Contig1033_revised_gene676
MLEQNQSRKPELLAPAGDYE
KLKFAIAYGADAVYMGGPAF
GLRAYAGNFTMEQMAEAIQY
THHAGRKLYVTVNIFAHEQD
FEEMAAYLKQLESLGADGAI
VSDPGIIALAQEAAPKLPLH
LSTQMNSTNSYSINFWLKQG
LERIVLARELTLAEIRAVRE
KVPGELEMFIHGAMCMSYSG
RCLLSNYLTGRDANRGECTQ
PCRWGYGLVEEKRPGQVFPV
EEDERGTYIFNSHDLCLLPY
LPMLKPLGIDSYKIEGRMKS
IHYVSSTVKVYREAIDTLWE
QGEEAFKAKLSSWLEEMDKV
SHRDYSPGFLFGKPGAESHN
IESSNYIRDYEFVAFGLAAD
NREHPQIPTLVKDEFSQGYW
VEQRYHFQKGELIEVFSPHE
EPWTFEVKGIHTVEGEEVDV
ARHAKEILKLELPRPLPPFA
ILRRAKKDKK
>_0030.000080_ DHAF_12NOV03_CONTIG1005_REVISED_GENE102 dhaf_12nov03_Contig1005_revised_gene102
MDALDRALLNIVQTDFPITS
RPYETLAGLTGTTEEEAWQR
IQRFRQEGVIRRLGGVFDSH
RLGYKSTLCAARVPEDKIQI
LADLLMELPGVTHNYLRSHD
YNIWFTLIASSQKEVEKILT
TIKGLIGTDEVYSLPALRLF
KISVDFDFNTEEQAGEQRHS
EECECTANPRGSQKLEPYPV
DDMDKLLIRELQGNIPESLT
PYAEIAAKLMWQEEKVLRQT
RALVDNQVIRRFGAVLRHQK
AGFTANAMGVWQVPEAEAEA
IGKVMASFREVSHCYQRPTL
KDWPYNLFTMIHGRSEEECG
EVMARIAQATGIKDYAMLFS
IKELKKSSMQYYREEDD
>_0030.000039_ DHAF_12NOV03_CONTIG1003_REVISED_GENE46 dhaf_12nov03_Contig1003_revised_gene46
VRVHTPSGLALKVVFVQNRN
NRREWLAILTTDLSLETTEV
VRIYGMRWSIETFFKMAKSH
LKLGTEFQGRSFDMMVSHTT
IVFTRYLILEWERRENNDER
SLGGLFYLFADEVMDLDLKT
ALRQLMTFVLNLLPNKPENN
ESLSQLQKWIAALPSYIKAL
FPQLGCES
>_0028.001157_ DDES_06JUN05_CONTIG143_REVISED_GENEDDE1158 ddes_06jun05_Contig143_revised_geneDde1158
MKATDFSESELRMQEYVEHA
ISRLGGVREVAVAAGVSRRT
VYAWKNGERFPSRSNLNRLS
GVLMRCAPSESPVPEFPAAD
GRESAAGLGVHENDGTEYGR
RAAFGATGAAAHAAHPLHDF
SDMPDLRGVLDEFVFVSKAD
ARPSAGGGSLQTGAENVERH
AFRLDWLLSKTHDTSSLRLM
EVMGRSMEPTLHNGDDVLVN
EGDTYLVEDKVYVVRVQDEI
YIKRFARTPGRLLFRGDNRD
LAYQDIEIDPQDVSCDWTVI
GRVIWAGKEL
>_0026.001716_ NP_662969.1 gi|21674904|ref|NP_662969.1| UDP-N-acetylglucosamine 2-epimerase, putative [Chlorobium tepidum TLS]
MSSVKKIVLIAQDRAAFLHV
APLVSVFRKNGVFESVLVRV
LTPGNRAEHDALAAAFGLSD
ELRTIELEPCTPVAETASLM
LALERVLSELEPAFVVPGGH
DSASLAGAFAAAKMGIPVVS
LDAGLRSYDRAEPEEISRLV
IDSVAALHFVSEHSGIYNLM
NEGVADERILFVGNTAIDSL
VTLMAQANQSGVLETLSLAP
KKFVTVLLKPEPFGNRDLLC
KVLESLAATSTVLLPGSQSP
EDALVGVSGLRMIDMPGYID
LLRLLKESALVLTDSAEFEA
ELTVMNVPCITLRQSTARPS
TVELGTNVLIDPDEAEILER
ATAILSGKQLKKTLIPEKWD
GAASKRIAEVLERGA
>_0024.003275_ CHUT_08NOV04_CONTIG199_REVISED_GENE770 chut_08nov04_Contig199_revised_gene770
MSQDTILLIWDRIGDYHLSR
VKACEKLLGAPVFTADLAGT
DNLYKWDSIAKTTHTVLSSK
PAEQSDIWNRFRTFRRIIKT
HSIAVVAMPYGRTEYHIFLL
YARLKGIRTIIFSESWYSRG
KLKDFLKSLLLKSLGNYFFV
SGKRAFDHFTKNYKINPEKI
ETGYSVVDNNHFQRRLFTEK
KYVLTIARYSEEKNLSFLID
SYAKSVISNTYNLMLIGEGP
LRPALQSQIDILGLSDRVQL
AGWVPYAALPKAYAEAVVFV
LPSSFEPWGLVVNEAMSAGL
PILVSDACGCMPELVAEGVN
GWSFNSNTQQELIERLNAFA
ALSEKGIEITGKNSMQLIRN
YTPDTWAGSIARLAQAGR
>_0024.002459_ CHUT_08NOV04_CONTIG199_REVISED_GENE3211 chut_08nov04_Contig199_revised_gene3211
MKPKETVCFNIKYSWHAISR
MYNERASKYGTTAAVGFILL
NIDVEKGTAATHIGPALGME
ATSLSRVFNTMEQDGLIERR
NDSSDKRKVTIFLTALGKDK
RQIAKDFVLDFNNKVREQVS
ESKLNTFFEVLHEIQSIIDN
KNTSLT
>_0023.002578_ NP_602033.1 gi|19554031|ref|NP_602033.1| hypothetical protein NCgl2743 [Corynebacterium glutamicum ATCC 13032]
MVALADHLQMAVKRNELEPE
LTSNPNPLSAEVHHLYPEET
RLATEILERTNNWLAEKGIP
PLPPAEVVAISLHLVNAGFR
TEDLAETYVMTGVFEQLFEV
IDSSFGITLDRQSVNAARFI
THMRYFFVRVHHDGQLNDGM
SVLRNSLEISHPDSVACAER
LSQILSLRLGAELSSDEQTY
LALHVARLAEDRGTTAD
>_0020.000489_ CAUR_25MAY01_CONTIG1048_REVISED_GENE693 caur_25may01_Contig1048_revised_gene693
MSRFRVGVQLHPQHTTWESY
RQAVQYAESIGCDTIWNWDH
FFPLYGPPDGPHFEGWTLLT
AMAVITQRAEVGCLVTCNSY
RNPALLSNMAKTVDHISGGR
LILGLGAGWFEKDYTDVFGW
VPNRKFLGVTPPGGDLLGPS
GSRLRALRQALPIIKERWAA
DQPPPLRRIPILIGGGGEKV
TLRITAEHADIWHGFGPIEN
FKRKNAILDQWCEQIGRDPA
TIERSVSPRAGEPIEPYLEA
GATHIIIGMGEPWNFAPVEE
LLKLRG
>_0019.002006_ NP_347468.1 gi|15894119|ref|NP_347468.1| Fusion: transcriptional regulator and conserved domain [Clostridium acetobutylicum]
MVKALVLYFLSVKPTYGYDI
QRFIEIDGMDQWAKVKSGSI
YYALNKLEKDGFIFTLREER
TGARIRKIYAISDKGVEELR
RVLKEELLKPIDNVEADKFM
IYLMFNRLERDEIIDLTRQH
IQSLEQRKKWWEDGRKIKVS
EATLKVEILHFDNVIANLDN
QIKWHKTLIEEIDEIIKFSK
GVEQLIRKIDFGALEDVQYK
SKCEDGDVVKQISNVADDIM
KNPTDVEEKIETLIKLLRKH
>_0018.007238_ BFUN_06OCT04_CONTIG482_REVISED_GENE7239 bfun_06oct04_Contig482_revised_gene7239
MRQVTYVANQRRYLQTPARS
SKYCLDALYQPRDIDRKAVI
EMQGESRFARAAQKFVSIRE
FYDIFRPITRTLAAPTPKRM
ASDKELADFLAGVERRAFKQ
TVYAVRDDDASLDIVQDAMI
KLAEKYGDRPAAELPLLFQR
ILQNAMHDYFRRAKVRNTWV
SLFSSLGNADDDEFDPLETF
EAQQGSAGAESNEQKLEREQ
VLQLIDDEIQKLPARQREAF
LMRYWEDMDVAETAAAMGCS
EGSVKTHCSRATHTLAQALK
AKGITL